RNA–Protein interactions for RNA: ENST00000543123.1

RTN3-212, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-212ENST00000543123 CFAP46Q8IYW2 2715 aa13.09□□□□□ -0.31
RTN3-212ENST00000543123 A0A0J9YYE9 177 aa13.08□□□□□ -0.32
RTN3-212ENST00000543123 K7ENP7 123 aa13.08□□□□□ -0.32
RTN3-212ENST00000543123 NVLO15381 856 aaKnown RBP13.08□□□□□ -0.32
RTN3-212ENST00000543123 CBFA2T2O43439 604 aa13.08□□□□□ -0.32
RTN3-212ENST00000543123 FZD6O60353 706 aa13.08□□□□□ -0.32
RTN3-212ENST00000543123 TRBC1P01850 177 aa13.08□□□□□ -0.32
RTN3-212ENST00000543123 CD48P09326 243 aa13.08□□□□□ -0.32
RTN3-212ENST00000543123 SLC5A2P31639 672 aa13.08□□□□□ -0.32
RTN3-212ENST00000543123 HNRNPH3P31942 346 aaKnown RBP13.08□□□□□ -0.32
RTN3-212ENST00000543123 CASP14P31944 242 aa13.08□□□□□ -0.32
RTN3-212ENST00000543123 GPR3P46089 330 aa13.08□□□□□ -0.32
RTN3-212ENST00000543123 ZFP36L1Q07352 338 aaKnown RBP13.08□□□□□ -0.32
RTN3-212ENST00000543123 CLN3Q13286 438 aa13.08□□□□□ -0.32
RTN3-212ENST00000543123 LRP8Q14114 963 aa13.08□□□□□ -0.32
RTN3-212ENST00000543123 SLC18A3Q16572 532 aa13.08□□□□□ -0.32
RTN3-212ENST00000543123 ANKRD20A8PQ5CZ79 823 aa13.08□□□□□ -0.32
RTN3-212ENST00000543123 PHF19Q5T6S3 580 aa13.08□□□□□ -0.32
RTN3-212ENST00000543123 TMEM164Q5U3C3 297 aa13.08□□□□□ -0.32
RTN3-212ENST00000543123 INO80CQ6PI98 192 aaPredicted RBP13.08□□□□□ -0.32
RTN3-212ENST00000543123 SLC30A9Q6PML9 568 aa13.08□□□□□ -0.32
RTN3-212ENST00000543123 NYAP1Q6ZVC0 841 aa13.08□□□□□ -0.32
RTN3-212ENST00000543123 ZNF438Q7Z4V0 828 aa13.08□□□□□ -0.32
RTN3-212ENST00000543123 TSPAN33Q86UF1 283 aa13.08□□□□□ -0.32
RTN3-212ENST00000543123 NLRP8Q86W28 1048 aa13.08□□□□□ -0.32
RTN3-212ENST00000543123 PELI3Q8N2H9 469 aa13.08□□□□□ -0.32
RTN3-212ENST00000543123 CCL4L1Q8NHW4 92 aa13.08□□□□□ -0.32
RTN3-212ENST00000543123 PIH1D2Q8WWB5 315 aa13.08□□□□□ -0.32
RTN3-212ENST00000543123 OR2M4Q96R27 311 aa13.08□□□□□ -0.32
RTN3-212ENST00000543123 CCNL2Q96S94 520 aaPredicted RBP13.08□□□□□ -0.32
RTN3-212ENST00000543123 RBM22Q9NW64 420 aaKnown RBP eCLIP13.08□□□□□ -0.32
RTN3-212ENST00000543123 SEPT10Q9P0V9 454 aa13.08□□□□□ -0.32
RTN3-212ENST00000543123 PISDQ9UG56 409 aa13.08□□□□□ -0.32
RTN3-212ENST00000543123 HELZ2Q9BYK8 2649 aaKnown RBP13.08□□□□□ -0.32
RTN3-212ENST00000543123 PMS2P1A4D2B8 440 aa13.07□□□□□ -0.32
RTN3-212ENST00000543123 CASC3O15234 703 aaKnown RBP13.07□□□□□ -0.32
RTN3-212ENST00000543123 FGF1P05230 155 aa13.07□□□□□ -0.32
RTN3-212ENST00000543123 LIPCP11150 499 aa13.07□□□□□ -0.32
RTN3-212ENST00000543123 CD82P27701 267 aa13.07□□□□□ -0.32
RTN3-212ENST00000543123 ADCY8P40145 1251 aa13.07□□□□□ -0.32
RTN3-212ENST00000543123 ARSEP51690 589 aa13.07□□□□□ -0.32
RTN3-212ENST00000543123 CFHR1Q03591 330 aa13.07□□□□□ -0.32
RTN3-212ENST00000543123 NR1D2Q14995 579 aa13.07□□□□□ -0.32
RTN3-212ENST00000543123 ZSCAN23Q3MJ62 389 aa13.07□□□□□ -0.32
RTN3-212ENST00000543123 DOK6Q6PKX4 331 aa13.07□□□□□ -0.32
RTN3-212ENST00000543123 TECPR1Q7Z6L1 1165 aa13.07□□□□□ -0.32
RTN3-212ENST00000543123 C17orf82Q86X59 251 aaPredicted RBP13.07□□□□□ -0.32
RTN3-212ENST00000543123 GALNT13Q8IUC8 556 aa13.07□□□□□ -0.32
RTN3-212ENST00000543123 CCNYQ8ND76 341 aa13.07□□□□□ -0.32
RTN3-212ENST00000543123 CCDC112Q8NEF3 446 aa13.07□□□□□ -0.32
RTN3-212ENST00000543123 EXD1Q8NHP7 514 aa13.07□□□□□ -0.32
RTN3-212ENST00000543123 HDAC11Q96DB2 347 aa13.07□□□□□ -0.32
RTN3-212ENST00000543123 DPYSL5Q9BPU6 564 aa13.07□□□□□ -0.32
RTN3-212ENST00000543123 TDRD1Q9BXT4 1180 aaKnown RBP13.07□□□□□ -0.32
RTN3-212ENST00000543123 ADGRE3Q9BY15 652 aa13.07□□□□□ -0.32
RTN3-212ENST00000543123 B3GNT4Q9C0J1 378 aa13.07□□□□□ -0.32
RTN3-212ENST00000543123 ABCG8Q9H221 673 aa13.07□□□□□ -0.32
RTN3-212ENST00000543123 SPATS2LQ9NUQ6 558 aaKnown RBP13.07□□□□□ -0.32
RTN3-212ENST00000543123 WDR70Q9NW82 654 aa13.07□□□□□ -0.32
RTN3-212ENST00000543123 PCDHB11Q9Y5F2 797 aa13.07□□□□□ -0.32
RTN3-212ENST00000543123 KIF26BQ2KJY2 2108 aa13.07□□□□□ -0.32
RTN3-212ENST00000543123 ZNF487B1APH4 448 aa13.06□□□□□ -0.32
RTN3-212ENST00000543123 HGSO14964 777 aaPredicted RBP13.06□□□□□ -0.32
RTN3-212ENST00000543123 ECEL1O95672 775 aa13.06□□□□□ -0.32
RTN3-212ENST00000543123 PRB1P04280 392 aa13.06□□□□□ -0.32
RTN3-212ENST00000543123 PDHA1P08559 390 aa13.06□□□□□ -0.32
RTN3-212ENST00000543123 TMEM253P0C7T8 217 aa13.06□□□□□ -0.32
RTN3-212ENST00000543123 ALDH4A1P30038 563 aa13.06□□□□□ -0.32
RTN3-212ENST00000543123 ACTR1BP42025 376 aa13.06□□□□□ -0.32
RTN3-212ENST00000543123 STC1P52823 247 aa13.06□□□□□ -0.32
RTN3-212ENST00000543123 MAZP56270 477 aaKnown RBP13.06□□□□□ -0.32
RTN3-212ENST00000543123 ACTR1AP61163 376 aa13.06□□□□□ -0.32
RTN3-212ENST00000543123 B4GALNT1Q00973 533 aa13.06□□□□□ -0.32
RTN3-212ENST00000543123 CTBSQ01459 385 aa13.06□□□□□ -0.32
RTN3-212ENST00000543123 DSC2Q02487 901 aa13.06□□□□□ -0.32
RTN3-212ENST00000543123 TRA2AQ13595 282 aaKnown RBP eCLIP13.06□□□□□ -0.323e-6■□□□□ 8.6
RTN3-212ENST00000543123 AMZ1Q400G9 498 aa13.06□□□□□ -0.32
RTN3-212ENST00000543123 ODF2Q5BJF6 829 aa13.06□□□□□ -0.32
RTN3-212ENST00000543123 NRROSQ86YC3 692 aa13.06□□□□□ -0.32
RTN3-212ENST00000543123 SLITRK4Q8IW52 837 aa13.06□□□□□ -0.32
RTN3-212ENST00000543123 CCDC13Q8IYE1 715 aa13.06□□□□□ -0.32
RTN3-212ENST00000543123 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP13.06□□□□□ -0.32
RTN3-212ENST00000543123 OR8K1Q8NGG5 319 aa13.06□□□□□ -0.32
RTN3-212ENST00000543123 CCHCR1Q8TD31 782 aa13.06□□□□□ -0.32
RTN3-212ENST00000543123 TRAF3IP1Q8TDR0 691 aaPredicted RBP13.06□□□□□ -0.32
RTN3-212ENST00000543123 FAF2Q96CS3 445 aa13.06□□□□□ -0.32
RTN3-212ENST00000543123 SCARF2Q96GP6 870 aaPredicted RBP13.06□□□□□ -0.32
RTN3-212ENST00000543123 ZMYND15Q9H091 742 aa13.06□□□□□ -0.32
RTN3-212ENST00000543123 STN1Q9H668 368 aaKnown RBP13.06□□□□□ -0.32
RTN3-212ENST00000543123 PCDH9Q9HC56 1237 aa13.06□□□□□ -0.32
RTN3-212ENST00000543123 VPS18Q9P253 973 aa13.06□□□□□ -0.32
RTN3-212ENST00000543123 CD84Q9UIB8 345 aa13.06□□□□□ -0.32
RTN3-212ENST00000543123 NENFQ9UMX5 172 aa13.06□□□□□ -0.32
RTN3-212ENST00000543123 CHKBQ9Y259 395 aa13.06□□□□□ -0.32
RTN3-212ENST00000543123 UNC13CQ8NB66 2214 aa13.06□□□□□ -0.32
RTN3-212ENST00000543123 C1orf232A0A0U1RR37 186 aa13.05□□□□□ -0.32
RTN3-212ENST00000543123 SSU72P8A0A1W2PR75 194 aa13.05□□□□□ -0.32
RTN3-212ENST00000543123 RGSL1A5PLK6 1076 aa13.05□□□□□ -0.32
RTN3-212ENST00000543123 AKR1B10O60218 316 aa13.05□□□□□ -0.32
RTN3-212ENST00000543123 C1QL1O75973 258 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms