RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 HTRA1Q92743 480 aa3.14□□□□□ -1.91
VPS50-216ENST00000484954 KLHL29Q96CT2 875 aa3.14□□□□□ -1.91
VPS50-216ENST00000484954 HVCN1Q96D96 273 aa3.14□□□□□ -1.91
VPS50-216ENST00000484954 CDCA5Q96FF9 252 aa3.14□□□□□ -1.91
VPS50-216ENST00000484954 ZNF583Q96ND8 569 aa3.14□□□□□ -1.91
VPS50-216ENST00000484954 MTERF1Q99551 399 aaKnown RBP3.14□□□□□ -1.91
VPS50-216ENST00000484954 SLC25A18Q9H1K4 315 aa3.14□□□□□ -1.91
VPS50-216ENST00000484954 ZNF696Q9H7X3 374 aa3.14□□□□□ -1.91
VPS50-216ENST00000484954 LUZP4Q9P127 313 aa3.14□□□□□ -1.91
VPS50-216ENST00000484954 POU2F3Q9UKI9 436 aa3.14□□□□□ -1.91
VPS50-216ENST00000484954 TTC7AQ9ULT0 858 aaPredicted RBP3.14□□□□□ -1.91
VPS50-216ENST00000484954 LOXL2Q9Y4K0 774 aa3.14□□□□□ -1.91
VPS50-216ENST00000484954 CEPT1Q9Y6K0 416 aa3.14□□□□□ -1.91
VPS50-216ENST00000484954 LILRA5A6NI73 299 aa3.13□□□□□ -1.91
VPS50-216ENST00000484954 RRN3P2A6NIE6 340 aa3.13□□□□□ -1.91
VPS50-216ENST00000484954 VCYO14598 125 aa3.13□□□□□ -1.91
VPS50-216ENST00000484954 TNFSF14O43557 240 aa3.13□□□□□ -1.91
VPS50-216ENST00000484954 APOHP02749 345 aaPredicted RBP3.13□□□□□ -1.91
VPS50-216ENST00000484954 HSD3B1P14060 373 aa3.13□□□□□ -1.91
VPS50-216ENST00000484954 ANOS1P23352 680 aa3.13□□□□□ -1.91
VPS50-216ENST00000484954 GNL1P36915 607 aaPredicted RBP3.13□□□□□ -1.91
VPS50-216ENST00000484954 IL15P40933 162 aaPredicted RBP3.13□□□□□ -1.91
VPS50-216ENST00000484954 TUBP50607 506 aa3.13□□□□□ -1.91
VPS50-216ENST00000484954 PDE1BQ01064 536 aa3.13□□□□□ -1.91
VPS50-216ENST00000484954 GPR68Q15743 365 aa3.13□□□□□ -1.91
VPS50-216ENST00000484954 C14orf177Q52M58 125 aa3.13□□□□□ -1.91
VPS50-216ENST00000484954 GGNBP1Q5YKI7 109 aa3.13□□□□□ -1.91
VPS50-216ENST00000484954 METTL2BQ6P1Q9 378 aaKnown RBP3.13□□□□□ -1.91
VPS50-216ENST00000484954 KCTD8Q6ZWB6 473 aa3.13□□□□□ -1.91
VPS50-216ENST00000484954 SLC46A3Q7Z3Q1 461 aa3.13□□□□□ -1.91
VPS50-216ENST00000484954 NFE4Q86UQ8 179 aa3.13□□□□□ -1.91
VPS50-216ENST00000484954 CCDC13Q8IYE1 715 aa3.13□□□□□ -1.91
VPS50-216ENST00000484954 RNF113BQ8IZP6 322 aaKnown RBP3.13□□□□□ -1.91
VPS50-216ENST00000484954 BEST3Q8N1M1 668 aa3.13□□□□□ -1.91
VPS50-216ENST00000484954 CADM4Q8NFZ8 388 aa3.13□□□□□ -1.91
VPS50-216ENST00000484954 ORAI1Q96D31 301 aa3.13□□□□□ -1.91
VPS50-216ENST00000484954 METTL2AQ96IZ6 378 aaKnown RBP3.13□□□□□ -1.91
VPS50-216ENST00000484954 SYT17Q9BSW7 474 aa3.13□□□□□ -1.91
VPS50-216ENST00000484954 H2AFJQ9BTM1 129 aa3.13□□□□□ -1.91
VPS50-216ENST00000484954 C1QTNF5Q9BXJ0 243 aa3.13□□□□□ -1.91
VPS50-216ENST00000484954 PCDHB16Q9NRJ7 776 aa3.13□□□□□ -1.91
VPS50-216ENST00000484954 SLC6A13Q9NSD5 602 aa3.13□□□□□ -1.91
VPS50-216ENST00000484954 SARDHQ9UL12 918 aa3.13□□□□□ -1.91
VPS50-216ENST00000484954 TBX20Q9UMR3 447 aa3.13□□□□□ -1.91
VPS50-216ENST00000484954 ERVK-11Q9UQG0 969 aa3.13□□□□□ -1.91
VPS50-216ENST00000484954 GOLGA6L9A6NEM1 432 aa3.12□□□□□ -1.91
VPS50-216ENST00000484954 NCAM2O15394 837 aa3.12□□□□□ -1.91
VPS50-216ENST00000484954 HOXC11O43248 304 aaPredicted RBP3.12□□□□□ -1.91
VPS50-216ENST00000484954 EGFP01133 1207 aa3.12□□□□□ -1.91
VPS50-216ENST00000484954 PYGLP06737 847 aa3.12□□□□□ -1.91
VPS50-216ENST00000484954 IRF1P10914 325 aa3.12□□□□□ -1.91
VPS50-216ENST00000484954 ABCD3P28288 659 aa3.12□□□□□ -1.91
VPS50-216ENST00000484954 USP8P40818 1118 aa3.12□□□□□ -1.91
VPS50-216ENST00000484954 RAD23BP54727 409 aa3.12□□□□□ -1.91
VPS50-216ENST00000484954 PITX1P78337 314 aaPredicted RBP3.12□□□□□ -1.91
VPS50-216ENST00000484954 RUNX1T1Q06455 604 aa3.12□□□□□ -1.91
VPS50-216ENST00000484954 TRPC3Q13507 836 aa3.12□□□□□ -1.91
VPS50-216ENST00000484954 GTF2H2Q13888 395 aa3.12□□□□□ -1.91
VPS50-216ENST00000484954 KRT24Q2M2I5 525 aa3.12□□□□□ -1.91
VPS50-216ENST00000484954 FAM69AQ5T7M9 428 aa3.12□□□□□ -1.91
VPS50-216ENST00000484954 GTF2H2CQ6P1K8 395 aa3.12□□□□□ -1.91
VPS50-216ENST00000484954 NRROSQ86YC3 692 aa3.12□□□□□ -1.91
VPS50-216ENST00000484954 MAGEC3Q8TD91 643 aa3.12□□□□□ -1.91
VPS50-216ENST00000484954 SLC38A5Q8WUX1 472 aa3.12□□□□□ -1.91
VPS50-216ENST00000484954 RNF125Q96EQ8 232 aa3.12□□□□□ -1.91
VPS50-216ENST00000484954 SCLT1Q96NL6 688 aa3.12□□□□□ -1.91
VPS50-216ENST00000484954 SH3GL2Q99962 352 aa3.12□□□□□ -1.91
VPS50-216ENST00000484954 POLR3CQ9BUI4 534 aaPredicted RBP3.12□□□□□ -1.91
VPS50-216ENST00000484954 USP44Q9H0E7 712 aa3.12□□□□□ -1.91
VPS50-216ENST00000484954 DDX43Q9NXZ2 648 aaKnown RBP3.12□□□□□ -1.91
VPS50-216ENST00000484954 KCND2Q9NZV8 630 aa3.12□□□□□ -1.91
VPS50-216ENST00000484954 MPP6Q9NZW5 540 aa3.12□□□□□ -1.91
VPS50-216ENST00000484954 MKLN1Q9UL63 735 aa3.12□□□□□ -1.91
VPS50-216ENST00000484954 FAF1Q9UNN5 650 aaPredicted RBP3.12□□□□□ -1.91
VPS50-216ENST00000484954 DLGAP4Q9Y2H0 992 aa3.12□□□□□ -1.91
VPS50-216ENST00000484954 CAPN7Q9Y6W3 813 aa3.12□□□□□ -1.91
VPS50-216ENST00000484954 F9P00740 461 aa3.11□□□□□ -1.91
VPS50-216ENST00000484954 IL7RP16871 459 aa3.11□□□□□ -1.91
VPS50-216ENST00000484954 DDX5P17844 614 aaKnown RBP3.11□□□□□ -1.91
VPS50-216ENST00000484954 RRM1P23921 792 aa3.11□□□□□ -1.91
VPS50-216ENST00000484954 CDAP32320 146 aa3.11□□□□□ -1.91
VPS50-216ENST00000484954 ATP12AP54707 1039 aa3.11□□□□□ -1.91
VPS50-216ENST00000484954 VAMP2P63027 116 aa3.11□□□□□ -1.91
VPS50-216ENST00000484954 CSNK2A1P68400 391 aaPredicted RBP3.11□□□□□ -1.91
VPS50-216ENST00000484954 PTP4A2Q12974 167 aa3.11□□□□□ -1.91
VPS50-216ENST00000484954 BAK1Q16611 211 aa3.11□□□□□ -1.91
VPS50-216ENST00000484954 SIRPB2Q5JXA9 342 aa3.11□□□□□ -1.91
VPS50-216ENST00000484954 TRNP1Q6NT89 227 aa3.11□□□□□ -1.91
VPS50-216ENST00000484954 BRAT1Q6PJG6 821 aa3.11□□□□□ -1.91
VPS50-216ENST00000484954 HEATR4Q86WZ0 1026 aa3.11□□□□□ -1.91
VPS50-216ENST00000484954 SRBD1Q8N5C6 995 aaKnown RBP3.11□□□□□ -1.91
VPS50-216ENST00000484954 KLHDC9Q8NEP7 349 aa3.11□□□□□ -1.91
VPS50-216ENST00000484954 CSNK2A3Q8NEV1 391 aa3.11□□□□□ -1.91
VPS50-216ENST00000484954 PIGTQ969N2 578 aa3.11□□□□□ -1.91
VPS50-216ENST00000484954 FBXO17Q96EF6 278 aa3.11□□□□□ -1.91
VPS50-216ENST00000484954 IFIH1Q9BYX4 1025 aaKnown RBP3.11□□□□□ -1.91
VPS50-216ENST00000484954 KIF9Q9HAQ2 790 aa3.11□□□□□ -1.91
VPS50-216ENST00000484954 ACSS1Q9NUB1 689 aaPredicted RBP3.11□□□□□ -1.91
VPS50-216ENST00000484954 HCFC1R1Q9NWW0 138 aa3.11□□□□□ -1.91
VPS50-216ENST00000484954 INTS6Q9UL03 887 aaKnown RBP3.11□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms