RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 CAPN8A6NHC0 703 aa8.45□□□□□ -1.06
USP28-215ENST00000545608 NPIPB15A6NHN6 443 aaPredicted RBP8.45□□□□□ -1.06
USP28-215ENST00000545608 PDE2AO00408 941 aaPredicted RBP8.45□□□□□ -1.06
USP28-215ENST00000545608 NVLO15381 856 aaKnown RBP8.45□□□□□ -1.06
USP28-215ENST00000545608 NUDT21O43809 227 aaKnown RBP8.45□□□□□ -1.06
USP28-215ENST00000545608 SOCS5O75159 536 aa8.45□□□□□ -1.06
USP28-215ENST00000545608 PGLSO95336 258 aa8.45□□□□□ -1.06
USP28-215ENST00000545608 MBD3O95983 291 aa8.45□□□□□ -1.06
USP28-215ENST00000545608 JMJD7P0C870 316 aa8.45□□□□□ -1.06
USP28-215ENST00000545608 CYP2A6P11509 494 aaPredicted RBP8.45□□□□□ -1.06
USP28-215ENST00000545608 MYCLP1P12525 358 aaPredicted RBP8.45□□□□□ -1.06
USP28-215ENST00000545608 CCNB1P14635 433 aa8.45□□□□□ -1.06
USP28-215ENST00000545608 CTPS1P17812 591 aa8.45□□□□□ -1.06
USP28-215ENST00000545608 IL4RP24394 825 aa8.45□□□□□ -1.06
USP28-215ENST00000545608 AK4P27144 223 aaPredicted RBP8.45□□□□□ -1.06
USP28-215ENST00000545608 HSPA9P38646 679 aaKnown RBP8.45□□□□□ -1.06
USP28-215ENST00000545608 GNPDA1P46926 289 aa8.45□□□□□ -1.06
USP28-215ENST00000545608 POLD2P49005 469 aa8.45□□□□□ -1.06
USP28-215ENST00000545608 OR1D5P58170 312 aa8.45□□□□□ -1.06
USP28-215ENST00000545608 CDK3Q00526 305 aa8.45□□□□□ -1.06
USP28-215ENST00000545608 DHX9Q08211 1270 aaKnown RBP8.45□□□□□ -1.06
USP28-215ENST00000545608 IHHQ14623 411 aa8.45□□□□□ -1.06
USP28-215ENST00000545608 AMZ1Q400G9 498 aa8.45□□□□□ -1.06
USP28-215ENST00000545608 HGSNATQ68CP4 663 aa8.45□□□□□ -1.06
USP28-215ENST00000545608 ZNF574Q6ZN55 896 aaPredicted RBP8.45□□□□□ -1.06
USP28-215ENST00000545608 Q6ZVL8 140 aa8.45□□□□□ -1.06
USP28-215ENST00000545608 USP53Q70EK8 1073 aa8.45□□□□□ -1.06
USP28-215ENST00000545608 TECPR1Q7Z6L1 1165 aa8.45□□□□□ -1.06
USP28-215ENST00000545608 ZFAND4Q86XD8 727 aa8.45□□□□□ -1.06
USP28-215ENST00000545608 SLITRK4Q8IW52 837 aa8.45□□□□□ -1.06
USP28-215ENST00000545608 ZDHHC1Q8WTX9 485 aa8.45□□□□□ -1.06
USP28-215ENST00000545608 PIH1D2Q8WWB5 315 aa8.45□□□□□ -1.06
USP28-215ENST00000545608 PATE1Q8WXA2 126 aa8.45□□□□□ -1.06
USP28-215ENST00000545608 USP7Q93009 1102 aa8.45□□□□□ -1.06
USP28-215ENST00000545608 TRIM11Q96F44 468 aa8.45□□□□□ -1.06
USP28-215ENST00000545608 SCRN2Q96FV2 425 aa8.45□□□□□ -1.06
USP28-215ENST00000545608 FRMD8Q9BZ67 464 aaPredicted RBP8.45□□□□□ -1.06
USP28-215ENST00000545608 THAP2Q9H0W7 228 aa8.45□□□□□ -1.06
USP28-215ENST00000545608 SEMA6CQ9H3T2 930 aa8.45□□□□□ -1.06
USP28-215ENST00000545608 RDH14Q9HBH5 336 aa8.45□□□□□ -1.06
USP28-215ENST00000545608 PHPT1Q9NRX4 125 aaPredicted RBP8.45□□□□□ -1.06
USP28-215ENST00000545608 STAU2Q9NUL3 570 aaKnown RBP eCLIP8.45□□□□□ -1.06
USP28-215ENST00000545608 FOXJ2Q9P0K8 574 aa8.45□□□□□ -1.06
USP28-215ENST00000545608 TAAR2Q9P1P5 351 aa8.45□□□□□ -1.06
USP28-215ENST00000545608 ACSL6Q9UKU0 697 aa8.45□□□□□ -1.06
USP28-215ENST00000545608 SUFUQ9UMX1 484 aa8.45□□□□□ -1.06
USP28-215ENST00000545608 PLEKHM1Q9Y4G2 1056 aa8.45□□□□□ -1.06
USP28-215ENST00000545608 AHCTF1Q8WYP5 2266 aa8.45□□□□□ -1.06
USP28-215ENST00000545608 LOC400499M0QZD8 3231 aa8.44□□□□□ -1.06
USP28-215ENST00000545608 PRAMEF33A0A0G2JMD5 474 aa8.44□□□□□ -1.06
USP28-215ENST00000545608 GOLGA6CA6NDK9 693 aa8.44□□□□□ -1.06
USP28-215ENST00000545608 GOLGA6BA6NDN3 693 aa8.44□□□□□ -1.06
USP28-215ENST00000545608 B8ZZF3 427 aa8.44□□□□□ -1.06
USP28-215ENST00000545608 C9orf172C9J069 976 aa8.44□□□□□ -1.06
USP28-215ENST00000545608 J3QKU1 62 aa8.44□□□□□ -1.06
USP28-215ENST00000545608 PSMD11O00231 422 aa8.44□□□□□ -1.06
USP28-215ENST00000545608 FZD6O60353 706 aa8.44□□□□□ -1.06
USP28-215ENST00000545608 PRAMEF10O60809 474 aa8.44□□□□□ -1.06
USP28-215ENST00000545608 ECEL1O95672 775 aa8.44□□□□□ -1.06
USP28-215ENST00000545608 PDHA1P08559 390 aa8.44□□□□□ -1.06
USP28-215ENST00000545608 CD48P09326 243 aa8.44□□□□□ -1.06
USP28-215ENST00000545608 GOLGA6DP0CG33 693 aa8.44□□□□□ -1.06
USP28-215ENST00000545608 ALDH4A1P30038 563 aa8.44□□□□□ -1.06
USP28-215ENST00000545608 ADCY8P40145 1251 aa8.44□□□□□ -1.06
USP28-215ENST00000545608 MMP13P45452 471 aa8.44□□□□□ -1.06
USP28-215ENST00000545608 ZNF165P49910 485 aa8.44□□□□□ -1.06
USP28-215ENST00000545608 MAPK10P53779 464 aa8.44□□□□□ -1.06
USP28-215ENST00000545608 CTBSQ01459 385 aa8.44□□□□□ -1.06
USP28-215ENST00000545608 SLC25A11Q02978 314 aaKnown RBP8.44□□□□□ -1.06
USP28-215ENST00000545608 ILF3Q12906 894 aaKnown RBP eCLIP8.44□□□□□ -1.06
USP28-215ENST00000545608 MMRN1Q13201 1228 aa8.44□□□□□ -1.06
USP28-215ENST00000545608 PIGHQ14442 188 aaPredicted RBP8.44□□□□□ -1.06
USP28-215ENST00000545608 C16orf72Q14CZ0 275 aa8.44□□□□□ -1.06
USP28-215ENST00000545608 IQCB1Q15051 598 aa8.44□□□□□ -1.06
USP28-215ENST00000545608 OCLNQ16625 522 aa8.44□□□□□ -1.06
USP28-215ENST00000545608 LINC00303Q3SY05 128 aa8.44□□□□□ -1.06
USP28-215ENST00000545608 ATP13A4Q4VNC1 1196 aa8.44□□□□□ -1.06
USP28-215ENST00000545608 FIGNQ5HY92 759 aa8.44□□□□□ -1.06
USP28-215ENST00000545608 PHF19Q5T6S3 580 aa8.44□□□□□ -1.06
USP28-215ENST00000545608 ARMC12Q5T9G4 340 aa8.44□□□□□ -1.06
USP28-215ENST00000545608 MARC1Q5VT66 337 aa8.44□□□□□ -1.06
USP28-215ENST00000545608 RAET1GQ6H3X3 334 aa8.44□□□□□ -1.06
USP28-215ENST00000545608 SLC30A9Q6PML9 568 aa8.44□□□□□ -1.06
USP28-215ENST00000545608 ZNF438Q7Z4V0 828 aa8.44□□□□□ -1.06
USP28-215ENST00000545608 NAGSQ8N159 534 aa8.44□□□□□ -1.06
USP28-215ENST00000545608 BBS5Q8N3I7 341 aa8.44□□□□□ -1.06
USP28-215ENST00000545608 ATPAF2Q8N5M1 289 aa8.44□□□□□ -1.06
USP28-215ENST00000545608 TEX26Q8N6G2 289 aa8.44□□□□□ -1.06
USP28-215ENST00000545608 EXD3Q8N9H8 876 aa8.44□□□□□ -1.06
USP28-215ENST00000545608 KIAA1524Q8TCG1 905 aa8.44□□□□□ -1.06
USP28-215ENST00000545608 TEKT4Q8WW24 435 aa8.44□□□□□ -1.06
USP28-215ENST00000545608 MED8Q96G25 268 aa8.44□□□□□ -1.06
USP28-215ENST00000545608 MCCC1Q96RQ3 725 aaPredicted RBP8.44□□□□□ -1.06
USP28-215ENST00000545608 CMKLR1Q99788 373 aa8.44□□□□□ -1.06
USP28-215ENST00000545608 SEMA3CQ99985 751 aa8.44□□□□□ -1.06
USP28-215ENST00000545608 FUCA2Q9BTY2 467 aa8.44□□□□□ -1.06
USP28-215ENST00000545608 GSDMCQ9BYG8 508 aa8.44□□□□□ -1.06
USP28-215ENST00000545608 ABCG8Q9H221 673 aa8.44□□□□□ -1.06
USP28-215ENST00000545608 NT5MQ9NPB1 228 aa8.44□□□□□ -1.06
USP28-215ENST00000545608 TRNAU1APQ9NX07 287 aaKnown RBP8.44□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms