RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 PDHA1P08559 390 aa11.31□□□□□ -0.6
VPS28-214ENST00000531032 GOLGA6DP0CG33 693 aa11.31□□□□□ -0.6
VPS28-214ENST00000531032 CCL4P13236 92 aa11.31□□□□□ -0.6
VPS28-214ENST00000531032 ZNF30P17039 623 aa11.31□□□□□ -0.6
VPS28-214ENST00000531032 IL4RP24394 825 aa11.31□□□□□ -0.6
VPS28-214ENST00000531032 ALDH4A1P30038 563 aa11.31□□□□□ -0.6
VPS28-214ENST00000531032 ADCY8P40145 1251 aa11.31□□□□□ -0.6
VPS28-214ENST00000531032 POLD2P49005 469 aa11.31□□□□□ -0.6
VPS28-214ENST00000531032 SQSTM1Q13501 440 aa11.31□□□□□ -0.6
VPS28-214ENST00000531032 MANEAQ5SRI9 462 aa11.31□□□□□ -0.6
VPS28-214ENST00000531032 TMEM164Q5U3C3 297 aa11.31□□□□□ -0.6
VPS28-214ENST00000531032 LRRC66Q68CR7 880 aa11.31□□□□□ -0.6
VPS28-214ENST00000531032 ALG1LQ6GMV1 187 aa11.31□□□□□ -0.6
VPS28-214ENST00000531032 ADAMTSL4Q6UY14 1074 aa11.31□□□□□ -0.6
VPS28-214ENST00000531032 VASH2Q86V25 355 aa11.31□□□□□ -0.6
VPS28-214ENST00000531032 RCBTB1Q8NDN9 531 aa11.31□□□□□ -0.6
VPS28-214ENST00000531032 FAM71BQ8TC56 605 aa11.31□□□□□ -0.6
VPS28-214ENST00000531032 PATE1Q8WXA2 126 aa11.31□□□□□ -0.6
VPS28-214ENST00000531032 OR2M4Q96R27 311 aa11.31□□□□□ -0.6
VPS28-214ENST00000531032 THAP2Q9H0W7 228 aa11.31□□□□□ -0.6
VPS28-214ENST00000531032 CDH19Q9H159 772 aa11.31□□□□□ -0.6
VPS28-214ENST00000531032 NT5MQ9NPB1 228 aa11.31□□□□□ -0.6
VPS28-214ENST00000531032 GOLGA6AQ9NYA3 693 aa11.31□□□□□ -0.6
VPS28-214ENST00000531032 IP6K2Q9UHH9 426 aa11.31□□□□□ -0.6
VPS28-214ENST00000531032 PCDHB11Q9Y5F2 797 aa11.31□□□□□ -0.6
VPS28-214ENST00000531032 SDK2Q58EX2 2172 aa11.31□□□□□ -0.6
VPS28-214ENST00000531032 ZFC3H1O60293 1989 aaKnown RBP11.3□□□□□ -0.6
VPS28-214ENST00000531032 A0A0J9YYE9 177 aa11.3□□□□□ -0.6
VPS28-214ENST00000531032 A0A0U1RQS6 177 aa11.3□□□□□ -0.6
VPS28-214ENST00000531032 STMND1H3BQB6 276 aa11.3□□□□□ -0.6
VPS28-214ENST00000531032 PPM1DO15297 605 aa11.3□□□□□ -0.6
VPS28-214ENST00000531032 SLC28A2O43868 658 aa11.3□□□□□ -0.6
VPS28-214ENST00000531032 MFSD11O43934 449 aa11.3□□□□□ -0.6
VPS28-214ENST00000531032 SERPINC1P01008 464 aa11.3□□□□□ -0.6
VPS28-214ENST00000531032 TRBC1P01850 177 aa11.3□□□□□ -0.6
VPS28-214ENST00000531032 KRT10P13645 584 aa11.3□□□□□ -0.6
VPS28-214ENST00000531032 CTPS1P17812 591 aa11.3□□□□□ -0.6
VPS28-214ENST00000531032 WT1P19544 449 aaPredicted RBP11.3□□□□□ -0.6
VPS28-214ENST00000531032 CSF2RBP32927 897 aa11.3□□□□□ -0.6
VPS28-214ENST00000531032 GARSP41250 739 aaKnown RBP11.3□□□□□ -0.6
VPS28-214ENST00000531032 ACTR1BP42025 376 aa11.3□□□□□ -0.6
VPS28-214ENST00000531032 GPR1P46091 355 aa11.3□□□□□ -0.6
VPS28-214ENST00000531032 ARSDP51689 593 aa11.3□□□□□ -0.6
VPS28-214ENST00000531032 LIMK2P53671 638 aa11.3□□□□□ -0.6
VPS28-214ENST00000531032 ACTR1AP61163 376 aa11.3□□□□□ -0.6
VPS28-214ENST00000531032 PTSQ03393 145 aa11.3□□□□□ -0.6
VPS28-214ENST00000531032 GALNT2Q10471 571 aa11.3□□□□□ -0.6
VPS28-214ENST00000531032 TRA2AQ13595 282 aaKnown RBP eCLIP11.3□□□□□ -0.6
VPS28-214ENST00000531032 IHHQ14623 411 aa11.3□□□□□ -0.6
VPS28-214ENST00000531032 NR1I3Q14994 352 aa11.3□□□□□ -0.6
VPS28-214ENST00000531032 PYCR3Q53H96 274 aa11.3□□□□□ -0.6
VPS28-214ENST00000531032 TDRD12Q587J7 1177 aaKnown RBP11.3□□□□□ -0.6
VPS28-214ENST00000531032 RFLNAQ6ZTI6 216 aa11.3□□□□□ -0.6
VPS28-214ENST00000531032 ZNF765Q7L2R6 523 aa11.3□□□□□ -0.6
VPS28-214ENST00000531032 NLRP8Q86W28 1048 aa11.3□□□□□ -0.6
VPS28-214ENST00000531032 NDUFAF2Q8N183 169 aa11.3□□□□□ -0.6
VPS28-214ENST00000531032 OR4D9Q8NGE8 314 aa11.3□□□□□ -0.6
VPS28-214ENST00000531032 MAML1Q92585 1016 aa11.3□□□□□ -0.6
VPS28-214ENST00000531032 SYN2Q92777 582 aaPredicted RBP11.3□□□□□ -0.6
VPS28-214ENST00000531032 EXTL1Q92935 676 aa11.3□□□□□ -0.6
VPS28-214ENST00000531032 FATE1Q969F0 183 aa11.3□□□□□ -0.6
VPS28-214ENST00000531032 AP2M1Q96CW1 435 aa11.3□□□□□ -0.6
VPS28-214ENST00000531032 BTBD6Q96KE9 485 aa11.3□□□□□ -0.6
VPS28-214ENST00000531032 CCDC74BQ96LY2 380 aa11.3□□□□□ -0.6
VPS28-214ENST00000531032 SEMA3CQ99985 751 aa11.3□□□□□ -0.6
VPS28-214ENST00000531032 NUP85Q9BW27 656 aa11.3□□□□□ -0.6
VPS28-214ENST00000531032 POLR1EQ9GZS1 481 aaKnown RBP11.3□□□□□ -0.6
VPS28-214ENST00000531032 ABCG8Q9H221 673 aa11.3□□□□□ -0.6
VPS28-214ENST00000531032 STARD5Q9NSY2 213 aa11.3□□□□□ -0.6
VPS28-214ENST00000531032 CD84Q9UIB8 345 aa11.3□□□□□ -0.6
VPS28-214ENST00000531032 ANAPC7Q9UJX3 599 aa11.3□□□□□ -0.6
VPS28-214ENST00000531032 PCDHGA3Q9Y5H0 932 aa11.3□□□□□ -0.6
VPS28-214ENST00000531032 BZW2Q9Y6E2 419 aaKnown RBP11.3□□□□□ -0.6
VPS28-214ENST00000531032 IGHV1OR21-1A0A087WYE8 117 aa11.29□□□□□ -0.6
VPS28-214ENST00000531032 A0A1W2PQJ5 194 aa11.29□□□□□ -0.6
VPS28-214ENST00000531032 SYCE3A1L190 88 aa11.29□□□□□ -0.6
VPS28-214ENST00000531032 CYP1A2P05177 515 aa11.29□□□□□ -0.6
VPS28-214ENST00000531032 PYGLP06737 847 aa11.29□□□□□ -0.6
VPS28-214ENST00000531032 CD48P09326 243 aa11.29□□□□□ -0.6
VPS28-214ENST00000531032 THRAP10827 490 aa11.29□□□□□ -0.6
VPS28-214ENST00000531032 FGF3P11487 239 aaPredicted RBP11.29□□□□□ -0.6
VPS28-214ENST00000531032 FASLGP48023 281 aa11.29□□□□□ -0.6
VPS28-214ENST00000531032 ARSEP51690 589 aa11.29□□□□□ -0.6
VPS28-214ENST00000531032 STC1P52823 247 aa11.29□□□□□ -0.6
VPS28-214ENST00000531032 GPLD1P80108 840 aa11.29□□□□□ -0.6
VPS28-214ENST00000531032 NFATC3Q12968 1075 aa11.29□□□□□ -0.6
VPS28-214ENST00000531032 MMRN1Q13201 1228 aa11.29□□□□□ -0.6
VPS28-214ENST00000531032 BIRC2Q13490 618 aa11.29□□□□□ -0.6
VPS28-214ENST00000531032 LRP8Q14114 963 aa11.29□□□□□ -0.6
VPS28-214ENST00000531032 KRT81Q14533 505 aa11.29□□□□□ -0.6
VPS28-214ENST00000531032 IQCB1Q15051 598 aa11.29□□□□□ -0.6
VPS28-214ENST00000531032 PAFAH1B3Q15102 231 aaKnown RBP11.29□□□□□ -0.6
VPS28-214ENST00000531032 NKAIN2Q5VXU1 208 aa11.29□□□□□ -0.6
VPS28-214ENST00000531032 NCBP2-AS2Q69YL0 99 aa11.29□□□□□ -0.6
VPS28-214ENST00000531032 TIGD7Q6NT04 549 aaPredicted RBP11.29□□□□□ -0.6
VPS28-214ENST00000531032 DOK6Q6PKX4 331 aa11.29□□□□□ -0.6
VPS28-214ENST00000531032 RAVER1Q8IY67 606 aaKnown RBP11.29□□□□□ -0.6
VPS28-214ENST00000531032 NRSN1Q8IZ57 195 aa11.29□□□□□ -0.6
VPS28-214ENST00000531032 ZSCAN1Q8NBB4 408 aa11.29□□□□□ -0.6
VPS28-214ENST00000531032 SCAMP4Q969E2 229 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms