RNA–Protein interactions for RNA: ENST00000546820.5

PTCH1-213, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 864 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-213ENST00000546820 TRIM23P36406 574 aa13.72□□□□□ -0.21
PTCH1-213ENST00000546820 NXPH1P58417 271 aa13.72□□□□□ -0.21
PTCH1-213ENST00000546820 DCDC1P59894 354 aa13.72□□□□□ -0.21
PTCH1-213ENST00000546820 SEPT6Q14141 434 aa13.72□□□□□ -0.21
PTCH1-213ENST00000546820 KCNJ11Q14654 390 aa13.72□□□□□ -0.21
PTCH1-213ENST00000546820 POU6F1Q14863 301 aa13.72□□□□□ -0.21
PTCH1-213ENST00000546820 SF3A2Q15428 464 aaKnown RBP13.72□□□□□ -0.21
PTCH1-213ENST00000546820 KIF19Q2TAC6 998 aa13.72□□□□□ -0.21
PTCH1-213ENST00000546820 AASDHQ4L235 1098 aaPredicted RBP13.72□□□□□ -0.21
PTCH1-213ENST00000546820 PRR23CQ6ZRP0 262 aa13.72□□□□□ -0.21
PTCH1-213ENST00000546820 HOOK3Q86VS8 718 aa13.72□□□□□ -0.21
PTCH1-213ENST00000546820 OR13H1Q8NG92 308 aa13.72□□□□□ -0.21
PTCH1-213ENST00000546820 DTX3LQ8TDB6 740 aa13.72□□□□□ -0.21
PTCH1-213ENST00000546820 STYXQ8WUJ0 223 aa13.72□□□□□ -0.21
PTCH1-213ENST00000546820 CPT1BQ92523 772 aa13.72□□□□□ -0.21
PTCH1-213ENST00000546820 SCAMP4Q969E2 229 aa13.72□□□□□ -0.21
PTCH1-213ENST00000546820 EID2BQ96D98 161 aa13.72□□□□□ -0.21
PTCH1-213ENST00000546820 ZSCAN5AQ9BUG6 496 aa13.72□□□□□ -0.21
PTCH1-213ENST00000546820 RIOK2Q9BVS4 552 aaKnown RBP13.72□□□□□ -0.21
PTCH1-213ENST00000546820 GTPBP2Q9BX10 602 aaKnown RBP13.72□□□□□ -0.21
PTCH1-213ENST00000546820 SPATA16Q9BXB7 569 aa13.72□□□□□ -0.21
PTCH1-213ENST00000546820 FRMD8Q9BZ67 464 aaPredicted RBP13.72□□□□□ -0.21
PTCH1-213ENST00000546820 IL22Q9GZX6 179 aa13.72□□□□□ -0.21
PTCH1-213ENST00000546820 RAB17Q9H0T7 212 aa13.72□□□□□ -0.21
PTCH1-213ENST00000546820 SMOC1Q9H4F8 434 aa13.72□□□□□ -0.21
PTCH1-213ENST00000546820 ERVMER34-1Q9H9K5 563 aa13.72□□□□□ -0.21
PTCH1-213ENST00000546820 XAB2Q9HCS7 855 aaKnown RBP13.72□□□□□ -0.21
PTCH1-213ENST00000546820 BPIFA1Q9NP55 256 aa13.72□□□□□ -0.21
PTCH1-213ENST00000546820 PHPT1Q9NRX4 125 aaPredicted RBP13.72□□□□□ -0.21
PTCH1-213ENST00000546820 APPL1Q9UKG1 709 aa13.72□□□□□ -0.21
PTCH1-213ENST00000546820 UTP11Q9Y3A2 253 aaKnown RBP13.72□□□□□ -0.21
PTCH1-213ENST00000546820 PI4KAP42356 2102 aa13.72□□□□□ -0.21
PTCH1-213ENST00000546820 LRRK1Q38SD2 2015 aa13.71□□□□□ -0.21
PTCH1-213ENST00000546820 MAGEB16A2A368 324 aa13.71□□□□□ -0.21
PTCH1-213ENST00000546820 CER1O95813 267 aa13.71□□□□□ -0.21
PTCH1-213ENST00000546820 BPIP17213 487 aa13.71□□□□□ -0.21
PTCH1-213ENST00000546820 SPAM1P38567 509 aa13.71□□□□□ -0.21
PTCH1-213ENST00000546820 PLA2G5P39877 138 aa13.71□□□□□ -0.21
PTCH1-213ENST00000546820 GRIA1P42261 906 aa13.71□□□□□ -0.21
PTCH1-213ENST00000546820 CTSKP43235 329 aa13.71□□□□□ -0.21
PTCH1-213ENST00000546820 SESN2P58004 480 aaPredicted RBP13.71□□□□□ -0.21
PTCH1-213ENST00000546820 MSLNQ13421 630 aaPredicted RBP13.71□□□□□ -0.21
PTCH1-213ENST00000546820 PDE1CQ14123 709 aaPredicted RBP13.71□□□□□ -0.21
PTCH1-213ENST00000546820 PCID2Q5JVF3 399 aa13.71□□□□□ -0.21
PTCH1-213ENST00000546820 CERCAMQ5T4B2 595 aa13.71□□□□□ -0.21
PTCH1-213ENST00000546820 HENMT1Q5T8I9 393 aaKnown RBP13.71□□□□□ -0.21
PTCH1-213ENST00000546820 IZUMO3Q5VZ72 239 aa13.71□□□□□ -0.21
PTCH1-213ENST00000546820 ARMC3Q5W041 872 aa13.71□□□□□ -0.21
PTCH1-213ENST00000546820 PDPK2PQ6A1A2 396 aa13.71□□□□□ -0.21
PTCH1-213ENST00000546820 ADAMTSL4Q6UY14 1074 aa13.71□□□□□ -0.21
PTCH1-213ENST00000546820 RFLNAQ6ZTI6 216 aa13.71□□□□□ -0.21
PTCH1-213ENST00000546820 TRAM1L1Q8N609 369 aa13.71□□□□□ -0.21
PTCH1-213ENST00000546820 PLA2G15Q8NCC3 412 aa13.71□□□□□ -0.21
PTCH1-213ENST00000546820 GPR26Q8NDV2 337 aa13.71□□□□□ -0.21
PTCH1-213ENST00000546820 OR4K2Q8NGD2 314 aa13.71□□□□□ -0.21
PTCH1-213ENST00000546820 RANBP9Q96S59 729 aa13.71□□□□□ -0.21
PTCH1-213ENST00000546820 ERP44Q9BS26 406 aa13.71□□□□□ -0.21
PTCH1-213ENST00000546820 WDR26Q9H7D7 661 aa13.71□□□□□ -0.21
PTCH1-213ENST00000546820 PARD6AQ9NPB6 346 aa13.71□□□□□ -0.21
PTCH1-213ENST00000546820 PIH1D1Q9NWS0 290 aaKnown RBP13.71□□□□□ -0.21
PTCH1-213ENST00000546820 NFKBIL1Q9UBC1 381 aaPredicted RBP13.71□□□□□ -0.21
PTCH1-213ENST00000546820 SNX11Q9Y5W9 270 aa13.71□□□□□ -0.21
PTCH1-213ENST00000546820 ARL5AQ9Y689 179 aa13.71□□□□□ -0.21
PTCH1-213ENST00000546820 PLXNA2O75051 1894 aa13.71□□□□□ -0.21
PTCH1-213ENST00000546820 SPTY2D1-AS1A0A0U1RR47 76 aa13.7□□□□□ -0.22
PTCH1-213ENST00000546820 TCRBV7S3A2A0A539 114 aa13.7□□□□□ -0.22
PTCH1-213ENST00000546820 SDR42E2A6NKP2 422 aa13.7□□□□□ -0.22
PTCH1-213ENST00000546820 LDB2O43679 373 aa13.7□□□□□ -0.22
PTCH1-213ENST00000546820 BUD23O43709 281 aaKnown RBP13.7□□□□□ -0.22
PTCH1-213ENST00000546820 TGM1P22735 817 aa13.7□□□□□ -0.22
PTCH1-213ENST00000546820 ARRB1P49407 418 aaPredicted RBP13.7□□□□□ -0.22
PTCH1-213ENST00000546820 KIAA1024LP59773 190 aa13.7□□□□□ -0.22
PTCH1-213ENST00000546820 GRIK2Q13002 908 aa13.7□□□□□ -0.22
PTCH1-213ENST00000546820 CALCOCO2Q13137 446 aa13.7□□□□□ -0.22
PTCH1-213ENST00000546820 ITGA9Q13797 1035 aa13.7□□□□□ -0.22
PTCH1-213ENST00000546820 NFATC4Q14934 902 aa13.7□□□□□ -0.22
PTCH1-213ENST00000546820 MORF4L2Q15014 288 aa13.7□□□□□ -0.22
PTCH1-213ENST00000546820 HLA-BQ31612 363 aa13.7□□□□□ -0.22
PTCH1-213ENST00000546820 RNASEH2BQ5TBB1 312 aaKnown RBP13.7□□□□□ -0.22
PTCH1-213ENST00000546820 ALS2CLQ60I27 953 aa13.7□□□□□ -0.22
PTCH1-213ENST00000546820 TCEAL6Q6IPX3 200 aa13.7□□□□□ -0.22
PTCH1-213ENST00000546820 ENPP7Q6UWV6 458 aa13.7□□□□□ -0.22
PTCH1-213ENST00000546820 LAYNQ6UX15 382 aa13.7□□□□□ -0.22
PTCH1-213ENST00000546820 MMGT1Q8N4V1 131 aa13.7□□□□□ -0.22
PTCH1-213ENST00000546820 NAT8LQ8N9F0 302 aa13.7□□□□□ -0.22
PTCH1-213ENST00000546820 PPHLN1Q8NEY8 458 aaKnown RBP13.7□□□□□ -0.22
PTCH1-213ENST00000546820 PEX13Q92968 403 aa13.7□□□□□ -0.22
PTCH1-213ENST00000546820 TCEAL3Q969E4 200 aa13.7□□□□□ -0.22
PTCH1-213ENST00000546820 SNF8Q96H20 258 aa13.7□□□□□ -0.22
PTCH1-213ENST00000546820 HIC2Q96JB3 615 aa13.7□□□□□ -0.22
PTCH1-213ENST00000546820 ELF4Q99607 663 aaPredicted RBP13.7□□□□□ -0.22
PTCH1-213ENST00000546820 TRIM51Q9BSJ1 452 aa13.7□□□□□ -0.22
PTCH1-213ENST00000546820 TEX101Q9BY14 249 aa13.7□□□□□ -0.22
PTCH1-213ENST00000546820 TRIM31Q9BZY9 425 aa13.7□□□□□ -0.22
PTCH1-213ENST00000546820 IL26Q9NPH9 171 aa13.7□□□□□ -0.22
PTCH1-213ENST00000546820 NLE1Q9NVX2 485 aaPredicted RBP13.7□□□□□ -0.22
PTCH1-213ENST00000546820 ANAPC5Q9UJX4 755 aa13.7□□□□□ -0.22
PTCH1-213ENST00000546820 RIMKLBQ9ULI2 386 aa13.7□□□□□ -0.22
PTCH1-213ENST00000546820 OR1A2Q9Y585 309 aa13.7□□□□□ -0.22
PTCH1-213ENST00000546820 GLYATL1P3A0A0U1RQE8 302 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms