RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 APCDD1Q8J025 514 aa16.28■□□□□ 0.2
COL4A1-204ENST00000543140 CPSF7Q8N684 471 aaKnown RBP16.28■□□□□ 0.2
COL4A1-204ENST00000543140 CEP70Q8NHQ1 597 aa16.28■□□□□ 0.2
COL4A1-204ENST00000543140 PYDC1Q8WXC3 89 aa16.28■□□□□ 0.2
COL4A1-204ENST00000543140 RCN3Q96D15 328 aa16.28■□□□□ 0.2
COL4A1-204ENST00000543140 RC3H2Q9HBD1 1191 aaKnown RBP16.28■□□□□ 0.2
COL4A1-204ENST00000543140 INTS10Q9NVR2 710 aaKnown RBP16.28■□□□□ 0.2
COL4A1-204ENST00000543140 STOML2Q9UJZ1 356 aa16.28■□□□□ 0.2
COL4A1-204ENST00000543140 PPM1HQ9ULR3 514 aa16.28■□□□□ 0.2
COL4A1-204ENST00000543140 TRAF6Q9Y4K3 522 aa16.28■□□□□ 0.2
COL4A1-204ENST00000543140 ABHD14A-ACY1A0A1B0GW23 586 aa16.28■□□□□ 0.2
COL4A1-204ENST00000543140 ATP6AP2A0A1C7CYW4 349 aa16.28■□□□□ 0.2
COL4A1-204ENST00000543140 EIF4E1BA6NMX2 242 aaKnown RBP16.28■□□□□ 0.2
COL4A1-204ENST00000543140 STX7O15400 261 aaKnown RBP16.28■□□□□ 0.2
COL4A1-204ENST00000543140 CCNT2O60583 730 aaKnown RBP16.28■□□□□ 0.2
COL4A1-204ENST00000543140 ATP6AP2O75787 350 aa16.28■□□□□ 0.2
COL4A1-204ENST00000543140 PRAMEF12O95522 483 aa16.28■□□□□ 0.2
COL4A1-204ENST00000543140 CKMP06732 381 aa16.28■□□□□ 0.2
COL4A1-204ENST00000543140 CLTBP09497 229 aa16.28■□□□□ 0.2
COL4A1-204ENST00000543140 CTPS1P17812 591 aa16.28■□□□□ 0.2
COL4A1-204ENST00000543140 LAG3P18627 525 aa16.28■□□□□ 0.2
COL4A1-204ENST00000543140 WDR5P61964 334 aaKnown RBP16.28■□□□□ 0.2
COL4A1-204ENST00000543140 HERVK_113P63132 956 aa16.28■□□□□ 0.2
COL4A1-204ENST00000543140 SETMARQ53H47 684 aaPredicted RBP16.28■□□□□ 0.2
COL4A1-204ENST00000543140 ZRANB3Q5FWF4 1079 aa16.28■□□□□ 0.2
COL4A1-204ENST00000543140 NCEH1Q6PIU2 408 aa16.28■□□□□ 0.2
COL4A1-204ENST00000543140 HS6ST3Q8IZP7 471 aa16.28■□□□□ 0.2
COL4A1-204ENST00000543140 HJURPQ8NCD3 748 aaPredicted RBP16.28■□□□□ 0.2
COL4A1-204ENST00000543140 DDI1Q8WTU0 396 aa16.28■□□□□ 0.2
COL4A1-204ENST00000543140 DNAJC9Q8WXX5 260 aa16.28■□□□□ 0.2
COL4A1-204ENST00000543140 MAELQ96JY0 434 aaKnown RBP16.28■□□□□ 0.2
COL4A1-204ENST00000543140 YME1L1Q96TA2 773 aa16.28■□□□□ 0.2
COL4A1-204ENST00000543140 GPR21Q99679 349 aa16.28■□□□□ 0.2
COL4A1-204ENST00000543140 ERVK-6Q9BXR3 956 aa16.28■□□□□ 0.2
COL4A1-204ENST00000543140 ZBTB26Q9HCK0 441 aa16.28■□□□□ 0.2
COL4A1-204ENST00000543140 CORO1CQ9ULV4 474 aaPredicted RBP16.28■□□□□ 0.2
COL4A1-204ENST00000543140 TYW5A2RUC4 315 aaKnown RBP16.27■□□□□ 0.2
COL4A1-204ENST00000543140 ANPEPP15144 967 aa16.27■□□□□ 0.2
COL4A1-204ENST00000543140 CES1P23141 567 aa16.27■□□□□ 0.2
COL4A1-204ENST00000543140 SUOXP51687 545 aa16.27■□□□□ 0.2
COL4A1-204ENST00000543140 GAREM2Q75VX8 874 aa16.27■□□□□ 0.2
COL4A1-204ENST00000543140 DSELQ8IZU8 1212 aa16.27■□□□□ 0.2
COL4A1-204ENST00000543140 FBXW8Q8N3Y1 598 aa16.27■□□□□ 0.2
COL4A1-204ENST00000543140 SNX31Q8N9S9 440 aa16.27■□□□□ 0.2
COL4A1-204ENST00000543140 KYQ8NBH2 561 aa16.27■□□□□ 0.2
COL4A1-204ENST00000543140 RP9Q8TA86 221 aaKnown RBP16.27■□□□□ 0.2
COL4A1-204ENST00000543140 SLC26A7Q8TE54 656 aa16.27■□□□□ 0.2
COL4A1-204ENST00000543140 TAS2R13Q9NYV9 303 aa16.27■□□□□ 0.2
COL4A1-204ENST00000543140 IKZF3Q9UKT9 509 aa16.27■□□□□ 0.2
COL4A1-204ENST00000543140 POMPQ9Y244 141 aa16.27■□□□□ 0.2
COL4A1-204ENST00000543140 OR51B4Q9Y5P0 310 aa16.27■□□□□ 0.2
COL4A1-204ENST00000543140 NRG2O14511 850 aaPredicted RBP16.27■□□□□ 0.2
COL4A1-204ENST00000543140 SMAD6O43541 496 aaKnown RBP16.27■□□□□ 0.2
COL4A1-204ENST00000543140 ALPIP09923 528 aa16.27■□□□□ 0.2
COL4A1-204ENST00000543140 MTHFD2P13995 350 aa16.27■□□□□ 0.2
COL4A1-204ENST00000543140 TPGS1Q6ZTW0 290 aa16.27■□□□□ 0.2
COL4A1-204ENST00000543140 OTOP2Q7RTS6 562 aa16.27■□□□□ 0.2
COL4A1-204ENST00000543140 MFN1Q8IWA4 741 aa16.27■□□□□ 0.2
COL4A1-204ENST00000543140 L3HYPDHQ96EM0 354 aa16.27■□□□□ 0.2
COL4A1-204ENST00000543140 NSUN5Q96P11 429 aaKnown RBP16.27■□□□□ 0.2
COL4A1-204ENST00000543140 SLC30A3Q99726 388 aa16.27■□□□□ 0.2
COL4A1-204ENST00000543140 CFLARO15519 480 aa16.26■□□□□ 0.19
COL4A1-204ENST00000543140 NIPSNAP2O75323 286 aa16.26■□□□□ 0.19
COL4A1-204ENST00000543140 SNUPNO95149 360 aaKnown RBP16.26■□□□□ 0.19
COL4A1-204ENST00000543140 CNPP09543 421 aaKnown RBP16.26■□□□□ 0.19
COL4A1-204ENST00000543140 GFAPP14136 432 aa16.26■□□□□ 0.19
COL4A1-204ENST00000543140 HOXB8P17481 243 aaPredicted RBP16.26■□□□□ 0.19
COL4A1-204ENST00000543140 GKP32189 559 aa16.26■□□□□ 0.19
COL4A1-204ENST00000543140 AP2B1P63010 937 aa16.26■□□□□ 0.19
COL4A1-204ENST00000543140 SH3BP2P78314 561 aa16.26■□□□□ 0.19
COL4A1-204ENST00000543140 CCNIQ14094 377 aa16.26■□□□□ 0.19
COL4A1-204ENST00000543140 TAS2R42Q7RTR8 314 aa16.26■□□□□ 0.19
COL4A1-204ENST00000543140 CAMK1DQ8IU85 385 aa16.26■□□□□ 0.19
COL4A1-204ENST00000543140 AFAP1L2Q8N4X5 818 aa16.26■□□□□ 0.19
COL4A1-204ENST00000543140 NAT14Q8WUY8 206 aa16.26■□□□□ 0.19
COL4A1-204ENST00000543140 BIRC8Q96P09 236 aa16.26■□□□□ 0.19
COL4A1-204ENST00000543140 CLEC4EQ9ULY5 219 aa16.26■□□□□ 0.19
COL4A1-204ENST00000543140 MYOFQ9NZM1 2061 aa16.26■□□□□ 0.19
COL4A1-204ENST00000543140 SUPT3HB4E1H0 165 aa16.26■□□□□ 0.19
COL4A1-204ENST00000543140 TGM5O43548 720 aa16.26■□□□□ 0.19
COL4A1-204ENST00000543140 SUPT3HO75486 399 aa16.26■□□□□ 0.19
COL4A1-204ENST00000543140 ENO3P13929 434 aaPredicted RBP16.26■□□□□ 0.19
COL4A1-204ENST00000543140 MSX2P35548 267 aaPredicted RBP16.26■□□□□ 0.19
COL4A1-204ENST00000543140 CLNS1AP54105 237 aaKnown RBP16.26■□□□□ 0.19
COL4A1-204ENST00000543140 ZRSR2Q15696 482 aaKnown RBP16.26■□□□□ 0.19
COL4A1-204ENST00000543140 PABPC1LQ4VXU2 614 aaKnown RBP16.26■□□□□ 0.19
COL4A1-204ENST00000543140 Q6ZNB5 142 aa16.26■□□□□ 0.19
COL4A1-204ENST00000543140 ITIH5Q86UX2 942 aa16.26■□□□□ 0.19
COL4A1-204ENST00000543140 PAF1Q8N7H5 531 aa16.26■□□□□ 0.19
COL4A1-204ENST00000543140 ALG14Q96F25 216 aa16.26■□□□□ 0.19
COL4A1-204ENST00000543140 ZNF333Q96JL9 665 aa16.26■□□□□ 0.19
COL4A1-204ENST00000543140 FAR2Q96K12 515 aa16.26■□□□□ 0.19
COL4A1-204ENST00000543140 ATOH8Q96SQ7 321 aa16.26■□□□□ 0.19
COL4A1-204ENST00000543140 NPAS2Q99743 824 aa16.26■□□□□ 0.19
COL4A1-204ENST00000543140 CRISPLD2Q9H0B8 497 aa16.26■□□□□ 0.19
COL4A1-204ENST00000543140 SMG9Q9H0W8 520 aaKnown RBP16.26■□□□□ 0.19
COL4A1-204ENST00000543140 MEAF6Q9HAF1 191 aa16.26■□□□□ 0.19
COL4A1-204ENST00000543140 POPDC3Q9HBV1 291 aa16.26■□□□□ 0.19
COL4A1-204ENST00000543140 CFAP97Q9P2B7 532 aa16.26■□□□□ 0.19
COL4A1-204ENST00000543140 ANGPTL2Q9UKU9 493 aa16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms