RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 ITGA8P53708 1063 aa12.19□□□□□ -0.46
PTPRF-208ENST00000437607 DRG2P55039 364 aaKnown RBP12.19□□□□□ -0.46
PTPRF-208ENST00000437607 CLDN2P57739 230 aa12.19□□□□□ -0.46
PTPRF-208ENST00000437607 VSNL1P62760 191 aa12.19□□□□□ -0.46
PTPRF-208ENST00000437607 E2F1Q01094 437 aa12.19□□□□□ -0.46
PTPRF-208ENST00000437607 SLC10A7Q0GE19 358 aa12.19□□□□□ -0.46
PTPRF-208ENST00000437607 SEMA5AQ13591 1074 aa12.19□□□□□ -0.46
PTPRF-208ENST00000437607 NAA30Q147X3 362 aaPredicted RBP12.19□□□□□ -0.46
PTPRF-208ENST00000437607 MORF4L2Q15014 288 aa12.19□□□□□ -0.46
PTPRF-208ENST00000437607 PARP6Q2NL67 630 aa12.19□□□□□ -0.46
PTPRF-208ENST00000437607 INO80DQ53TQ3 878 aaPredicted RBP12.19□□□□□ -0.46
PTPRF-208ENST00000437607 RNASEH2BQ5TBB1 312 aaKnown RBP12.19□□□□□ -0.46
PTPRF-208ENST00000437607 C22orf39Q6P5X5 142 aa12.19□□□□□ -0.46
PTPRF-208ENST00000437607 PPP1R21Q6ZMI0 780 aa12.19□□□□□ -0.46
PTPRF-208ENST00000437607 GCNT7Q6ZNI0 430 aa12.19□□□□□ -0.46
PTPRF-208ENST00000437607 HOOK3Q86VS8 718 aa12.19□□□□□ -0.46
PTPRF-208ENST00000437607 HORMAD1Q86X24 394 aa12.19□□□□□ -0.46
PTPRF-208ENST00000437607 SPACA3Q8IXA5 215 aa12.19□□□□□ -0.46
PTPRF-208ENST00000437607 TEX26Q8N6G2 289 aa12.19□□□□□ -0.46
PTPRF-208ENST00000437607 ATP11CQ8NB49 1132 aa12.19□□□□□ -0.46
PTPRF-208ENST00000437607 SEC14L1Q92503 715 aa12.19□□□□□ -0.46
PTPRF-208ENST00000437607 FMO2Q99518 471 aa12.19□□□□□ -0.46
PTPRF-208ENST00000437607 MGME1Q9BQP7 344 aa12.19□□□□□ -0.46
PTPRF-208ENST00000437607 GLOD4Q9HC38 313 aa12.19□□□□□ -0.46
PTPRF-208ENST00000437607 EIF2B3Q9NR50 452 aaKnown RBP12.19□□□□□ -0.46
PTPRF-208ENST00000437607 GRHL1Q9NZI5 618 aa12.19□□□□□ -0.46
PTPRF-208ENST00000437607 ANAPC5Q9UJX4 755 aa12.19□□□□□ -0.46
PTPRF-208ENST00000437607 UNC13CQ8NB66 2214 aa12.18□□□□□ -0.46
PTPRF-208ENST00000437607 KPNA3O00505 521 aaPredicted RBP12.18□□□□□ -0.46
PTPRF-208ENST00000437607 FFAR2O15552 330 aa12.18□□□□□ -0.46
PTPRF-208ENST00000437607 ZNF821O75541 412 aaPredicted RBP12.18□□□□□ -0.46
PTPRF-208ENST00000437607 ANXA9O76027 345 aa12.18□□□□□ -0.46
PTPRF-208ENST00000437607 IGSF6O95976 241 aa12.18□□□□□ -0.46
PTPRF-208ENST00000437607 APRTP07741 180 aa12.18□□□□□ -0.46
PTPRF-208ENST00000437607 CKMT1AP12532 417 aa12.18□□□□□ -0.46
PTPRF-208ENST00000437607 ITIH2P19823 946 aa12.18□□□□□ -0.46
PTPRF-208ENST00000437607 TPSB2P20231 275 aa12.18□□□□□ -0.46
PTPRF-208ENST00000437607 GEMP55040 296 aa12.18□□□□□ -0.46
PTPRF-208ENST00000437607 PLTPP55058 493 aa12.18□□□□□ -0.46
PTPRF-208ENST00000437607 MAXP61244 160 aa12.18□□□□□ -0.46
PTPRF-208ENST00000437607 DAB2P98082 770 aa12.18□□□□□ -0.46
PTPRF-208ENST00000437607 SLC20A2Q08357 652 aa12.18□□□□□ -0.46
PTPRF-208ENST00000437607 KCNJ11Q14654 390 aa12.18□□□□□ -0.46
PTPRF-208ENST00000437607 TPSAB1Q15661 275 aa12.18□□□□□ -0.46
PTPRF-208ENST00000437607 SEL1L3Q68CR1 1132 aa12.18□□□□□ -0.46
PTPRF-208ENST00000437607 NEK5Q6P3R8 708 aa12.18□□□□□ -0.46
PTPRF-208ENST00000437607 GPR155Q7Z3F1 870 aa12.18□□□□□ -0.46
PTPRF-208ENST00000437607 ABI3BPQ7Z7G0 1075 aa12.18□□□□□ -0.46
PTPRF-208ENST00000437607 GSPT2Q8IYD1 628 aaKnown RBP12.18□□□□□ -0.46
PTPRF-208ENST00000437607 ZNF843Q8N446 348 aa12.18□□□□□ -0.46
PTPRF-208ENST00000437607 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP12.18□□□□□ -0.46
PTPRF-208ENST00000437607 CNTD1Q8N815 330 aa12.18□□□□□ -0.46
PTPRF-208ENST00000437607 EIF1ADQ8N9N8 165 aaKnown RBP12.18□□□□□ -0.46
PTPRF-208ENST00000437607 LSM14AQ8ND56 463 aaKnown RBP12.18□□□□□ -0.46
PTPRF-208ENST00000437607 TMIEQ8NEW7 156 aa12.18□□□□□ -0.46
PTPRF-208ENST00000437607 CPT1BQ92523 772 aa12.18□□□□□ -0.46
PTPRF-208ENST00000437607 GDAP1L1Q96MZ0 367 aa12.18□□□□□ -0.46
PTPRF-208ENST00000437607 PSKH2Q96QS6 385 aa12.18□□□□□ -0.46
PTPRF-208ENST00000437607 FCRL5Q96RD9 977 aa12.18□□□□□ -0.46
PTPRF-208ENST00000437607 FSD1LQ9BXM9 530 aa12.18□□□□□ -0.46
PTPRF-208ENST00000437607 PARD6BQ9BYG5 372 aa12.18□□□□□ -0.46
PTPRF-208ENST00000437607 SLC25A51Q9H1U9 297 aa12.18□□□□□ -0.46
PTPRF-208ENST00000437607 ETNK1Q9HBU6 452 aa12.18□□□□□ -0.46
PTPRF-208ENST00000437607 GPR27Q9NS67 375 aa12.18□□□□□ -0.46
PTPRF-208ENST00000437607 ATP8A1Q9Y2Q0 1164 aa12.18□□□□□ -0.46
PTPRF-208ENST00000437607 FCF1Q9Y324 198 aaKnown RBP12.18□□□□□ -0.46
PTPRF-208ENST00000437607 ACTL7AQ9Y615 435 aa12.18□□□□□ -0.46
PTPRF-208ENST00000437607 TEX51A0A1B0GUA7 166 aa12.17□□□□□ -0.46
PTPRF-208ENST00000437607 ERI2A8K979 691 aaKnown RBP12.17□□□□□ -0.46
PTPRF-208ENST00000437607 BHMG1C9JSJ3 638 aaPredicted RBP12.17□□□□□ -0.46
PTPRF-208ENST00000437607 PSMD3O43242 534 aa12.17□□□□□ -0.46
PTPRF-208ENST00000437607 OPA1O60313 960 aa12.17□□□□□ -0.46
PTPRF-208ENST00000437607 TMEM63AO94886 807 aa12.17□□□□□ -0.46
PTPRF-208ENST00000437607 METTL18O95568 372 aa12.17□□□□□ -0.46
PTPRF-208ENST00000437607 PLA2G2AP14555 144 aa12.17□□□□□ -0.46
PTPRF-208ENST00000437607 HNRNPA2B1P22626 353 aaKnown RBP12.17□□□□□ -0.46
PTPRF-208ENST00000437607 CA4P22748 312 aa12.17□□□□□ -0.46
PTPRF-208ENST00000437607 CD68P34810 354 aaPredicted RBP12.17□□□□□ -0.46
PTPRF-208ENST00000437607 CARSP49589 748 aaKnown RBP12.17□□□□□ -0.46
PTPRF-208ENST00000437607 CXADRP78310 365 aa12.17□□□□□ -0.46
PTPRF-208ENST00000437607 SARNPP82979 210 aaKnown RBP12.17□□□□□ -0.46
PTPRF-208ENST00000437607 DSC2Q02487 901 aa12.17□□□□□ -0.46
PTPRF-208ENST00000437607 FGL2Q14314 439 aa12.17□□□□□ -0.46
PTPRF-208ENST00000437607 TMEM259Q4ZIN3 620 aa12.17□□□□□ -0.46
PTPRF-208ENST00000437607 ZNF542PQ5EBM4 170 aa12.17□□□□□ -0.46
PTPRF-208ENST00000437607 ALG1LQ6GMV1 187 aa12.17□□□□□ -0.46
PTPRF-208ENST00000437607 HIBCHQ6NVY1 386 aaPredicted RBP12.17□□□□□ -0.46
PTPRF-208ENST00000437607 CEP128Q6ZU80 1094 aa12.17□□□□□ -0.46
PTPRF-208ENST00000437607 TSEN2Q8NCE0 465 aaKnown RBP12.17□□□□□ -0.46
PTPRF-208ENST00000437607 FBXO25Q8TCJ0 367 aa12.17□□□□□ -0.46
PTPRF-208ENST00000437607 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.17□□□□□ -0.463e-9■■■■■ 80.2
PTPRF-208ENST00000437607 HIC2Q96JB3 615 aa12.17□□□□□ -0.46
PTPRF-208ENST00000437607 EXOC2Q96KP1 924 aa12.17□□□□□ -0.46
PTPRF-208ENST00000437607 BMFQ96LC9 184 aa12.17□□□□□ -0.46
PTPRF-208ENST00000437607 APOLD1Q96LR9 279 aa12.17□□□□□ -0.46
PTPRF-208ENST00000437607 FRMD8Q9BZ67 464 aaPredicted RBP12.17□□□□□ -0.46
PTPRF-208ENST00000437607 TM6SF2Q9BZW4 377 aa12.17□□□□□ -0.46
PTPRF-208ENST00000437607 CEP44Q9C0F1 390 aa12.17□□□□□ -0.46
PTPRF-208ENST00000437607 TNKS2Q9H2K2 1166 aa12.17□□□□□ -0.46
PTPRF-208ENST00000437607 LRRC40Q9H9A6 602 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms