RNA–Protein interactions for RNA: ENST00000473376.1

CHD3-209, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 562 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-209ENST00000473376 ARSEP51690 589 aa13.49□□□□□ -0.25
CHD3-209ENST00000473376 ZBED6P86452 979 aa13.49□□□□□ -0.25
CHD3-209ENST00000473376 CTBSQ01459 385 aa13.49□□□□□ -0.25
CHD3-209ENST00000473376 PTSQ03393 145 aa13.49□□□□□ -0.25
CHD3-209ENST00000473376 IQCB1Q15051 598 aa13.49□□□□□ -0.25
CHD3-209ENST00000473376 SMTNL2Q2TAL5 461 aa13.49□□□□□ -0.25
CHD3-209ENST00000473376 MANEAQ5SRI9 462 aa13.49□□□□□ -0.25
CHD3-209ENST00000473376 CCDC122Q5T0U0 273 aa13.49□□□□□ -0.25
CHD3-209ENST00000473376 RAET1GQ6H3X3 334 aa13.49□□□□□ -0.25
CHD3-209ENST00000473376 NYAP1Q6ZVC0 841 aa13.49□□□□□ -0.25
CHD3-209ENST00000473376 MAP7D3Q8IWC1 876 aa13.49□□□□□ -0.25
CHD3-209ENST00000473376 NAGSQ8N159 534 aa13.49□□□□□ -0.25
CHD3-209ENST00000473376 AVL9Q8NBF6 648 aa13.49□□□□□ -0.25
CHD3-209ENST00000473376 AGBL5Q8NDL9 886 aa13.49□□□□□ -0.25
CHD3-209ENST00000473376 HSPH1Q92598 858 aa13.49□□□□□ -0.25
CHD3-209ENST00000473376 AP2M1Q96CW1 435 aa13.49□□□□□ -0.25
CHD3-209ENST00000473376 COX14Q96I36 57 aa13.49□□□□□ -0.25
CHD3-209ENST00000473376 NAP1L5Q96NT1 182 aaPredicted RBP13.49□□□□□ -0.25
CHD3-209ENST00000473376 ZNF670Q9BS34 389 aa13.49□□□□□ -0.25
CHD3-209ENST00000473376 DDA1Q9BW61 102 aa13.49□□□□□ -0.25
CHD3-209ENST00000473376 ASPSCR1Q9BZE9 553 aa13.49□□□□□ -0.25
CHD3-209ENST00000473376 SEMA4CQ9C0C4 833 aa13.49□□□□□ -0.25
CHD3-209ENST00000473376 RMI1Q9H9A7 625 aa13.49□□□□□ -0.25
CHD3-209ENST00000473376 MYO1AQ9UBC5 1043 aa13.49□□□□□ -0.25
CHD3-209ENST00000473376 MOSPD1Q9UJG1 213 aa13.49□□□□□ -0.25
CHD3-209ENST00000473376 CAPN11Q9UMQ6 739 aa13.49□□□□□ -0.25
CHD3-209ENST00000473376 UNC13CQ8NB66 2214 aa13.49□□□□□ -0.25
CHD3-209ENST00000473376 KIF26BQ2KJY2 2108 aa13.48□□□□□ -0.25
CHD3-209ENST00000473376 IGHV5-10-1A0A0J9YXX1 117 aa13.48□□□□□ -0.25
CHD3-209ENST00000473376 A8MX80 341 aa13.48□□□□□ -0.25
CHD3-209ENST00000473376 ZNF487B1APH4 448 aa13.48□□□□□ -0.25
CHD3-209ENST00000473376 C9orf172C9J069 976 aa13.48□□□□□ -0.25
CHD3-209ENST00000473376 CAPN5O15484 640 aaPredicted RBP13.48□□□□□ -0.25
CHD3-209ENST00000473376 SKILP12757 684 aa13.48□□□□□ -0.25
CHD3-209ENST00000473376 ALDH4A1P30038 563 aa13.48□□□□□ -0.25
CHD3-209ENST00000473376 PBX1P40424 430 aa13.48□□□□□ -0.25
CHD3-209ENST00000473376 GNPDA1P46926 289 aa13.48□□□□□ -0.25
CHD3-209ENST00000473376 STC1P52823 247 aa13.48□□□□□ -0.25
CHD3-209ENST00000473376 RAB15P59190 212 aa13.48□□□□□ -0.25
CHD3-209ENST00000473376 TPM4P67936 248 aa13.48□□□□□ -0.25
CHD3-209ENST00000473376 LY6DQ14210 128 aa13.48□□□□□ -0.25
CHD3-209ENST00000473376 IFI16Q16666 785 aaKnown RBP13.48□□□□□ -0.25
CHD3-209ENST00000473376 PYCR3Q53H96 274 aa13.48□□□□□ -0.25
CHD3-209ENST00000473376 PHF19Q5T6S3 580 aa13.48□□□□□ -0.25
CHD3-209ENST00000473376 KIAA1614Q5VZ46 1190 aa13.48□□□□□ -0.25
CHD3-209ENST00000473376 LRRC66Q68CR7 880 aa13.48□□□□□ -0.25
CHD3-209ENST00000473376 WDR74Q6RFH5 385 aaPredicted RBP13.48□□□□□ -0.25
CHD3-209ENST00000473376 ZNF574Q6ZN55 896 aaPredicted RBP13.48□□□□□ -0.25
CHD3-209ENST00000473376 TMPRSS9Q7Z410 1059 aa13.48□□□□□ -0.25
CHD3-209ENST00000473376 VSIG1Q86XK7 387 aa13.48□□□□□ -0.25
CHD3-209ENST00000473376 USP7Q93009 1102 aa13.48□□□□□ -0.25
CHD3-209ENST00000473376 TEFMQ96QE5 360 aaKnown RBP13.48□□□□□ -0.25
CHD3-209ENST00000473376 OR2M4Q96R27 311 aa13.48□□□□□ -0.25
CHD3-209ENST00000473376 NUP85Q9BW27 656 aa13.48□□□□□ -0.25
CHD3-209ENST00000473376 THAP2Q9H0W7 228 aa13.48□□□□□ -0.25
CHD3-209ENST00000473376 ABCG8Q9H221 673 aa13.48□□□□□ -0.25
CHD3-209ENST00000473376 SEMA6CQ9H3T2 930 aa13.48□□□□□ -0.25
CHD3-209ENST00000473376 EPB41L1Q9H4G0 881 aa13.48□□□□□ -0.25
CHD3-209ENST00000473376 STARD5Q9NSY2 213 aa13.48□□□□□ -0.25
CHD3-209ENST00000473376 UVRAGQ9P2Y5 699 aa13.48□□□□□ -0.25
CHD3-209ENST00000473376 ANAPC7Q9UJX3 599 aa13.48□□□□□ -0.25
CHD3-209ENST00000473376 IGHV1OR21-1A0A087WYE8 117 aa13.47□□□□□ -0.25
CHD3-209ENST00000473376 GPR89AB7ZAQ6 455 aa13.47□□□□□ -0.25
CHD3-209ENST00000473376 PDHA1P08559 390 aa13.47□□□□□ -0.25
CHD3-209ENST00000473376 KRT7P08729 469 aa13.47□□□□□ -0.25
CHD3-209ENST00000473376 GPR89BP0CG08 455 aa13.47□□□□□ -0.25
CHD3-209ENST00000473376 THRAP10827 490 aa13.47□□□□□ -0.25
CHD3-209ENST00000473376 HGFP14210 728 aa13.47□□□□□ -0.25
CHD3-209ENST00000473376 SLC2A4P14672 509 aa13.47□□□□□ -0.25
CHD3-209ENST00000473376 TCF4P15884 667 aa13.47□□□□□ -0.25
CHD3-209ENST00000473376 ITIH1P19827 911 aa13.47□□□□□ -0.25
CHD3-209ENST00000473376 HNRNPH3P31942 346 aaKnown RBP13.47□□□□□ -0.25
CHD3-209ENST00000473376 MAZP56270 477 aaKnown RBP13.47□□□□□ -0.25
CHD3-209ENST00000473376 OR1D5P58170 312 aa13.47□□□□□ -0.25
CHD3-209ENST00000473376 MAXP61244 160 aa13.47□□□□□ -0.25
CHD3-209ENST00000473376 BIRC2Q13490 618 aa13.47□□□□□ -0.25
CHD3-209ENST00000473376 KRT81Q14533 505 aa13.47□□□□□ -0.25
CHD3-209ENST00000473376 C16orf72Q14CZ0 275 aa13.47□□□□□ -0.25
CHD3-209ENST00000473376 TCEA2Q15560 299 aa13.47□□□□□ -0.25
CHD3-209ENST00000473376 LINC00303Q3SY05 128 aa13.47□□□□□ -0.25
CHD3-209ENST00000473376 TDRD12Q587J7 1177 aaKnown RBP13.47□□□□□ -0.25
CHD3-209ENST00000473376 TMEM71Q6P5X7 295 aa13.47□□□□□ -0.25
CHD3-209ENST00000473376 ALKBH5Q6P6C2 394 aaKnown RBP13.47□□□□□ -0.25
CHD3-209ENST00000473376 SFRP1Q8N474 314 aa13.47□□□□□ -0.25
CHD3-209ENST00000473376 SH3KBP1Q96B97 665 aa13.47□□□□□ -0.25
CHD3-209ENST00000473376 FAF2Q96CS3 445 aa13.47□□□□□ -0.25
CHD3-209ENST00000473376 ZPBPQ9BS86 351 aa13.47□□□□□ -0.25
CHD3-209ENST00000473376 FUCA2Q9BTY2 467 aa13.47□□□□□ -0.25
CHD3-209ENST00000473376 TDRD1Q9BXT4 1180 aaKnown RBP13.47□□□□□ -0.25
CHD3-209ENST00000473376 ADNPQ9H2P0 1102 aa13.47□□□□□ -0.25
CHD3-209ENST00000473376 NT5MQ9NPB1 228 aa13.47□□□□□ -0.25
CHD3-209ENST00000473376 PCDHGA4Q9Y5G9 962 aa13.47□□□□□ -0.25
CHD3-209ENST00000473376 ST14Q9Y5Y6 855 aa13.47□□□□□ -0.25
CHD3-209ENST00000473376 SCN8AQ9UQD0 1980 aa13.46□□□□□ -0.25
CHD3-209ENST00000473376 TTC24A2A3L6 582 aaPredicted RBP13.46□□□□□ -0.25
CHD3-209ENST00000473376 OR5K4A6NMS3 321 aa13.46□□□□□ -0.25
CHD3-209ENST00000473376 PPM1DO15297 605 aa13.46□□□□□ -0.25
CHD3-209ENST00000473376 AK4P27144 223 aaPredicted RBP13.46□□□□□ -0.25
CHD3-209ENST00000473376 CSTF2P33240 577 aaKnown RBP eCLIP13.46□□□□□ -0.25
CHD3-209ENST00000473376 MAN1A1P33908 653 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms