RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 BUB1BO60566 1050 aaPredicted RBP10.49□□□□□ -0.73
VPS29-208ENST00000550267 AGFG2O95081 481 aa10.49□□□□□ -0.73
VPS29-208ENST00000550267 FUCA1P04066 466 aa10.49□□□□□ -0.73
VPS29-208ENST00000550267 PLEKP08567 350 aaPredicted RBP10.49□□□□□ -0.73
VPS29-208ENST00000550267 HOXC4P09017 264 aaPredicted RBP10.49□□□□□ -0.73
VPS29-208ENST00000550267 TRIM23P36406 574 aa10.49□□□□□ -0.73
VPS29-208ENST00000550267 TSPAN7P41732 249 aa10.49□□□□□ -0.73
VPS29-208ENST00000550267 STAT1P42224 750 aa10.49□□□□□ -0.73
VPS29-208ENST00000550267 GPR3P46089 330 aa10.49□□□□□ -0.73
VPS29-208ENST00000550267 CCDC14Q49A88 953 aa10.49□□□□□ -0.73
VPS29-208ENST00000550267 C16orf46Q6P387 395 aa10.49□□□□□ -0.73
VPS29-208ENST00000550267 BRAT1Q6PJG6 821 aa10.49□□□□□ -0.73
VPS29-208ENST00000550267 LIPIQ6XZB0 460 aa10.49□□□□□ -0.73
VPS29-208ENST00000550267 TIPARPQ7Z3E1 657 aaKnown RBP10.49□□□□□ -0.73
VPS29-208ENST00000550267 CD163Q86VB7 1156 aa10.49□□□□□ -0.73
VPS29-208ENST00000550267 FAM71AQ8IYT1 594 aa10.49□□□□□ -0.73
VPS29-208ENST00000550267 NLGN4XQ8N0W4 816 aa10.49□□□□□ -0.73
VPS29-208ENST00000550267 CCDC185Q8N715 623 aa10.49□□□□□ -0.73
VPS29-208ENST00000550267 BMPERQ8N8U9 685 aa10.49□□□□□ -0.73
VPS29-208ENST00000550267 NLGN4YQ8NFZ3 816 aaPredicted RBP10.49□□□□□ -0.73
VPS29-208ENST00000550267 RXFP2Q8WXD0 754 aa10.49□□□□□ -0.73
VPS29-208ENST00000550267 RTP4Q96DX8 246 aa10.49□□□□□ -0.73
VPS29-208ENST00000550267 TIGD1Q96MW7 591 aa10.49□□□□□ -0.73
VPS29-208ENST00000550267 CTRCQ99895 268 aa10.49□□□□□ -0.73
VPS29-208ENST00000550267 GSDMCQ9BYG8 508 aa10.49□□□□□ -0.73
VPS29-208ENST00000550267 WDR26Q9H7D7 661 aa10.49□□□□□ -0.73
VPS29-208ENST00000550267 ST14Q9Y5Y6 855 aa10.49□□□□□ -0.73
VPS29-208ENST00000550267 UTP20O75691 2785 aaKnown RBP10.48□□□□□ -0.73
VPS29-208ENST00000550267 CFAP69A5D8W1 941 aa10.48□□□□□ -0.73
VPS29-208ENST00000550267 GOLGA6L4A6NEF3 574 aa10.48□□□□□ -0.73
VPS29-208ENST00000550267 A8MX80 341 aa10.48□□□□□ -0.73
VPS29-208ENST00000550267 RASA4BC9J798 803 aa10.48□□□□□ -0.73
VPS29-208ENST00000550267 RASA4O43374 803 aa10.48□□□□□ -0.73
VPS29-208ENST00000550267 ELFN1P0C7U0 828 aa10.48□□□□□ -0.73
VPS29-208ENST00000550267 GNLYP22749 145 aa10.48□□□□□ -0.73
VPS29-208ENST00000550267 MAP4P27816 1152 aaKnown RBP10.48□□□□□ -0.73
VPS29-208ENST00000550267 GNPDA1P46926 289 aa10.48□□□□□ -0.73
VPS29-208ENST00000550267 RGRP47804 291 aa10.48□□□□□ -0.73
VPS29-208ENST00000550267 BPIFB4P59827 614 aa10.48□□□□□ -0.73
VPS29-208ENST00000550267 ILF3Q12906 894 aaKnown RBP eCLIP10.48□□□□□ -0.73
VPS29-208ENST00000550267 SQSTM1Q13501 440 aa10.48□□□□□ -0.73
VPS29-208ENST00000550267 SEPT6Q14141 434 aa10.48□□□□□ -0.73
VPS29-208ENST00000550267 NAA35Q5VZE5 725 aa10.48□□□□□ -0.73
VPS29-208ENST00000550267 PNCKQ6P2M8 343 aa10.48□□□□□ -0.73
VPS29-208ENST00000550267 TMEM71Q6P5X7 295 aa10.48□□□□□ -0.73
VPS29-208ENST00000550267 SLC30A9Q6PML9 568 aa10.48□□□□□ -0.73
VPS29-208ENST00000550267 ARCQ7LC44 396 aa10.48□□□□□ -0.73
VPS29-208ENST00000550267 NAGSQ8N159 534 aa10.48□□□□□ -0.73
VPS29-208ENST00000550267 PYROXD2Q8N2H3 581 aa10.48□□□□□ -0.73
VPS29-208ENST00000550267 RTL3Q8N8U3 475 aaKnown RBP10.48□□□□□ -0.73
VPS29-208ENST00000550267 TEX19Q8NA77 164 aa10.48□□□□□ -0.73
VPS29-208ENST00000550267 JOSD2Q8TAC2 188 aa10.48□□□□□ -0.73
VPS29-208ENST00000550267 CPA5Q8WXQ8 436 aa10.48□□□□□ -0.73
VPS29-208ENST00000550267 STARD8Q92502 1023 aa10.48□□□□□ -0.73
VPS29-208ENST00000550267 ZNF641Q96N77 438 aaPredicted RBP10.48□□□□□ -0.73
VPS29-208ENST00000550267 EFHD1Q9BUP0 239 aa10.48□□□□□ -0.73
VPS29-208ENST00000550267 ZMYND15Q9H091 742 aa10.48□□□□□ -0.73
VPS29-208ENST00000550267 UBA2Q9UBT2 640 aaPredicted RBP10.48□□□□□ -0.73
VPS29-208ENST00000550267 MRPS18BQ9Y676 258 aaKnown RBP10.48□□□□□ -0.73
VPS29-208ENST00000550267 GTPBP10A4D1E9 387 aaKnown RBP10.47□□□□□ -0.73
VPS29-208ENST00000550267 A8MU76 341 aa10.47□□□□□ -0.73
VPS29-208ENST00000550267 PDE2AO00408 941 aaPredicted RBP10.47□□□□□ -0.73
VPS29-208ENST00000550267 VPS4BO75351 444 aa10.47□□□□□ -0.73
VPS29-208ENST00000550267 FGFR1OPO95684 399 aaKnown RBP10.47□□□□□ -0.73
VPS29-208ENST00000550267 CEACAM5P06731 702 aa10.47□□□□□ -0.73
VPS29-208ENST00000550267 MYCLP1P12525 358 aaPredicted RBP10.47□□□□□ -0.73
VPS29-208ENST00000550267 CYP11B1P15538 503 aa10.47□□□□□ -0.73
VPS29-208ENST00000550267 TCN2P20062 427 aa10.47□□□□□ -0.73
VPS29-208ENST00000550267 EPHB2P29323 1055 aa10.47□□□□□ -0.73
VPS29-208ENST00000550267 SDC4P31431 198 aa10.47□□□□□ -0.73
VPS29-208ENST00000550267 PPM1FP49593 454 aaPredicted RBP10.47□□□□□ -0.73
VPS29-208ENST00000550267 HDAC4P56524 1084 aa10.47□□□□□ -0.73
VPS29-208ENST00000550267 YBEYP58557 167 aaPredicted RBP10.47□□□□□ -0.73
VPS29-208ENST00000550267 NOMO3P69849 1222 aa10.47□□□□□ -0.73
VPS29-208ENST00000550267 MC2RQ01718 297 aa10.47□□□□□ -0.73
VPS29-208ENST00000550267 ABHD18Q0P651 414 aa10.47□□□□□ -0.73
VPS29-208ENST00000550267 GRM3Q14832 879 aa10.47□□□□□ -0.73
VPS29-208ENST00000550267 ACOX1Q15067 660 aa10.47□□□□□ -0.73
VPS29-208ENST00000550267 SNAP47Q5SQN1 464 aa10.47□□□□□ -0.73
VPS29-208ENST00000550267 FHL5Q5TD97 284 aa10.47□□□□□ -0.73
VPS29-208ENST00000550267 CAPRIN2Q6IMN6 1127 aaKnown RBP10.47□□□□□ -0.73
VPS29-208ENST00000550267 KDELC2Q7Z4H8 507 aa10.47□□□□□ -0.73
VPS29-208ENST00000550267 ZNF761Q86XN6 746 aaPredicted RBP10.47□□□□□ -0.73
VPS29-208ENST00000550267 MSANTD4Q8NCY6 345 aa10.47□□□□□ -0.73
VPS29-208ENST00000550267 GPT2Q8TD30 523 aa10.47□□□□□ -0.73
VPS29-208ENST00000550267 TEFMQ96QE5 360 aaKnown RBP10.47□□□□□ -0.73
VPS29-208ENST00000550267 TUBGCP5Q96RT8 1024 aa10.47□□□□□ -0.73
VPS29-208ENST00000550267 DPYSL5Q9BPU6 564 aa10.47□□□□□ -0.73
VPS29-208ENST00000550267 FRMD8Q9BZ67 464 aaPredicted RBP10.47□□□□□ -0.73
VPS29-208ENST00000550267 PDFQ9HBH1 243 aa10.47□□□□□ -0.73
VPS29-208ENST00000550267 APMAPQ9HDC9 416 aa10.47□□□□□ -0.73
VPS29-208ENST00000550267 TRNAU1APQ9NX07 287 aaKnown RBP10.47□□□□□ -0.73
VPS29-208ENST00000550267 SUFUQ9UMX1 484 aa10.47□□□□□ -0.73
VPS29-208ENST00000550267 VPS4AQ9UN37 437 aa10.47□□□□□ -0.73
VPS29-208ENST00000550267 LRRK2Q5S007 2527 aa10.47□□□□□ -0.73
VPS29-208ENST00000550267 USP9YO00507 2555 aaPredicted RBP10.46□□□□□ -0.73
VPS29-208ENST00000550267 A1L4Q6 167 aa10.46□□□□□ -0.73
VPS29-208ENST00000550267 J3KR12 359 aa10.46□□□□□ -0.73
VPS29-208ENST00000550267 STK17BO94768 372 aa10.46□□□□□ -0.73
VPS29-208ENST00000550267 LSM8O95777 96 aaKnown RBP10.46□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms