RNA–Protein interactions for RNA: ENST00000429896.6

PTCH1-207, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 6,563 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-207ENST00000429896 PM20D1Q6GTS8 502 aa12.91□□□□□ -0.34
PTCH1-207ENST00000429896 ANO7Q6IWH7 933 aa12.91□□□□□ -0.34
PTCH1-207ENST00000429896 SREK1IP1Q8N9Q2 155 aaPredicted RBP12.91□□□□□ -0.34
PTCH1-207ENST00000429896 VN1R2Q8NFZ6 395 aa12.91□□□□□ -0.34
PTCH1-207ENST00000429896 FGF13Q92913 245 aa12.91□□□□□ -0.34
PTCH1-207ENST00000429896 CXCL16Q9H2A7 254 aa12.91□□□□□ -0.34
PTCH1-207ENST00000429896 EIF3LQ9Y262 564 aaKnown RBP12.91□□□□□ -0.34
PTCH1-207ENST00000429896 KAT6AQ92794 2004 aa12.9□□□□□ -0.34
PTCH1-207ENST00000429896 CDK14O94921 469 aa12.9□□□□□ -0.34
PTCH1-207ENST00000429896 FAM107AO95990 144 aa12.9□□□□□ -0.34
PTCH1-207ENST00000429896 HLA-DQB2P05538 268 aa12.9□□□□□ -0.34
PTCH1-207ENST00000429896 SERPINB5P36952 375 aa12.9□□□□□ -0.34
PTCH1-207ENST00000429896 CORO7P57737 925 aa12.9□□□□□ -0.34
PTCH1-207ENST00000429896 ABRQ12979 859 aa12.9□□□□□ -0.34
PTCH1-207ENST00000429896 PAFAH1B3Q15102 231 aaKnown RBP12.9□□□□□ -0.34
PTCH1-207ENST00000429896 EML3Q32P44 896 aa12.9□□□□□ -0.34
PTCH1-207ENST00000429896 LRRC73Q5JTD7 316 aa12.9□□□□□ -0.34
PTCH1-207ENST00000429896 ICE2Q659A1 982 aa12.9□□□□□ -0.34
PTCH1-207ENST00000429896 BNIPLQ7Z465 357 aa12.9□□□□□ -0.34
PTCH1-207ENST00000429896 CPNE8Q86YQ8 564 aa12.9□□□□□ -0.34
PTCH1-207ENST00000429896 KLK6Q92876 244 aa12.9□□□□□ -0.34
PTCH1-207ENST00000429896 FCRL5Q96RD9 977 aa12.9□□□□□ -0.34
PTCH1-207ENST00000429896 LCHNA4D1U4 455 aa12.9□□□□□ -0.34
PTCH1-207ENST00000429896 LAMTOR5O43504 91 aa12.9□□□□□ -0.34
PTCH1-207ENST00000429896 CPSF4O95639 269 aaKnown RBP12.9□□□□□ -0.34
PTCH1-207ENST00000429896 CFIP05156 583 aa12.9□□□□□ -0.34
PTCH1-207ENST00000429896 PIK3CGP48736 1102 aa12.9□□□□□ -0.34
PTCH1-207ENST00000429896 ILF3Q12906 894 aaKnown RBP eCLIP12.9□□□□□ -0.34
PTCH1-207ENST00000429896 N4BP2L1Q5TBK1 243 aaPredicted RBP12.9□□□□□ -0.34
PTCH1-207ENST00000429896 TEX9Q8N6V9 391 aa12.9□□□□□ -0.34
PTCH1-207ENST00000429896 FAM3CQ92520 227 aa12.9□□□□□ -0.34
PTCH1-207ENST00000429896 DNMT3BQ9UBC3 853 aaKnown RBP12.9□□□□□ -0.34
PTCH1-207ENST00000429896 DLEC1Q9Y238 1755 aa12.9□□□□□ -0.34
PTCH1-207ENST00000429896 PRAMEF11O60813 436 aa12.9□□□□□ -0.34
PTCH1-207ENST00000429896 PRAMEF1O95521 474 aa12.9□□□□□ -0.34
PTCH1-207ENST00000429896 TNFRSF8P28908 595 aa12.9□□□□□ -0.34
PTCH1-207ENST00000429896 WDR45BQ5MNZ6 344 aa12.9□□□□□ -0.34
PTCH1-207ENST00000429896 CACHD1Q5VU97 1274 aa12.9□□□□□ -0.34
PTCH1-207ENST00000429896 SNX30Q5VWJ9 437 aa12.9□□□□□ -0.34
PTCH1-207ENST00000429896 TXNRD3NBQ6F5E7 133 aa12.9□□□□□ -0.34
PTCH1-207ENST00000429896 PTCRAQ6ISU1 281 aaPredicted RBP12.9□□□□□ -0.34
PTCH1-207ENST00000429896 ZNF438Q7Z4V0 828 aa12.9□□□□□ -0.34
PTCH1-207ENST00000429896 TAF8Q7Z7C8 310 aa12.9□□□□□ -0.34
PTCH1-207ENST00000429896 CAMK1DQ8IU85 385 aa12.9□□□□□ -0.34
PTCH1-207ENST00000429896 ZNF655Q8N720 491 aaPredicted RBP12.9□□□□□ -0.34
PTCH1-207ENST00000429896 EME1Q96AY2 570 aa12.9□□□□□ -0.34
PTCH1-207ENST00000429896 CENPTQ96BT3 561 aa12.9□□□□□ -0.34
PTCH1-207ENST00000429896 STOML1Q9UBI4 398 aa12.9□□□□□ -0.34
PTCH1-207ENST00000429896 USP1O94782 785 aa12.9□□□□□ -0.34
PTCH1-207ENST00000429896 ANXA5P08758 320 aa12.9□□□□□ -0.34
PTCH1-207ENST00000429896 LTA4HP09960 611 aaKnown RBP12.9□□□□□ -0.34
PTCH1-207ENST00000429896 ALOX15P16050 662 aaPredicted RBP12.9□□□□□ -0.34
PTCH1-207ENST00000429896 ABCG1P45844 678 aa12.9□□□□□ -0.34
PTCH1-207ENST00000429896 SERINC3Q13530 473 aa12.9□□□□□ -0.34
PTCH1-207ENST00000429896 KBTBD12Q3ZCT8 623 aa12.9□□□□□ -0.34
PTCH1-207ENST00000429896 FBXW10Q5XX13 1052 aa12.9□□□□□ -0.34
PTCH1-207ENST00000429896 KLHL35Q6PF15 583 aa12.9□□□□□ -0.34
PTCH1-207ENST00000429896 NDNQ99608 321 aa12.9□□□□□ -0.34
PTCH1-207ENST00000429896 ABCG8Q9H221 673 aa12.9□□□□□ -0.34
PTCH1-207ENST00000429896 NCKIPSDQ9NZQ3 722 aa12.9□□□□□ -0.34
PTCH1-207ENST00000429896 NDOR1Q9UHB4 597 aa12.9□□□□□ -0.34
PTCH1-207ENST00000429896 TCAF1Q9Y4C2 921 aa12.9□□□□□ -0.34
PTCH1-207ENST00000429896 RASSF9O75901 435 aa12.9□□□□□ -0.35
PTCH1-207ENST00000429896 ALPPL2P10696 532 aa12.9□□□□□ -0.35
PTCH1-207ENST00000429896 DRG2P55039 364 aaKnown RBP12.9□□□□□ -0.35
PTCH1-207ENST00000429896 BEND5Q7L4P6 421 aa12.9□□□□□ -0.35
PTCH1-207ENST00000429896 TMCO1Q9UM00 188 aa12.9□□□□□ -0.35
PTCH1-207ENST00000429896 DRICH1Q6PGQ1 229 aaPredicted RBP12.89□□□□□ -0.35
PTCH1-207ENST00000429896 EIF1ADQ8N9N8 165 aaKnown RBP12.89□□□□□ -0.35
PTCH1-207ENST00000429896 PCDHB1Q9Y5F3 818 aa12.89□□□□□ -0.35
PTCH1-207ENST00000429896 PHGDHO43175 533 aaKnown RBP12.89□□□□□ -0.35
PTCH1-207ENST00000429896 DYRK3O43781 588 aa12.89□□□□□ -0.35
PTCH1-207ENST00000429896 GSNP06396 782 aa12.89□□□□□ -0.35
PTCH1-207ENST00000429896 ATF6P18850 670 aa12.89□□□□□ -0.35
PTCH1-207ENST00000429896 TFE3P19532 575 aaPredicted RBP12.89□□□□□ -0.35
PTCH1-207ENST00000429896 MED21Q13503 144 aa12.89□□□□□ -0.35
PTCH1-207ENST00000429896 EIF4HQ15056 248 aaKnown RBP12.89□□□□□ -0.35
PTCH1-207ENST00000429896 SPDYCQ5MJ68 293 aa12.89□□□□□ -0.35
PTCH1-207ENST00000429896 LINC01599Q8WXQ3 324 aa12.89□□□□□ -0.35
PTCH1-207ENST00000429896 SEC16BQ96JE7 1060 aa12.89□□□□□ -0.35
PTCH1-207ENST00000429896 ACOX2Q99424 681 aa12.89□□□□□ -0.35
PTCH1-207ENST00000429896 FBXO5Q9UKT4 447 aa12.89□□□□□ -0.35
PTCH1-207ENST00000429896 PSMD12O00232 456 aaPredicted RBP12.89□□□□□ -0.35
PTCH1-207ENST00000429896 NPC1O15118 1278 aa12.89□□□□□ -0.35
PTCH1-207ENST00000429896 SH3BGRLO75368 114 aa12.89□□□□□ -0.35
PTCH1-207ENST00000429896 BLKP51451 505 aa12.89□□□□□ -0.35
PTCH1-207ENST00000429896 CCNHP51946 323 aaPredicted RBP12.89□□□□□ -0.35
PTCH1-207ENST00000429896 CTBP1Q13363 440 aa12.89□□□□□ -0.35
PTCH1-207ENST00000429896 CRYMQ14894 314 aa12.89□□□□□ -0.35
PTCH1-207ENST00000429896 CEP78Q5JTW2 689 aa12.89□□□□□ -0.35
PTCH1-207ENST00000429896 PIK3R6Q5UE93 754 aa12.89□□□□□ -0.35
PTCH1-207ENST00000429896 CERS6Q6ZMG9 384 aa12.89□□□□□ -0.35
PTCH1-207ENST00000429896 BRSK1Q8TDC3 778 aa12.89□□□□□ -0.35
PTCH1-207ENST00000429896 PEBP4Q96S96 227 aa12.89□□□□□ -0.35
PTCH1-207ENST00000429896 EIF2B3Q9NR50 452 aaKnown RBP12.89□□□□□ -0.35
PTCH1-207ENST00000429896 TPP1O14773 563 aa12.89□□□□□ -0.35
PTCH1-207ENST00000429896 TM9SF1O15321 606 aa12.89□□□□□ -0.35
PTCH1-207ENST00000429896 HNRNPCP07910 306 aaKnown RBP eCLIP12.89□□□□□ -0.35
PTCH1-207ENST00000429896 RPA3P35244 121 aaPredicted RBP12.89□□□□□ -0.35
PTCH1-207ENST00000429896 KLHDC10Q6PID8 442 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms