RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 MROH6A6NGR9 719 aa16.88■□□□□ 0.29
USP28-208ENST00000540438 BAIAP3O94812 1187 aa16.88■□□□□ 0.29
USP28-208ENST00000540438 MYL4P12829 197 aa16.88■□□□□ 0.29
USP28-208ENST00000540438 CD1DP15813 335 aa16.88■□□□□ 0.29
USP28-208ENST00000540438 ATP5C1P36542 298 aaKnown RBP16.88■□□□□ 0.29
USP28-208ENST00000540438 CYTH1Q15438 398 aa16.88■□□□□ 0.29
USP28-208ENST00000540438 REP15Q6BDI9 236 aa16.88■□□□□ 0.29
USP28-208ENST00000540438 TPGS1Q6ZTW0 290 aa16.88■□□□□ 0.29
USP28-208ENST00000540438 LPGAT1Q92604 370 aa16.88■□□□□ 0.29
USP28-208ENST00000540438 GBP5Q96PP8 586 aa16.88■□□□□ 0.29
USP28-208ENST00000540438 PRKD2Q9BZL6 878 aa16.88■□□□□ 0.29
USP28-208ENST00000540438 VCXQ9H320 206 aa16.88■□□□□ 0.29
USP28-208ENST00000540438 UBAP1Q9NZ09 502 aa16.88■□□□□ 0.29
USP28-208ENST00000540438 CLCN5P51795 746 aa16.87■□□□□ 0.29
USP28-208ENST00000540438 OXCT1P55809 520 aa16.87■□□□□ 0.29
USP28-208ENST00000540438 MTX3Q5HYI7 312 aa16.87■□□□□ 0.29
USP28-208ENST00000540438 CPNE9Q8IYJ1 553 aa16.87■□□□□ 0.29
USP28-208ENST00000540438 DNAJB14Q8TBM8 379 aa16.87■□□□□ 0.29
USP28-208ENST00000540438 TRIM62Q9BVG3 475 aa16.87■□□□□ 0.29
USP28-208ENST00000540438 TUBB1Q9H4B7 451 aa16.87■□□□□ 0.29
USP28-208ENST00000540438 RNF112Q9ULX5 631 aa16.87■□□□□ 0.29
USP28-208ENST00000540438 PCDHGA7Q9Y5G6 932 aa16.87■□□□□ 0.29
USP28-208ENST00000540438 DOCK4Q8N1I0 1966 aa16.87■□□□□ 0.29
USP28-208ENST00000540438 PTPRDP23468 1912 aa16.87■□□□□ 0.29
USP28-208ENST00000540438 MRASO14807 208 aa16.87■□□□□ 0.29
USP28-208ENST00000540438 PRAMEF11O60813 436 aa16.87■□□□□ 0.29
USP28-208ENST00000540438 CLASP2O75122 1294 aaKnown RBP16.87■□□□□ 0.29
USP28-208ENST00000540438 NDUFS3O75489 264 aa16.87■□□□□ 0.29
USP28-208ENST00000540438 TIPRLO75663 272 aa16.87■□□□□ 0.29
USP28-208ENST00000540438 NCK1P16333 377 aa16.87■□□□□ 0.29
USP28-208ENST00000540438 INHBEP58166 350 aa16.87■□□□□ 0.29
USP28-208ENST00000540438 DBN1Q16643 649 aa16.87■□□□□ 0.29
USP28-208ENST00000540438 SMYD5Q6GMV2 418 aa16.87■□□□□ 0.29
USP28-208ENST00000540438 C16orf89Q6UX73 402 aa16.87■□□□□ 0.29
USP28-208ENST00000540438 SATL1Q86VE3 508 aa16.87■□□□□ 0.29
USP28-208ENST00000540438 EEF1AKMT1Q8WVE0 214 aa16.87■□□□□ 0.29
USP28-208ENST00000540438 TSC22D3Q99576 134 aa16.87■□□□□ 0.29
USP28-208ENST00000540438 CIB1Q99828 191 aa16.87■□□□□ 0.29
USP28-208ENST00000540438 TTPALQ9BTX7 342 aa16.87■□□□□ 0.29
USP28-208ENST00000540438 MAGEA13PA6NCF6 341 aa16.86■□□□□ 0.29
USP28-208ENST00000540438 EOMESO95936 686 aa16.86■□□□□ 0.29
USP28-208ENST00000540438 RHOCP08134 193 aa16.86■□□□□ 0.29
USP28-208ENST00000540438 MTHFD2P13995 350 aa16.86■□□□□ 0.29
USP28-208ENST00000540438 HGFP14210 728 aa16.86■□□□□ 0.29
USP28-208ENST00000540438 SLC44A4Q53GD3 710 aa16.86■□□□□ 0.29
USP28-208ENST00000540438 TXNDC8Q6A555 127 aa16.86■□□□□ 0.29
USP28-208ENST00000540438 FUNDC1Q8IVP5 155 aa16.86■□□□□ 0.29
USP28-208ENST00000540438 RDH11Q8TC12 318 aa16.86■□□□□ 0.29
USP28-208ENST00000540438 CALML6Q8TD86 181 aa16.86■□□□□ 0.29
USP28-208ENST00000540438 C19orf60Q96EN9 201 aa16.86■□□□□ 0.29
USP28-208ENST00000540438 CCDC68Q9H2F9 335 aa16.86■□□□□ 0.29
USP28-208ENST00000540438 UBA2Q9UBT2 640 aaPredicted RBP16.86■□□□□ 0.29
USP28-208ENST00000540438 CEP290O15078 2479 aa16.86■□□□□ 0.29
USP28-208ENST00000540438 MYOFQ9NZM1 2061 aa16.86■□□□□ 0.29
USP28-208ENST00000540438 LOC101059915A0A1B0GWI6 518 aaPredicted RBP16.86■□□□□ 0.29
USP28-208ENST00000540438 ACSL4O60488 711 aa16.86■□□□□ 0.29
USP28-208ENST00000540438 ZNF37AP17032 561 aaPredicted RBP16.86■□□□□ 0.29
USP28-208ENST00000540438 IL10RBQ08334 325 aa16.86■□□□□ 0.29
USP28-208ENST00000540438 PDK3Q15120 406 aa16.86■□□□□ 0.29
USP28-208ENST00000540438 RPS6KA2Q15349 733 aa16.86■□□□□ 0.29
USP28-208ENST00000540438 METTL21CQ5VZV1 264 aa16.86■□□□□ 0.29
USP28-208ENST00000540438 CAMK1DQ8IU85 385 aa16.86■□□□□ 0.29
USP28-208ENST00000540438 MFSD1Q9H3U5 465 aa16.86■□□□□ 0.29
USP28-208ENST00000540438 SCUBE2Q9NQ36 999 aa16.86■□□□□ 0.29
USP28-208ENST00000540438 CACNA2D2Q9NY47 1150 aa16.86■□□□□ 0.29
USP28-208ENST00000540438 LOC285095A0A1B0GVY8 99 aa16.86■□□□□ 0.29
USP28-208ENST00000540438 C1RP00736 705 aa16.86■□□□□ 0.29
USP28-208ENST00000540438 UGT1A1P22309 533 aa16.86■□□□□ 0.29
USP28-208ENST00000540438 UGT1A4P22310 534 aa16.86■□□□□ 0.29
USP28-208ENST00000540438 MC4RP32245 332 aa16.86■□□□□ 0.29
USP28-208ENST00000540438 UGT1A3P35503 534 aa16.86■□□□□ 0.29
USP28-208ENST00000540438 UGT1A5P35504 534 aa16.86■□□□□ 0.29
USP28-208ENST00000540438 GDF5P43026 501 aa16.86■□□□□ 0.29
USP28-208ENST00000540438 GPR17Q13304 367 aa16.86■□□□□ 0.29
USP28-208ENST00000540438 ACAP2Q15057 778 aa16.86■□□□□ 0.29
USP28-208ENST00000540438 SGO1Q5FBB7 561 aa16.86■□□□□ 0.29
USP28-208ENST00000540438 CDYL2Q8N8U2 506 aa16.86■□□□□ 0.29
USP28-208ENST00000540438 TNKS2Q9H2K2 1166 aa16.86■□□□□ 0.29
USP28-208ENST00000540438 NOL11Q9H8H0 719 aaKnown RBP16.86■□□□□ 0.29
USP28-208ENST00000540438 RAI2Q9Y5P3 530 aa16.86■□□□□ 0.29
USP28-208ENST00000540438 PDLIM1O00151 329 aa16.85■□□□□ 0.29
USP28-208ENST00000540438 SLC7A4O43246 635 aa16.85■□□□□ 0.29
USP28-208ENST00000540438 PRLP01236 227 aa16.85■□□□□ 0.29
USP28-208ENST00000540438 MTHFD1P11586 935 aaKnown RBP16.85■□□□□ 0.29
USP28-208ENST00000540438 COL6A2P12110 1019 aa16.85■□□□□ 0.29
USP28-208ENST00000540438 GRIA3P42263 894 aa16.85■□□□□ 0.29
USP28-208ENST00000540438 ZNF135P52742 658 aaPredicted RBP16.85■□□□□ 0.29
USP28-208ENST00000540438 ZXDBP98169 803 aa16.85■□□□□ 0.29
USP28-208ENST00000540438 LHX8Q68G74 356 aa16.85■□□□□ 0.29
USP28-208ENST00000540438 FAM151BQ6UXP7 276 aa16.85■□□□□ 0.29
USP28-208ENST00000540438 MYO1HQ8N1T3 1032 aa16.85■□□□□ 0.29
USP28-208ENST00000540438 TWIST2Q8WVJ9 160 aa16.85■□□□□ 0.29
USP28-208ENST00000540438 NMD3Q96D46 503 aaKnown RBP16.85■□□□□ 0.29
USP28-208ENST00000540438 FUBP3Q96I24 572 aaKnown RBP eCLIP16.85■□□□□ 0.29
USP28-208ENST00000540438 CNDP1Q96KN2 507 aa16.85■□□□□ 0.29
USP28-208ENST00000540438 TMEM74Q96NL1 305 aa16.85■□□□□ 0.29
USP28-208ENST00000540438 BOCQ9BWV1 1114 aa16.85■□□□□ 0.29
USP28-208ENST00000540438 ZNF385DQ9H6B1 395 aa16.85■□□□□ 0.29
USP28-208ENST00000540438 TMEM161AQ9NX61 479 aa16.85■□□□□ 0.29
USP28-208ENST00000540438 SRRDQ9UH36 339 aa16.85■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 71.1 ms