RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 ZNF830Q96NB3 372 aaPredicted RBP7.06□□□□□ -1.28
VPS41-208ENST00000448833 NAP1L5Q96NT1 182 aaPredicted RBP7.06□□□□□ -1.28
VPS41-208ENST00000448833 TSGA13Q96PP4 275 aa7.06□□□□□ -1.28
VPS41-208ENST00000448833 HS3ST6Q96QI5 342 aa7.06□□□□□ -1.28
VPS41-208ENST00000448833 SRPK1Q96SB4 655 aaKnown RBP7.06□□□□□ -1.28
VPS41-208ENST00000448833 SEMA3CQ99985 751 aa7.06□□□□□ -1.28
VPS41-208ENST00000448833 ZNF670Q9BS34 389 aa7.06□□□□□ -1.28
VPS41-208ENST00000448833 NUP85Q9BW27 656 aa7.06□□□□□ -1.28
VPS41-208ENST00000448833 LGR4Q9BXB1 951 aa7.06□□□□□ -1.28
VPS41-208ENST00000448833 ADGRE3Q9BY15 652 aa7.06□□□□□ -1.28
VPS41-208ENST00000448833 FRMD8Q9BZ67 464 aaPredicted RBP7.06□□□□□ -1.28
VPS41-208ENST00000448833 ASPSCR1Q9BZE9 553 aa7.06□□□□□ -1.28
VPS41-208ENST00000448833 TRIM7Q9C029 511 aa7.06□□□□□ -1.28
VPS41-208ENST00000448833 THAP2Q9H0W7 228 aa7.06□□□□□ -1.28
VPS41-208ENST00000448833 STN1Q9H668 368 aaKnown RBP7.06□□□□□ -1.28
VPS41-208ENST00000448833 RMI1Q9H9A7 625 aa7.06□□□□□ -1.28
VPS41-208ENST00000448833 PCDH18Q9HCL0 1135 aa7.06□□□□□ -1.28
VPS41-208ENST00000448833 MRPL40Q9NQ50 206 aaKnown RBP7.06□□□□□ -1.28
VPS41-208ENST00000448833 RAD18Q9NS91 495 aa7.06□□□□□ -1.28
VPS41-208ENST00000448833 ZNHIT6Q9NWK9 470 aaKnown RBP7.06□□□□□ -1.28
VPS41-208ENST00000448833 GOLGA6AQ9NYA3 693 aa7.06□□□□□ -1.28
VPS41-208ENST00000448833 SLC17A4Q9Y2C5 497 aa7.06□□□□□ -1.28
VPS41-208ENST00000448833 RNF215Q9Y6U7 377 aa7.06□□□□□ -1.28
VPS41-208ENST00000448833 A0A0J9YYE9 177 aa7.05□□□□□ -1.28
VPS41-208ENST00000448833 ZNF487B1APH4 448 aa7.05□□□□□ -1.28
VPS41-208ENST00000448833 GPR89AB7ZAQ6 455 aa7.05□□□□□ -1.28
VPS41-208ENST00000448833 B8ZZF3 427 aa7.05□□□□□ -1.28
VPS41-208ENST00000448833 CAPN5O15484 640 aaPredicted RBP7.05□□□□□ -1.28
VPS41-208ENST00000448833 PEX11BO96011 259 aa7.05□□□□□ -1.28
VPS41-208ENST00000448833 TRBC1P01850 177 aa7.05□□□□□ -1.28
VPS41-208ENST00000448833 PRKCGP05129 697 aa7.05□□□□□ -1.28
VPS41-208ENST00000448833 FGF1P05230 155 aa7.05□□□□□ -1.28
VPS41-208ENST00000448833 CELA2BP08218 269 aaPredicted RBP7.05□□□□□ -1.28
VPS41-208ENST00000448833 H2AFZP0C0S5 128 aa7.05□□□□□ -1.28
VPS41-208ENST00000448833 GPR89BP0CG08 455 aa7.05□□□□□ -1.28
VPS41-208ENST00000448833 IL1R2P27930 398 aa7.05□□□□□ -1.28
VPS41-208ENST00000448833 ALDH4A1P30038 563 aa7.05□□□□□ -1.28
VPS41-208ENST00000448833 ADCY8P40145 1251 aa7.05□□□□□ -1.28
VPS41-208ENST00000448833 ETV3P41162 512 aa7.05□□□□□ -1.28
VPS41-208ENST00000448833 NOP2P46087 812 aaKnown RBP7.05□□□□□ -1.28
VPS41-208ENST00000448833 GNPDA1P46926 289 aa7.05□□□□□ -1.28
VPS41-208ENST00000448833 PDX1P52945 283 aa7.05□□□□□ -1.28
VPS41-208ENST00000448833 CLN3Q13286 438 aa7.05□□□□□ -1.28
VPS41-208ENST00000448833 TRIM14Q14142 442 aa7.05□□□□□ -1.28
VPS41-208ENST00000448833 ANKRD20A8PQ5CZ79 823 aa7.05□□□□□ -1.28
VPS41-208ENST00000448833 MANEAQ5SRI9 462 aa7.05□□□□□ -1.28
VPS41-208ENST00000448833 ZFYVE27Q5T4F4 411 aa7.05□□□□□ -1.28
VPS41-208ENST00000448833 PHF19Q5T6S3 580 aa7.05□□□□□ -1.28
VPS41-208ENST00000448833 HGSNATQ68CP4 663 aa7.05□□□□□ -1.28
VPS41-208ENST00000448833 ALG1LQ6GMV1 187 aa7.05□□□□□ -1.28
VPS41-208ENST00000448833 H2AFVQ71UI9 128 aa7.05□□□□□ -1.28
VPS41-208ENST00000448833 BZW1Q7L1Q6 419 aaKnown RBP7.05□□□□□ -1.28
VPS41-208ENST00000448833 HSD11B1LQ7Z5J1 315 aa7.05□□□□□ -1.28
VPS41-208ENST00000448833 TECPR1Q7Z6L1 1165 aa7.05□□□□□ -1.28
VPS41-208ENST00000448833 C17orf82Q86X59 251 aaPredicted RBP7.05□□□□□ -1.28
VPS41-208ENST00000448833 VSIG1Q86XK7 387 aa7.05□□□□□ -1.28
VPS41-208ENST00000448833 GALNT13Q8IUC8 556 aa7.05□□□□□ -1.28
VPS41-208ENST00000448833 PGBD5Q8N414 524 aa7.05□□□□□ -1.28
VPS41-208ENST00000448833 AGBL5Q8NDL9 886 aa7.05□□□□□ -1.28
VPS41-208ENST00000448833 OR4D9Q8NGE8 314 aa7.05□□□□□ -1.28
VPS41-208ENST00000448833 CPLX3Q8WVH0 158 aa7.05□□□□□ -1.28
VPS41-208ENST00000448833 PIH1D2Q8WWB5 315 aa7.05□□□□□ -1.28
VPS41-208ENST00000448833 MAML1Q92585 1016 aa7.05□□□□□ -1.28
VPS41-208ENST00000448833 RNF166Q96A37 237 aaPredicted RBP7.05□□□□□ -1.28
VPS41-208ENST00000448833 SGF29Q96ES7 293 aa7.05□□□□□ -1.28
VPS41-208ENST00000448833 SCARF2Q96GP6 870 aaPredicted RBP7.05□□□□□ -1.28
VPS41-208ENST00000448833 AHCYL2Q96HN2 611 aaKnown RBP7.05□□□□□ -1.28
VPS41-208ENST00000448833 TAAR9Q96RI9 348 aa7.05□□□□□ -1.28
VPS41-208ENST00000448833 ARHGAP9Q9BRR9 750 aa7.05□□□□□ -1.28
VPS41-208ENST00000448833 MAK16Q9BXY0 300 aaKnown RBP7.05□□□□□ -1.28
VPS41-208ENST00000448833 LDHAL6BQ9BYZ2 381 aaPredicted RBP7.05□□□□□ -1.28
VPS41-208ENST00000448833 FOXP3Q9BZS1 431 aa7.05□□□□□ -1.28
VPS41-208ENST00000448833 XPO4Q9C0E2 1151 aaKnown RBP7.05□□□□□ -1.28
VPS41-208ENST00000448833 DEF6Q9H4E7 631 aa7.05□□□□□ -1.28
VPS41-208ENST00000448833 EPB41L1Q9H4G0 881 aa7.05□□□□□ -1.28
VPS41-208ENST00000448833 CAAP1Q9H8G2 361 aa7.05□□□□□ -1.28
VPS41-208ENST00000448833 NT5MQ9NPB1 228 aa7.05□□□□□ -1.28
VPS41-208ENST00000448833 SPATS2LQ9NUQ6 558 aaKnown RBP7.05□□□□□ -1.28
VPS41-208ENST00000448833 RBM22Q9NW64 420 aaKnown RBP eCLIP7.05□□□□□ -1.28
VPS41-208ENST00000448833 TAAR2Q9P1P5 351 aa7.05□□□□□ -1.28
VPS41-208ENST00000448833 VPS18Q9P253 973 aa7.05□□□□□ -1.28
VPS41-208ENST00000448833 PISDQ9UG56 409 aa7.05□□□□□ -1.28
VPS41-208ENST00000448833 RABGEF1Q9UJ41 708 aa7.05□□□□□ -1.28
VPS41-208ENST00000448833 SUFUQ9UMX1 484 aa7.05□□□□□ -1.28
VPS41-208ENST00000448833 LOXL2Q9Y4K0 774 aa7.05□□□□□ -1.28
VPS41-208ENST00000448833 PCDHGA10Q9Y5H3 936 aa7.05□□□□□ -1.28
VPS41-208ENST00000448833 A0A087X0T9 212 aa7.04□□□□□ -1.28
VPS41-208ENST00000448833 A0A1W2PNU3 283 aaPredicted RBP7.04□□□□□ -1.28
VPS41-208ENST00000448833 NPIPB15A6NHN6 443 aaPredicted RBP7.04□□□□□ -1.28
VPS41-208ENST00000448833 OR5K4A6NMS3 321 aa7.04□□□□□ -1.28
VPS41-208ENST00000448833 ANKRD66B4E2M5 251 aa7.04□□□□□ -1.28
VPS41-208ENST00000448833 IQCJ-SCHIP1C9J366 451 aaPredicted RBP7.04□□□□□ -1.28
VPS41-208ENST00000448833 STMND1H3BQB6 276 aa7.04□□□□□ -1.28
VPS41-208ENST00000448833 CBFA2T2O43439 604 aa7.04□□□□□ -1.28
VPS41-208ENST00000448833 B4GAT1O43505 415 aa7.04□□□□□ -1.28
VPS41-208ENST00000448833 FZD6O60353 706 aa7.04□□□□□ -1.28
VPS41-208ENST00000448833 PROSCO94903 275 aa7.04□□□□□ -1.28
VPS41-208ENST00000448833 ECEL1O95672 775 aa7.04□□□□□ -1.28
VPS41-208ENST00000448833 FAM228BP0C875 321 aa7.04□□□□□ -1.28
VPS41-208ENST00000448833 ZFXP17010 805 aaPredicted RBP7.04□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms