RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 CENPEQ02224 2701 aa12.79□□□□□ -0.36
USP28-212ENST00000544750 SYCE3A1L190 88 aa12.78□□□□□ -0.36
USP28-212ENST00000544750 LRRC10BA6NIK2 292 aa12.78□□□□□ -0.36
USP28-212ENST00000544750 LGALS16A8MUM7 142 aa12.78□□□□□ -0.36
USP28-212ENST00000544750 HTRA2O43464 458 aaPredicted RBP12.78□□□□□ -0.36
USP28-212ENST00000544750 PALMO75781 387 aa12.78□□□□□ -0.36
USP28-212ENST00000544750 HEXIM1O94992 359 aaKnown RBP12.78□□□□□ -0.36
USP28-212ENST00000544750 SOD1P00441 154 aa12.78□□□□□ -0.36
USP28-212ENST00000544750 NR1D1P20393 614 aa12.78□□□□□ -0.36
USP28-212ENST00000544750 F8A1P23610 371 aa12.78□□□□□ -0.36
USP28-212ENST00000544750 HTR7P34969 479 aa12.78□□□□□ -0.36
USP28-212ENST00000544750 ZNF143P52747 638 aaPredicted RBP12.78□□□□□ -0.36
USP28-212ENST00000544750 MLLT10P55197 1068 aa12.78□□□□□ -0.36
USP28-212ENST00000544750 MC1RQ01726 317 aa12.78□□□□□ -0.36
USP28-212ENST00000544750 PEX6Q13608 980 aa12.78□□□□□ -0.36
USP28-212ENST00000544750 IQCB1Q15051 598 aa12.78□□□□□ -0.36
USP28-212ENST00000544750 CHCHD2P9Q5T1J5 151 aaPredicted RBP12.78□□□□□ -0.36
USP28-212ENST00000544750 TCTN3Q6NUS6 607 aa12.78□□□□□ -0.36
USP28-212ENST00000544750 WDR74Q6RFH5 385 aaPredicted RBP12.78□□□□□ -0.36
USP28-212ENST00000544750 CEACAM20Q6UY09 585 aa12.78□□□□□ -0.36
USP28-212ENST00000544750 NRSN1Q8IZ57 195 aa12.78□□□□□ -0.36
USP28-212ENST00000544750 KIAA1143Q96AT1 154 aaPredicted RBP12.78□□□□□ -0.36
USP28-212ENST00000544750 ZPBPQ9BS86 351 aa12.78□□□□□ -0.36
USP28-212ENST00000544750 TRIT1Q9H3H1 467 aaKnown RBP12.78□□□□□ -0.36
USP28-212ENST00000544750 MRPS18BQ9Y676 258 aaKnown RBP12.78□□□□□ -0.36
USP28-212ENST00000544750 CRYBG3Q68DQ2 2970 aa12.78□□□□□ -0.36
USP28-212ENST00000544750 ARHGAP42A6NI28 874 aa12.77□□□□□ -0.37
USP28-212ENST00000544750 STK17BO94768 372 aa12.77□□□□□ -0.37
USP28-212ENST00000544750 GFPT2O94808 682 aa12.77□□□□□ -0.37
USP28-212ENST00000544750 TCN2P20062 427 aa12.77□□□□□ -0.37
USP28-212ENST00000544750 LHCGRP22888 699 aa12.77□□□□□ -0.37
USP28-212ENST00000544750 ETV3P41162 512 aa12.77□□□□□ -0.37
USP28-212ENST00000544750 ACTR1BP42025 376 aa12.77□□□□□ -0.37
USP28-212ENST00000544750 STAT5AP42229 794 aa12.77□□□□□ -0.37
USP28-212ENST00000544750 UQCRFS1P47985 274 aa12.77□□□□□ -0.37
USP28-212ENST00000544750 JAM2P57087 298 aa12.77□□□□□ -0.37
USP28-212ENST00000544750 TPI1P60174 286 aa12.77□□□□□ -0.37
USP28-212ENST00000544750 ACTR1AP61163 376 aa12.77□□□□□ -0.37
USP28-212ENST00000544750 AP1S1P61966 158 aa12.77□□□□□ -0.37
USP28-212ENST00000544750 MAP7Q14244 749 aa12.77□□□□□ -0.37
USP28-212ENST00000544750 PPP1R15BQ5SWA1 713 aa12.77□□□□□ -0.37
USP28-212ENST00000544750 SCYL2Q6P3W7 929 aa12.77□□□□□ -0.37
USP28-212ENST00000544750 TRIM72Q6ZMU5 477 aa12.77□□□□□ -0.37
USP28-212ENST00000544750 ARHGAP36Q6ZRI8 547 aa12.77□□□□□ -0.37
USP28-212ENST00000544750 HSD11B1LQ7Z5J1 315 aa12.77□□□□□ -0.37
USP28-212ENST00000544750 TECPR1Q7Z6L1 1165 aa12.77□□□□□ -0.37
USP28-212ENST00000544750 ATCAYQ86WG3 371 aa12.77□□□□□ -0.37
USP28-212ENST00000544750 ZNF761Q86XN6 746 aaPredicted RBP12.77□□□□□ -0.37
USP28-212ENST00000544750 PHF13Q86YI8 300 aaPredicted RBP12.77□□□□□ -0.37
USP28-212ENST00000544750 SFRP1Q8N474 314 aa12.77□□□□□ -0.37
USP28-212ENST00000544750 SLC37A2Q8TED4 501 aa12.77□□□□□ -0.37
USP28-212ENST00000544750 PSKH2Q96QS6 385 aa12.77□□□□□ -0.37
USP28-212ENST00000544750 SELENOOQ9BVL4 669 aa12.77□□□□□ -0.37
USP28-212ENST00000544750 CINPQ9BW66 212 aaPredicted RBP12.77□□□□□ -0.37
USP28-212ENST00000544750 DONSONQ9NYP3 566 aa12.77□□□□□ -0.37
USP28-212ENST00000544750 ADAM22Q9P0K1 906 aa12.77□□□□□ -0.37
USP28-212ENST00000544750 KCTD3Q9Y597 815 aa12.77□□□□□ -0.37
USP28-212ENST00000544750 CELSR2Q9HCU4 2923 aa12.77□□□□□ -0.37
USP28-212ENST00000544750 PRRC2CQ9Y520 2896 aaKnown RBP12.76□□□□□ -0.37
USP28-212ENST00000544750 A8MU76 341 aa12.76□□□□□ -0.37
USP28-212ENST00000544750 PSMD11O00231 422 aa12.76□□□□□ -0.37
USP28-212ENST00000544750 EML2O95834 649 aa12.76□□□□□ -0.37
USP28-212ENST00000544750 KRT7P08729 469 aa12.76□□□□□ -0.37
USP28-212ENST00000544750 FURINP09958 794 aa12.76□□□□□ -0.37
USP28-212ENST00000544750 VIPR1P32241 457 aa12.76□□□□□ -0.37
USP28-212ENST00000544750 ZNF165P49910 485 aa12.76□□□□□ -0.37
USP28-212ENST00000544750 SCNN1BP51168 640 aa12.76□□□□□ -0.37
USP28-212ENST00000544750 RPL7AP62424 266 aaKnown RBP12.76□□□□□ -0.37
USP28-212ENST00000544750 DPTQ07507 201 aa12.76□□□□□ -0.37
USP28-212ENST00000544750 IL10RBQ08334 325 aa12.76□□□□□ -0.37
USP28-212ENST00000544750 BIRC2Q13490 618 aa12.76□□□□□ -0.37
USP28-212ENST00000544750 SEPT6Q14141 434 aa12.76□□□□□ -0.37
USP28-212ENST00000544750 RFTN1Q14699 578 aaPredicted RBP12.76□□□□□ -0.37
USP28-212ENST00000544750 SYCP1Q15431 976 aa12.76□□□□□ -0.37
USP28-212ENST00000544750 CA9Q16790 459 aa12.76□□□□□ -0.37
USP28-212ENST00000544750 PYCR3Q53H96 274 aa12.76□□□□□ -0.37
USP28-212ENST00000544750 CAPRIN2Q6IMN6 1127 aaKnown RBP12.76□□□□□ -0.37
USP28-212ENST00000544750 Q6ZVL8 140 aa12.76□□□□□ -0.37
USP28-212ENST00000544750 MON1BQ7L1V2 547 aa12.76□□□□□ -0.37
USP28-212ENST00000544750 NPWQ8N729 165 aa12.76□□□□□ -0.37
USP28-212ENST00000544750 OR10G6Q8NH81 332 aa12.76□□□□□ -0.37
USP28-212ENST00000544750 OR2M4Q96R27 311 aa12.76□□□□□ -0.37
USP28-212ENST00000544750 ERGIC2Q96RQ1 377 aa12.76□□□□□ -0.37
USP28-212ENST00000544750 NAT10Q9H0A0 1025 aaKnown RBP12.76□□□□□ -0.37
USP28-212ENST00000544750 SIDT1Q9NXL6 827 aaKnown RBP12.76□□□□□ -0.37
USP28-212ENST00000544750 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP12.75□□□□□ -0.37
USP28-212ENST00000544750 TTC24A2A3L6 582 aaPredicted RBP12.75□□□□□ -0.37
USP28-212ENST00000544750 SOCS5O75159 536 aa12.75□□□□□ -0.37
USP28-212ENST00000544750 CALB1P05937 261 aa12.75□□□□□ -0.37
USP28-212ENST00000544750 PTMSP20962 102 aa12.75□□□□□ -0.37
USP28-212ENST00000544750 SOX5P35711 763 aa12.75□□□□□ -0.37
USP28-212ENST00000544750 NSFP46459 744 aaKnown RBP12.75□□□□□ -0.37
USP28-212ENST00000544750 OGDHQ02218 1023 aa12.75□□□□□ -0.37
USP28-212ENST00000544750 SLC10A7Q0GE19 358 aa12.75□□□□□ -0.37
USP28-212ENST00000544750 PTPRRQ15256 657 aa12.75□□□□□ -0.37
USP28-212ENST00000544750 CLEC16AQ2KHT3 1053 aa12.75□□□□□ -0.37
USP28-212ENST00000544750 SNAP47Q5SQN1 464 aa12.75□□□□□ -0.37
USP28-212ENST00000544750 FKBP15Q5T1M5 1219 aa12.75□□□□□ -0.37
USP28-212ENST00000544750 RAET1GQ6H3X3 334 aa12.75□□□□□ -0.37
USP28-212ENST00000544750 C16orf46Q6P387 395 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms