RNA–Protein interactions for RNA: ENST00000470076.1

COL7A1-208, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 651 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-208ENST00000470076 PTPRRQ15256 657 aa17.43■□□□□ 0.38
COL7A1-208ENST00000470076 NFKBIBQ15653 356 aa17.43■□□□□ 0.38
COL7A1-208ENST00000470076 LRRC66Q68CR7 880 aa17.43■□□□□ 0.38
COL7A1-208ENST00000470076 ALG1LQ6GMV1 187 aa17.43■□□□□ 0.38
COL7A1-208ENST00000470076 TIGD7Q6NT04 549 aaPredicted RBP17.43■□□□□ 0.38
COL7A1-208ENST00000470076 ALKBH5Q6P6C2 394 aaKnown RBP17.43■□□□□ 0.38
COL7A1-208ENST00000470076 SLC30A9Q6PML9 568 aa17.43■□□□□ 0.38
COL7A1-208ENST00000470076 ADAMTSL4Q6UY14 1074 aa17.43■□□□□ 0.38
COL7A1-208ENST00000470076 ZNF765Q7L2R6 523 aa17.43■□□□□ 0.38
COL7A1-208ENST00000470076 TMPRSS9Q7Z410 1059 aa17.43■□□□□ 0.38
COL7A1-208ENST00000470076 NLRP8Q86W28 1048 aa17.43■□□□□ 0.38
COL7A1-208ENST00000470076 AP2M1Q96CW1 435 aa17.43■□□□□ 0.38
COL7A1-208ENST00000470076 MED8Q96G25 268 aa17.43■□□□□ 0.38
COL7A1-208ENST00000470076 SCARF2Q96GP6 870 aaPredicted RBP17.43■□□□□ 0.38
COL7A1-208ENST00000470076 B3GNT4Q9C0J1 378 aa17.43■□□□□ 0.38
COL7A1-208ENST00000470076 CDH19Q9H159 772 aa17.43■□□□□ 0.38
COL7A1-208ENST00000470076 SEMA6CQ9H3T2 930 aa17.43■□□□□ 0.38
COL7A1-208ENST00000470076 RDH14Q9HBH5 336 aa17.43■□□□□ 0.38
COL7A1-208ENST00000470076 SEPT10Q9P0V9 454 aa17.43■□□□□ 0.38
COL7A1-208ENST00000470076 AMACRQ9UHK6 382 aa17.43■□□□□ 0.38
COL7A1-208ENST00000470076 DNPEPQ9ULA0 475 aa17.43■□□□□ 0.38
COL7A1-208ENST00000470076 ASH1LQ9NR48 2969 aaKnown RBP17.43■□□□□ 0.38
COL7A1-208ENST00000470076 PRAMEF33A0A0G2JMD5 474 aa17.42■□□□□ 0.38
COL7A1-208ENST00000470076 A0A0J9YYE9 177 aa17.42■□□□□ 0.38
COL7A1-208ENST00000470076 MATN3O15232 486 aa17.42■□□□□ 0.38
COL7A1-208ENST00000470076 EFSO43281 561 aa17.42■□□□□ 0.38
COL7A1-208ENST00000470076 MFSD11O43934 449 aa17.42■□□□□ 0.38
COL7A1-208ENST00000470076 PRAMEF10O60809 474 aa17.42■□□□□ 0.38
COL7A1-208ENST00000470076 TRBC1P01850 177 aa17.42■□□□□ 0.38
COL7A1-208ENST00000470076 CD48P09326 243 aa17.42■□□□□ 0.38
COL7A1-208ENST00000470076 ADCY8P40145 1251 aa17.42■□□□□ 0.38
COL7A1-208ENST00000470076 POLD2P49005 469 aa17.42■□□□□ 0.38
COL7A1-208ENST00000470076 ARSEP51690 589 aa17.42■□□□□ 0.38
COL7A1-208ENST00000470076 EPHB1P54762 984 aa17.42■□□□□ 0.38
COL7A1-208ENST00000470076 OR1D5P58170 312 aa17.42■□□□□ 0.38
COL7A1-208ENST00000470076 DPYSL3Q14195 570 aa17.42■□□□□ 0.38
COL7A1-208ENST00000470076 TGIF1Q15583 401 aa17.42■□□□□ 0.38
COL7A1-208ENST00000470076 IFI16Q16666 785 aaKnown RBP17.42■□□□□ 0.38
COL7A1-208ENST00000470076 AMZ1Q400G9 498 aa17.42■□□□□ 0.38
COL7A1-208ENST00000470076 NCBP2-AS2Q69YL0 99 aa17.42■□□□□ 0.38
COL7A1-208ENST00000470076 PTCD2Q8WV60 388 aaKnown RBP17.42■□□□□ 0.38
COL7A1-208ENST00000470076 CPLX3Q8WVH0 158 aa17.42■□□□□ 0.38
COL7A1-208ENST00000470076 MAML1Q92585 1016 aa17.42■□□□□ 0.38
COL7A1-208ENST00000470076 FATE1Q969F0 183 aa17.42■□□□□ 0.38
COL7A1-208ENST00000470076 ZNF670Q9BS34 389 aa17.42■□□□□ 0.38
COL7A1-208ENST00000470076 SEMA4CQ9C0C4 833 aa17.42■□□□□ 0.38
COL7A1-208ENST00000470076 ABCG8Q9H221 673 aa17.42■□□□□ 0.38
COL7A1-208ENST00000470076 CBX8Q9HC52 389 aa17.42■□□□□ 0.38
COL7A1-208ENST00000470076 LUC7L2Q9Y383 392 aaKnown RBP17.42■□□□□ 0.38
COL7A1-208ENST00000470076 ST14Q9Y5Y6 855 aa17.42■□□□□ 0.38
COL7A1-208ENST00000470076 ZFC3H1O60293 1989 aaKnown RBP17.42■□□□□ 0.38
COL7A1-208ENST00000470076 HGSO14964 777 aaPredicted RBP17.41■□□□□ 0.38
COL7A1-208ENST00000470076 SOD1P00441 154 aa17.41■□□□□ 0.38
COL7A1-208ENST00000470076 CA4P22748 312 aa17.41■□□□□ 0.38
COL7A1-208ENST00000470076 CCNCP24863 283 aa17.41■□□□□ 0.38
COL7A1-208ENST00000470076 CD82P27701 267 aa17.41■□□□□ 0.38
COL7A1-208ENST00000470076 ETV5P41161 510 aa17.41■□□□□ 0.38
COL7A1-208ENST00000470076 MAPK10P53779 464 aa17.41■□□□□ 0.38
COL7A1-208ENST00000470076 PTSQ03393 145 aa17.41■□□□□ 0.38
COL7A1-208ENST00000470076 C16orf72Q14CZ0 275 aa17.41■□□□□ 0.38
COL7A1-208ENST00000470076 PDK2Q15119 407 aa17.41■□□□□ 0.38
COL7A1-208ENST00000470076 TMEM164Q5U3C3 297 aa17.41■□□□□ 0.38
COL7A1-208ENST00000470076 DOK6Q6PKX4 331 aa17.41■□□□□ 0.38
COL7A1-208ENST00000470076 LUZP1Q86V48 1076 aa17.41■□□□□ 0.38
COL7A1-208ENST00000470076 MAP7D3Q8IWC1 876 aa17.41■□□□□ 0.38
COL7A1-208ENST00000470076 RAVER1Q8IY67 606 aaKnown RBP17.41■□□□□ 0.38
COL7A1-208ENST00000470076 NAGSQ8N159 534 aa17.41■□□□□ 0.38
COL7A1-208ENST00000470076 KCTD6Q8NC69 237 aa17.41■□□□□ 0.38
COL7A1-208ENST00000470076 ZNF564Q8TBZ8 553 aaPredicted RBP17.41■□□□□ 0.38
COL7A1-208ENST00000470076 USP7Q93009 1102 aa17.41■□□□□ 0.38
COL7A1-208ENST00000470076 TSGA13Q96PP4 275 aa17.41■□□□□ 0.38
COL7A1-208ENST00000470076 OR2M4Q96R27 311 aa17.41■□□□□ 0.38
COL7A1-208ENST00000470076 CD84Q9UIB8 345 aa17.41■□□□□ 0.38
COL7A1-208ENST00000470076 PCDHB11Q9Y5F2 797 aa17.41■□□□□ 0.38
COL7A1-208ENST00000470076 A0A0U1RQS6 177 aa17.4■□□□□ 0.38
COL7A1-208ENST00000470076 AGRPO00253 132 aa17.4■□□□□ 0.38
COL7A1-208ENST00000470076 CD1CP29017 333 aa17.4■□□□□ 0.38
COL7A1-208ENST00000470076 ACTR1BP42025 376 aa17.4■□□□□ 0.38
COL7A1-208ENST00000470076 STC1P52823 247 aa17.4■□□□□ 0.38
COL7A1-208ENST00000470076 ACTR1AP61163 376 aa17.4■□□□□ 0.38
COL7A1-208ENST00000470076 RPL26P61254 145 aaKnown RBP17.4■□□□□ 0.38
COL7A1-208ENST00000470076 DSC2Q02487 901 aa17.4■□□□□ 0.38
COL7A1-208ENST00000470076 ANKRD20A8PQ5CZ79 823 aa17.4■□□□□ 0.38
COL7A1-208ENST00000470076 ZNF574Q6ZN55 896 aaPredicted RBP17.4■□□□□ 0.38
COL7A1-208ENST00000470076 RFLNAQ6ZTI6 216 aa17.4■□□□□ 0.38
COL7A1-208ENST00000470076 USP53Q70EK8 1073 aa17.4■□□□□ 0.38
COL7A1-208ENST00000470076 NRSN1Q8IZ57 195 aa17.4■□□□□ 0.38
COL7A1-208ENST00000470076 EXD1Q8NHP7 514 aa17.4■□□□□ 0.38
COL7A1-208ENST00000470076 PATE1Q8WXA2 126 aa17.4■□□□□ 0.38
COL7A1-208ENST00000470076 SCAMP4Q969E2 229 aa17.4■□□□□ 0.38
COL7A1-208ENST00000470076 SGF29Q96ES7 293 aa17.4■□□□□ 0.38
COL7A1-208ENST00000470076 NUDT22Q9BRQ3 303 aa17.4■□□□□ 0.38
COL7A1-208ENST00000470076 TDRD1Q9BXT4 1180 aaKnown RBP17.4■□□□□ 0.38
COL7A1-208ENST00000470076 RBM22Q9NW64 420 aaKnown RBP eCLIP17.4■□□□□ 0.38
COL7A1-208ENST00000470076 FOXJ2Q9P0K8 574 aa17.4■□□□□ 0.38
COL7A1-208ENST00000470076 LCMT1Q9UIC8 334 aa17.4■□□□□ 0.38
COL7A1-208ENST00000470076 RPL26L1Q9UNX3 145 aaKnown RBP17.4■□□□□ 0.38
COL7A1-208ENST00000470076 TMEM98Q9Y2Y6 226 aa17.4■□□□□ 0.38
COL7A1-208ENST00000470076 IGHV5-10-1A0A0J9YXX1 117 aa17.39■□□□□ 0.37
COL7A1-208ENST00000470076 SYCE3A1L190 88 aa17.39■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms