RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 PPARGP37231 505 aaPredicted RBP17.47■□□□□ 0.39
CLSTN3-210ENST00000540931 CHRNA4P43681 627 aa17.47■□□□□ 0.39
CLSTN3-210ENST00000540931 SPARCL1Q14515 664 aa17.47■□□□□ 0.39
CLSTN3-210ENST00000540931 DENND2CQ68D51 928 aa17.47■□□□□ 0.39
CLSTN3-210ENST00000540931 Q6ZVL8 140 aa17.47■□□□□ 0.39
CLSTN3-210ENST00000540931 ARMCX6Q7L4S7 300 aa17.47■□□□□ 0.39
CLSTN3-210ENST00000540931 TSPAN33Q86UF1 283 aa17.47■□□□□ 0.39
CLSTN3-210ENST00000540931 TAB3Q8N5C8 712 aaPredicted RBP17.47■□□□□ 0.39
CLSTN3-210ENST00000540931 DEFB119Q8N690 84 aa17.47■□□□□ 0.39
CLSTN3-210ENST00000540931 TP53I13Q8NBR0 393 aaPredicted RBP17.47■□□□□ 0.39
CLSTN3-210ENST00000540931 KLF6Q99612 283 aaPredicted RBP17.47■□□□□ 0.39
CLSTN3-210ENST00000540931 TTC1Q99614 292 aa17.47■□□□□ 0.39
CLSTN3-210ENST00000540931 APOL2Q9BQE5 337 aa17.47■□□□□ 0.39
CLSTN3-210ENST00000540931 PHACTR1Q9C0D0 580 aa17.47■□□□□ 0.39
CLSTN3-210ENST00000540931 ERVMER34-1Q9H9K5 563 aa17.47■□□□□ 0.39
CLSTN3-210ENST00000540931 PHPT1Q9NRX4 125 aaPredicted RBP17.47■□□□□ 0.39
CLSTN3-210ENST00000540931 ANAPC5Q9UJX4 755 aa17.47■□□□□ 0.39
CLSTN3-210ENST00000540931 NUMA1Q14980 2115 aa17.47■□□□□ 0.39
CLSTN3-210ENST00000540931 GPR89AB7ZAQ6 455 aa17.46■□□□□ 0.39
CLSTN3-210ENST00000540931 GPR89BP0CG08 455 aa17.46■□□□□ 0.39
CLSTN3-210ENST00000540931 SPAM1P38567 509 aa17.46■□□□□ 0.39
CLSTN3-210ENST00000540931 ETV3P41162 512 aa17.46■□□□□ 0.39
CLSTN3-210ENST00000540931 GPR1P46091 355 aa17.46■□□□□ 0.39
CLSTN3-210ENST00000540931 THOP1P52888 689 aa17.46■□□□□ 0.39
CLSTN3-210ENST00000540931 PLA2G2CQ5R387 149 aa17.46■□□□□ 0.39
CLSTN3-210ENST00000540931 PNCKQ6P2M8 343 aa17.46■□□□□ 0.39
CLSTN3-210ENST00000540931 HSD11B1LQ7Z5J1 315 aa17.46■□□□□ 0.39
CLSTN3-210ENST00000540931 PRUNE1Q86TP1 453 aa17.46■□□□□ 0.39
CLSTN3-210ENST00000540931 TTC30BQ8N4P2 665 aa17.46■□□□□ 0.39
CLSTN3-210ENST00000540931 TRAM1L1Q8N609 369 aa17.46■□□□□ 0.39
CLSTN3-210ENST00000540931 HEXDCQ8WVB3 486 aa17.46■□□□□ 0.39
CLSTN3-210ENST00000540931 ORAI3Q9BRQ5 295 aa17.46■□□□□ 0.39
CLSTN3-210ENST00000540931 FAM114A2Q9NRY5 505 aa17.46■□□□□ 0.39
CLSTN3-210ENST00000540931 KMT2BQ9UMN6 2715 aaPredicted RBP17.45■□□□□ 0.38
CLSTN3-210ENST00000540931 MROH6A6NGR9 719 aa17.45■□□□□ 0.38
CLSTN3-210ENST00000540931 H7C0S8 307 aa17.45■□□□□ 0.38
CLSTN3-210ENST00000540931 TLR4O00206 839 aa17.45■□□□□ 0.38
CLSTN3-210ENST00000540931 PFDN6O15212 129 aa17.45■□□□□ 0.38
CLSTN3-210ENST00000540931 TTC4O95801 387 aa17.45■□□□□ 0.38
CLSTN3-210ENST00000540931 C1SP09871 688 aa17.45■□□□□ 0.38
CLSTN3-210ENST00000540931 PSMA3P25788 255 aa17.45■□□□□ 0.38
CLSTN3-210ENST00000540931 IVDP26440 423 aa17.45■□□□□ 0.38
CLSTN3-210ENST00000540931 BLKP51451 505 aa17.45■□□□□ 0.38
CLSTN3-210ENST00000540931 ARL4CP56559 192 aa17.45■□□□□ 0.38
CLSTN3-210ENST00000540931 CBLBQ13191 982 aa17.45■□□□□ 0.38
CLSTN3-210ENST00000540931 MSLNQ13421 630 aaPredicted RBP17.45■□□□□ 0.38
CLSTN3-210ENST00000540931 CSRP2Q16527 193 aa17.45■□□□□ 0.38
CLSTN3-210ENST00000540931 WSCD2Q2TBF2 565 aa17.45■□□□□ 0.38
CLSTN3-210ENST00000540931 GPR33Q49SQ1 333 aa17.45■□□□□ 0.38
CLSTN3-210ENST00000540931 HENMT1Q5T8I9 393 aaKnown RBP17.45■□□□□ 0.38
CLSTN3-210ENST00000540931 DUPD1Q68J44 220 aa17.45■□□□□ 0.38
CLSTN3-210ENST00000540931 RAET1GQ6H3X3 334 aa17.45■□□□□ 0.38
CLSTN3-210ENST00000540931 HIBCHQ6NVY1 386 aaPredicted RBP17.45■□□□□ 0.38
CLSTN3-210ENST00000540931 ADAMTSL4Q6UY14 1074 aa17.45■□□□□ 0.38
CLSTN3-210ENST00000540931 ZCCHC9Q8N567 271 aaKnown RBP17.45■□□□□ 0.38
CLSTN3-210ENST00000540931 TBRG4Q969Z0 631 aaKnown RBP eCLIP17.45■□□□□ 0.38
CLSTN3-210ENST00000540931 ULK4Q96C45 1275 aa17.45■□□□□ 0.38
CLSTN3-210ENST00000540931 SERPINB12Q96P63 405 aa17.45■□□□□ 0.38
CLSTN3-210ENST00000540931 ARRDC1-AS1Q9H2J1 176 aa17.45■□□□□ 0.38
CLSTN3-210ENST00000540931 WDR26Q9H7D7 661 aa17.45■□□□□ 0.38
CLSTN3-210ENST00000540931 GDF3Q9NR23 364 aa17.45■□□□□ 0.38
CLSTN3-210ENST00000540931 NLE1Q9NVX2 485 aaPredicted RBP17.45■□□□□ 0.38
CLSTN3-210ENST00000540931 SPO11Q9Y5K1 396 aa17.45■□□□□ 0.38
CLSTN3-210ENST00000540931 GLYATL1P3A0A0U1RQE8 302 aa17.44■□□□□ 0.38
CLSTN3-210ENST00000540931 F8W8V4 182 aa17.44■□□□□ 0.38
CLSTN3-210ENST00000540931 TNFRSF10CO14798 259 aa17.44■□□□□ 0.38
CLSTN3-210ENST00000540931 EIF3HO15372 352 aaKnown RBP eCLIP17.44■□□□□ 0.38
CLSTN3-210ENST00000540931 LDB2O43679 373 aa17.44■□□□□ 0.38
CLSTN3-210ENST00000540931 CER1O95813 267 aa17.44■□□□□ 0.38
CLSTN3-210ENST00000540931 PIRTP0C851 137 aa17.44■□□□□ 0.38
CLSTN3-210ENST00000540931 THEGLP0DJG4 465 aa17.44■□□□□ 0.38
CLSTN3-210ENST00000540931 MAOBP27338 520 aa17.44■□□□□ 0.38
CLSTN3-210ENST00000540931 ATXN3P54252 364 aaPredicted RBP17.44■□□□□ 0.38
CLSTN3-210ENST00000540931 KIAA1024LP59773 190 aa17.44■□□□□ 0.38
CLSTN3-210ENST00000540931 PFN3P60673 137 aa17.44■□□□□ 0.38
CLSTN3-210ENST00000540931 PEX6Q13608 980 aa17.44■□□□□ 0.38
CLSTN3-210ENST00000540931 SEPT6Q14141 434 aa17.44■□□□□ 0.38
CLSTN3-210ENST00000540931 FGL2Q14314 439 aa17.44■□□□□ 0.38
CLSTN3-210ENST00000540931 POU6F1Q14863 301 aa17.44■□□□□ 0.38
CLSTN3-210ENST00000540931 IRF4Q15306 451 aa17.44■□□□□ 0.38
CLSTN3-210ENST00000540931 TRIM61Q5EBN2 209 aa17.44■□□□□ 0.38
CLSTN3-210ENST00000540931 BTN2A2Q8WVV5 523 aa17.44■□□□□ 0.38
CLSTN3-210ENST00000540931 KLK6Q92876 244 aa17.44■□□□□ 0.38
CLSTN3-210ENST00000540931 SGSM3Q96HU1 749 aa17.44■□□□□ 0.38
CLSTN3-210ENST00000540931 CNTNAP3BQ96NU0 1288 aa17.44■□□□□ 0.38
CLSTN3-210ENST00000540931 VPS35Q96QK1 796 aa17.44■□□□□ 0.38
CLSTN3-210ENST00000540931 TRIM51Q9BSJ1 452 aa17.44■□□□□ 0.38
CLSTN3-210ENST00000540931 CARD6Q9BX69 1037 aa17.44■□□□□ 0.38
CLSTN3-210ENST00000540931 SPATA16Q9BXB7 569 aa17.44■□□□□ 0.38
CLSTN3-210ENST00000540931 CNTNAP3Q9BZ76 1288 aa17.44■□□□□ 0.38
CLSTN3-210ENST00000540931 ZCCHC2Q9C0B9 1178 aaKnown RBP17.44■□□□□ 0.38
CLSTN3-210ENST00000540931 ABCG8Q9H221 673 aa17.44■□□□□ 0.38
CLSTN3-210ENST00000540931 EBF2Q9HAK2 575 aa17.44■□□□□ 0.38
CLSTN3-210ENST00000540931 COQ6Q9Y2Z9 468 aa17.44■□□□□ 0.38
CLSTN3-210ENST00000540931 TCAF1Q9Y4C2 921 aa17.44■□□□□ 0.38
CLSTN3-210ENST00000540931 SLC30A1Q9Y6M5 507 aa17.44■□□□□ 0.38
CLSTN3-210ENST00000540931 A0A1W2PR77 199 aa17.43■□□□□ 0.38
CLSTN3-210ENST00000540931 CFIP05156 583 aa17.43■□□□□ 0.38
CLSTN3-210ENST00000540931 MYCLP1P12525 358 aaPredicted RBP17.43■□□□□ 0.38
CLSTN3-210ENST00000540931 BPIP17213 487 aa17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms