RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 PERM1Q5SV97 790 aa24.6■■□□□ 1.53
UPF3A-209ENST00000492270 LYSMD3Q7Z3D4 306 aa24.6■■□□□ 1.53
UPF3A-209ENST00000492270 TRIM74Q86UV6 250 aa24.6■■□□□ 1.53
UPF3A-209ENST00000492270 GKN2Q86XP6 184 aa24.6■■□□□ 1.53
UPF3A-209ENST00000492270 KYQ8NBH2 561 aa24.6■■□□□ 1.53
UPF3A-209ENST00000492270 CCL4L1Q8NHW4 92 aa24.6■■□□□ 1.53
UPF3A-209ENST00000492270 ADGRE3Q9BY15 652 aa24.6■■□□□ 1.53
UPF3A-209ENST00000492270 FRMD8Q9BZ67 464 aaPredicted RBP24.6■■□□□ 1.53
UPF3A-209ENST00000492270 EVA1BQ9NVM1 165 aa24.6■■□□□ 1.53
UPF3A-209ENST00000492270 PACSIN2Q9UNF0 486 aaPredicted RBP24.6■■□□□ 1.53
UPF3A-209ENST00000492270 EME2A4GXA9 379 aaPredicted RBP24.59■■□□□ 1.53
UPF3A-209ENST00000492270 APOC4-APOC2K7ER74 178 aa24.59■■□□□ 1.53
UPF3A-209ENST00000492270 TAF4O00268 1085 aa24.59■■□□□ 1.53
UPF3A-209ENST00000492270 CASC3O15234 703 aaKnown RBP24.59■■□□□ 1.53
UPF3A-209ENST00000492270 PMPCBO75439 489 aa24.59■■□□□ 1.53
UPF3A-209ENST00000492270 APOC2P02655 101 aa24.59■■□□□ 1.53
UPF3A-209ENST00000492270 GP1BAP07359 652 aa24.59■■□□□ 1.53
UPF3A-209ENST00000492270 POLD2P49005 469 aa24.59■■□□□ 1.53
UPF3A-209ENST00000492270 RWDD2BP57060 319 aa24.59■■□□□ 1.53
UPF3A-209ENST00000492270 COPS2P61201 443 aa24.59■■□□□ 1.53
UPF3A-209ENST00000492270 KIF5AQ12840 1032 aa24.59■■□□□ 1.53
UPF3A-209ENST00000492270 NOMO1Q15155 1222 aa24.59■■□□□ 1.53
UPF3A-209ENST00000492270 DOK6Q6PKX4 331 aa24.59■■□□□ 1.53
UPF3A-209ENST00000492270 ZNF765Q7L2R6 523 aa24.59■■□□□ 1.53
UPF3A-209ENST00000492270 SFTPA2Q8IWL1 248 aa24.59■■□□□ 1.53
UPF3A-209ENST00000492270 ZNF567Q8N184 647 aa24.59■■□□□ 1.53
UPF3A-209ENST00000492270 WDR24Q96S15 920 aa24.59■■□□□ 1.53
UPF3A-209ENST00000492270 RIOK2Q9BVS4 552 aaKnown RBP24.59■■□□□ 1.53
UPF3A-209ENST00000492270 OSBPL8Q9BZF1 889 aa24.59■■□□□ 1.53
UPF3A-209ENST00000492270 CARS2Q9HA77 564 aaKnown RBP24.59■■□□□ 1.53
UPF3A-209ENST00000492270 NCKIPSDQ9NZQ3 722 aa24.59■■□□□ 1.53
UPF3A-209ENST00000492270 KLHL8Q9P2G9 620 aaPredicted RBP24.59■■□□□ 1.53
UPF3A-209ENST00000492270 GULP1Q9UBP9 304 aa24.59■■□□□ 1.53
UPF3A-209ENST00000492270 GPR34Q9UPC5 381 aa24.59■■□□□ 1.53
UPF3A-209ENST00000492270 CLCA2Q9UQC9 943 aa24.59■■□□□ 1.53
UPF3A-209ENST00000492270 PDE2AO00408 941 aaPredicted RBP24.58■■□□□ 1.53
UPF3A-209ENST00000492270 PYGMP11217 842 aa24.58■■□□□ 1.53
UPF3A-209ENST00000492270 CDK18Q07002 472 aa24.58■■□□□ 1.53
UPF3A-209ENST00000492270 SLC14A2Q15849 920 aa24.58■■□□□ 1.53
UPF3A-209ENST00000492270 CCDC181Q5TID7 509 aa24.58■■□□□ 1.53
UPF3A-209ENST00000492270 ACTL9Q8TC94 416 aa24.58■■□□□ 1.53
UPF3A-209ENST00000492270 MAPK15Q8TD08 544 aa24.58■■□□□ 1.53
UPF3A-209ENST00000492270 HTR3CQ8WXA8 447 aa24.58■■□□□ 1.53
UPF3A-209ENST00000492270 GLMNQ92990 594 aa24.58■■□□□ 1.53
UPF3A-209ENST00000492270 EID2BQ96D98 161 aa24.58■■□□□ 1.53
UPF3A-209ENST00000492270 FAM118BQ9BPY3 351 aa24.58■■□□□ 1.53
UPF3A-209ENST00000492270 CCDC86Q9H6F5 360 aaKnown RBP24.58■■□□□ 1.53
UPF3A-209ENST00000492270 PADI4Q9UM07 663 aa24.58■■□□□ 1.53
UPF3A-209ENST00000492270 KRT37O76014 449 aa24.57■■□□□ 1.52
UPF3A-209ENST00000492270 FTCDO95954 541 aa24.57■■□□□ 1.52
UPF3A-209ENST00000492270 MT-CO3P00414 261 aa24.57■■□□□ 1.52
UPF3A-209ENST00000492270 SLC4A1P02730 911 aa24.57■■□□□ 1.52
UPF3A-209ENST00000492270 RBL1P28749 1068 aa24.57■■□□□ 1.52
UPF3A-209ENST00000492270 PTPN7P35236 360 aa24.57■■□□□ 1.52
UPF3A-209ENST00000492270 OTUD4Q01804 1114 aaKnown RBP24.57■■□□□ 1.52
UPF3A-209ENST00000492270 CDCP2Q5VXM1 449 aa24.57■■□□□ 1.52
UPF3A-209ENST00000492270 LVRNQ6Q4G3 990 aa24.57■■□□□ 1.52
UPF3A-209ENST00000492270 ADAMTSL4Q6UY14 1074 aa24.57■■□□□ 1.52
UPF3A-209ENST00000492270 TAF8Q7Z7C8 310 aa24.57■■□□□ 1.52
UPF3A-209ENST00000492270 NRSN1Q8IZ57 195 aa24.57■■□□□ 1.52
UPF3A-209ENST00000492270 SDR16C5Q8N3Y7 309 aa24.57■■□□□ 1.52
UPF3A-209ENST00000492270 PDCD7Q8N8D1 485 aaKnown RBP24.57■■□□□ 1.52
UPF3A-209ENST00000492270 ARL10Q8N8L6 244 aa24.57■■□□□ 1.52
UPF3A-209ENST00000492270 DCBLD1Q8N8Z6 715 aa24.57■■□□□ 1.52
UPF3A-209ENST00000492270 SCG3Q8WXD2 468 aaKnown RBP24.57■■□□□ 1.52
UPF3A-209ENST00000492270 AMFRQ9UKV5 643 aa24.57■■□□□ 1.52
UPF3A-209ENST00000492270 SUFUQ9UMX1 484 aa24.57■■□□□ 1.52
UPF3A-209ENST00000492270 SHOC2Q9UQ13 582 aa24.57■■□□□ 1.52
UPF3A-209ENST00000492270 TMEM98Q9Y2Y6 226 aa24.57■■□□□ 1.52
UPF3A-209ENST00000492270 CAPN6Q9Y6Q1 641 aa24.57■■□□□ 1.52
UPF3A-209ENST00000492270 GOLGA6L6A8MZA4 724 aa24.56■■□□□ 1.52
UPF3A-209ENST00000492270 HACD1B0YJ81 288 aa24.56■■□□□ 1.52
UPF3A-209ENST00000492270 H7C0C1 242 aa24.56■■□□□ 1.52
UPF3A-209ENST00000492270 INPP4BO15327 924 aa24.56■■□□□ 1.52
UPF3A-209ENST00000492270 MTSS1O43312 755 aa24.56■■□□□ 1.52
UPF3A-209ENST00000492270 GNPDA1P46926 289 aa24.56■■□□□ 1.52
UPF3A-209ENST00000492270 ATP5OP48047 213 aa24.56■■□□□ 1.52
UPF3A-209ENST00000492270 SPINT3P49223 89 aa24.56■■□□□ 1.52
UPF3A-209ENST00000492270 RPIAP49247 311 aa24.56■■□□□ 1.52
UPF3A-209ENST00000492270 CYP4F3Q08477 520 aa24.56■■□□□ 1.52
UPF3A-209ENST00000492270 KDELC1Q6UW63 502 aa24.56■■□□□ 1.52
UPF3A-209ENST00000492270 PID1Q7Z2X4 250 aa24.56■■□□□ 1.52
UPF3A-209ENST00000492270 PEX26Q7Z412 305 aa24.56■■□□□ 1.52
UPF3A-209ENST00000492270 NLRP8Q86W28 1048 aa24.56■■□□□ 1.52
UPF3A-209ENST00000492270 PROSER1Q86XN7 944 aa24.56■■□□□ 1.52
UPF3A-209ENST00000492270 OXNAD1Q96HP4 312 aaPredicted RBP24.56■■□□□ 1.52
UPF3A-209ENST00000492270 PKD2L2Q9NZM6 624 aa24.56■■□□□ 1.52
UPF3A-209ENST00000492270 SLC17A4Q9Y2C5 497 aa24.56■■□□□ 1.52
UPF3A-209ENST00000492270 EFR3BQ9Y2G0 817 aa24.56■■□□□ 1.52
UPF3A-209ENST00000492270 ZNF711Q9Y462 761 aa24.56■■□□□ 1.52
UPF3A-209ENST00000492270 KIF26BQ2KJY2 2108 aa24.56■■□□□ 1.52
UPF3A-209ENST00000492270 SRRM3A6NNA2 597 aaPredicted RBP24.55■■□□□ 1.52
UPF3A-209ENST00000492270 NDST3O95803 873 aa24.55■■□□□ 1.52
UPF3A-209ENST00000492270 XRCC4Q13426 336 aa24.55■■□□□ 1.52
UPF3A-209ENST00000492270 HENMT1Q5T8I9 393 aaKnown RBP24.55■■□□□ 1.52
UPF3A-209ENST00000492270 NRROSQ86YC3 692 aa24.55■■□□□ 1.52
UPF3A-209ENST00000492270 TXLNBQ8N3L3 684 aa24.55■■□□□ 1.52
UPF3A-209ENST00000492270 FAM46DQ8NEK8 389 aa24.55■■□□□ 1.52
UPF3A-209ENST00000492270 CCHCR1Q8TD31 782 aa24.55■■□□□ 1.52
UPF3A-209ENST00000492270 ABCG4Q9H172 646 aa24.55■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms