RNA–Protein interactions for RNA: ENST00000545308.5

SNHG1-222, Transcript of small nucleolar RNA host gene 1, human

TSL 2

Gene SNHG1, Length 646 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-222	ENST00000545308	EARS2	Q5JPH6	523 aa	Known RBP	4.2	□□□□□ -1.74
SNHG1-222	ENST00000545308	LCE1A	Q5T7P2	110 aa		4.2	□□□□□ -1.74
SNHG1-222	ENST00000545308	FBXO46	Q6PJ61	603 aa	Predicted RBP	4.2	□□□□□ -1.74
SNHG1-222	ENST00000545308	LCTL	Q6UWM7	567 aa		4.2	□□□□□ -1.74
SNHG1-222	ENST00000545308	LRIG3	Q6UXM1	1119 aa		4.2	□□□□□ -1.74
SNHG1-222	ENST00000545308	HAPLN4	Q86UW8	402 aa		4.2	□□□□□ -1.74
SNHG1-222	ENST00000545308	AACS	Q86V21	672 aa		4.2	□□□□□ -1.74
SNHG1-222	ENST00000545308	SYT2	Q8N9I0	419 aa	Predicted RBP	4.2	□□□□□ -1.74
SNHG1-222	ENST00000545308	TDRD5	Q8NAT2	981 aa	Known RBP	4.2	□□□□□ -1.74
SNHG1-222	ENST00000545308	POGLUT1	Q8NBL1	392 aa		4.2	□□□□□ -1.74
SNHG1-222	ENST00000545308	GJC3	Q8NFK1	279 aa		4.2	□□□□□ -1.74
SNHG1-222	ENST00000545308	WIPF2	Q8TF74	440 aa	Predicted RBP	4.2	□□□□□ -1.74
SNHG1-222	ENST00000545308	SGCD	Q92629	289 aa		4.2	□□□□□ -1.74
SNHG1-222	ENST00000545308	SIN3A	Q96ST3	1273 aa		4.2	□□□□□ -1.74
SNHG1-222	ENST00000545308	PAFAH2	Q99487	392 aa		4.2	□□□□□ -1.74
SNHG1-222	ENST00000545308	NCAPG	Q9BPX3	1015 aa		4.2	□□□□□ -1.74
SNHG1-222	ENST00000545308	MXRA8	Q9BRK3	442 aa		4.2	□□□□□ -1.74
SNHG1-222	ENST00000545308	SYT17	Q9BSW7	474 aa		4.2	□□□□□ -1.74
SNHG1-222	ENST00000545308	SLC35C2	Q9NQQ7	365 aa		4.2	□□□□□ -1.74
SNHG1-222	ENST00000545308	CPSF2	Q9P2I0	782 aa	Known RBP	4.2	□□□□□ -1.74
SNHG1-222	ENST00000545308	WDR35	Q9P2L0	1181 aa		4.2	□□□□□ -1.74
SNHG1-222	ENST00000545308	ARPP21	Q9UBL0	812 aa	Predicted RBP	4.2	□□□□□ -1.74
SNHG1-222	ENST00000545308	IPO11	Q9UI26	975 aa	Known RBP	4.2	□□□□□ -1.74
SNHG1-222	ENST00000545308	UTS2R	Q9UKP6	389 aa		4.2	□□□□□ -1.74
SNHG1-222	ENST00000545308	LAMP3	Q9UQV4	416 aa		4.2	□□□□□ -1.74
SNHG1-222	ENST00000545308	TRPV2	Q9Y5S1	764 aa		4.2	□□□□□ -1.74
SNHG1-222	ENST00000545308	KIF1A	Q12756	1690 aa		4.19	□□□□□ -1.74
SNHG1-222	ENST00000545308	hCG_1809904	A0A1W2PP81	198 aa		4.19	□□□□□ -1.74
SNHG1-222	ENST00000545308		A0A1W2PPE2	198 aa		4.19	□□□□□ -1.74
SNHG1-222	ENST00000545308		A0A1W2PR64	198 aa		4.19	□□□□□ -1.74
SNHG1-222	ENST00000545308		A0A1W2PR77	199 aa		4.19	□□□□□ -1.74
SNHG1-222	ENST00000545308	FOXO6	A8MYZ6	492 aa		4.19	□□□□□ -1.74
SNHG1-222	ENST00000545308	RNMT	O43148	476 aa	Known RBP	4.19	□□□□□ -1.74
SNHG1-222	ENST00000545308	TOP3B	O95985	862 aa	Known RBP	4.19	□□□□□ -1.74
SNHG1-222	ENST00000545308	AFP	P02771	609 aa	Known RBP	4.19	□□□□□ -1.74
SNHG1-222	ENST00000545308	LCK	P06239	509 aa		4.19	□□□□□ -1.74
SNHG1-222	ENST00000545308	SRPRA	P08240	638 aa	Known RBP	4.19	□□□□□ -1.74
SNHG1-222	ENST00000545308	UNG	P13051	313 aa	Predicted RBP	4.19	□□□□□ -1.74
SNHG1-222	ENST00000545308	TRIM21	P19474	475 aa	Known RBP	4.19	□□□□□ -1.74
SNHG1-222	ENST00000545308	AGA	P20933	346 aa		4.19	□□□□□ -1.74
SNHG1-222	ENST00000545308	PIK3CA	P42336	1068 aa		4.19	□□□□□ -1.74
SNHG1-222	ENST00000545308	STAT2	P52630	851 aa		4.19	□□□□□ -1.74
SNHG1-222	ENST00000545308	BAAT	Q14032	418 aa	Predicted RBP	4.19	□□□□□ -1.74
SNHG1-222	ENST00000545308	SCARB2	Q14108	478 aa		4.19	□□□□□ -1.74
SNHG1-222	ENST00000545308	SHB	Q15464	509 aa		4.19	□□□□□ -1.74
SNHG1-222	ENST00000545308	CERKL	Q49MI3	558 aa	Predicted RBP	4.19	□□□□□ -1.74
SNHG1-222	ENST00000545308	CDON	Q4KMG0	1287 aa		4.19	□□□□□ -1.74
SNHG1-222	ENST00000545308	SOWAHC	Q53LP3	525 aa	Predicted RBP	4.19	□□□□□ -1.74
SNHG1-222	ENST00000545308	ENTPD8	Q5MY95	495 aa		4.19	□□□□□ -1.74
SNHG1-222	ENST00000545308	AKNAD1	Q5T1N1	836 aa		4.19	□□□□□ -1.74
SNHG1-222	ENST00000545308	LRIF1	Q5T3J3	769 aa		4.19	□□□□□ -1.74
SNHG1-222	ENST00000545308	PRAMEF17	Q5VTA0	474 aa		4.19	□□□□□ -1.74
SNHG1-222	ENST00000545308	IL27RA	Q6UWB1	636 aa		4.19	□□□□□ -1.74
SNHG1-222	ENST00000545308	ZNF788	Q6ZQV5	615 aa		4.19	□□□□□ -1.74
SNHG1-222	ENST00000545308	SEPT14	Q6ZU15	432 aa		4.19	□□□□□ -1.74
SNHG1-222	ENST00000545308	KDELC2	Q7Z4H8	507 aa		4.19	□□□□□ -1.74
SNHG1-222	ENST00000545308	C1QL2	Q7Z5L3	287 aa		4.19	□□□□□ -1.74
SNHG1-222	ENST00000545308	DNAJB7	Q7Z6W7	309 aa	Predicted RBP	4.19	□□□□□ -1.74
SNHG1-222	ENST00000545308	SLFN11	Q7Z7L1	901 aa		4.19	□□□□□ -1.74
SNHG1-222	ENST00000545308	SERPINA11	Q86U17	422 aa		4.19	□□□□□ -1.74
SNHG1-222	ENST00000545308	SLC35F3	Q8IY50	421 aa		4.19	□□□□□ -1.74
SNHG1-222	ENST00000545308	CCDC13	Q8IYE1	715 aa		4.19	□□□□□ -1.74
SNHG1-222	ENST00000545308	ZCCHC9	Q8N567	271 aa	Known RBP	4.19	□□□□□ -1.74
SNHG1-222	ENST00000545308	POMGNT2	Q8NAT1	580 aa		4.19	□□□□□ -1.74
SNHG1-222	ENST00000545308	MCPH1	Q8NEM0	835 aa		4.19	□□□□□ -1.74
SNHG1-222	ENST00000545308	OSR1	Q8TAX0	266 aa	Predicted RBP	4.19	□□□□□ -1.74
SNHG1-222	ENST00000545308	DUSP19	Q8WTR2	217 aa		4.19	□□□□□ -1.74
SNHG1-222	ENST00000545308	SNAPC3	Q92966	411 aa		4.19	□□□□□ -1.74
SNHG1-222	ENST00000545308	SARAF	Q96BY9	339 aa		4.19	□□□□□ -1.74
SNHG1-222	ENST00000545308	TMCO6	Q96DC7	493 aa		4.19	□□□□□ -1.74
SNHG1-222	ENST00000545308	ZC3HAV1L	Q96H79	300 aa	Known RBP	4.19	□□□□□ -1.74
SNHG1-222	ENST00000545308	ZNF419	Q96HQ0	510 aa	Predicted RBP	4.19	□□□□□ -1.74
SNHG1-222	ENST00000545308	ADPGK	Q9BRR6	497 aa		4.19	□□□□□ -1.74
SNHG1-222	ENST00000545308	C1QTNF7	Q9BXJ2	289 aa		4.19	□□□□□ -1.74
SNHG1-222	ENST00000545308	IFIH1	Q9BYX4	1025 aa	Known RBP	4.19	□□□□□ -1.74
SNHG1-222	ENST00000545308	SLC29A3	Q9BZD2	475 aa		4.19	□□□□□ -1.74
SNHG1-222	ENST00000545308	MVB12B	Q9H7P6	319 aa		4.19	□□□□□ -1.74
SNHG1-222	ENST00000545308	MAGEE1	Q9HCI5	957 aa		4.19	□□□□□ -1.74
SNHG1-222	ENST00000545308	SPAG4	Q9NPE6	437 aa		4.19	□□□□□ -1.74
SNHG1-222	ENST00000545308	DDX4	Q9NQI0	724 aa	Known RBP	4.19	□□□□□ -1.74
SNHG1-222	ENST00000545308	CEPT1	Q9Y6K0	416 aa		4.19	□□□□□ -1.74
SNHG1-222	ENST00000545308	A3GALT2	U3KPV4	340 aa		4.19	□□□□□ -1.74
SNHG1-222	ENST00000545308	USP32	Q8NFA0	1604 aa		4.19	□□□□□ -1.74
SNHG1-222	ENST00000545308	COL14A1	Q05707	1796 aa	Known RBP	4.19	□□□□□ -1.74
SNHG1-222	ENST00000545308		E9PCH4	1651 aa		4.19	□□□□□ -1.74
SNHG1-222	ENST00000545308	PLCH1	Q4KWH8	1693 aa		4.19	□□□□□ -1.74
SNHG1-222	ENST00000545308	PXDN	Q92626	1479 aa		4.18	□□□□□ -1.74
SNHG1-222	ENST00000545308	NUP155	O75694	1391 aa		4.18	□□□□□ -1.74
SNHG1-222	ENST00000545308	GPRASP1	Q5JY77	1395 aa		4.18	□□□□□ -1.74
SNHG1-222	ENST00000545308	TYW5	A2RUC4	315 aa	Known RBP	4.18	□□□□□ -1.74
SNHG1-222	ENST00000545308	RHOD	O00212	210 aa		4.18	□□□□□ -1.74
SNHG1-222	ENST00000545308	CHL1	O00533	1208 aa		4.18	□□□□□ -1.74
SNHG1-222	ENST00000545308	UGDH	O60701	494 aa		4.18	□□□□□ -1.74
SNHG1-222	ENST00000545308	MITF	O75030	526 aa	Predicted RBP	4.18	□□□□□ -1.74
SNHG1-222	ENST00000545308	ATP2C2	O75185	946 aa		4.18	□□□□□ -1.74
SNHG1-222	ENST00000545308	PCNA	P12004	261 aa		4.18	□□□□□ -1.74
SNHG1-222	ENST00000545308	ETFA	P13804	333 aa		4.18	□□□□□ -1.74
SNHG1-222	ENST00000545308	ZNF182	P17025	639 aa	Predicted RBP	4.18	□□□□□ -1.74
SNHG1-222	ENST00000545308	TMEM11	P17152	192 aa		4.18	□□□□□ -1.74
SNHG1-222	ENST00000545308	GPD1	P21695	349 aa		4.18	□□□□□ -1.74

Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms