RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 TBATAQ96M53 351 aa14.19□□□□□ -0.14
SKA1-202ENST00000398452 FCRL3Q96P31 734 aaPredicted RBP14.19□□□□□ -0.14
SKA1-202ENST00000398452 TRIM56Q9BRZ2 755 aaKnown RBP14.19□□□□□ -0.14
SKA1-202ENST00000398452 IER2Q9BTL4 223 aa14.19□□□□□ -0.14
SKA1-202ENST00000398452 CDH19Q9H159 772 aa14.19□□□□□ -0.14
SKA1-202ENST00000398452 CATSPERZQ9NTU4 200 aa14.19□□□□□ -0.14
SKA1-202ENST00000398452 MOCS1Q9NZB8 636 aa14.19□□□□□ -0.14
SKA1-202ENST00000398452 VPS18Q9P253 973 aa14.19□□□□□ -0.14
SKA1-202ENST00000398452 FETUBQ9UGM5 382 aa14.19□□□□□ -0.14
SKA1-202ENST00000398452 SLC2A6Q9UGQ3 507 aa14.19□□□□□ -0.14
SKA1-202ENST00000398452 RABGEF1Q9UJ41 708 aa14.19□□□□□ -0.14
SKA1-202ENST00000398452 VPS9D1Q9Y2B5 631 aa14.19□□□□□ -0.14
SKA1-202ENST00000398452 SIT1Q9Y3P8 196 aa14.19□□□□□ -0.14
SKA1-202ENST00000398452 KCTD3Q9Y597 815 aa14.19□□□□□ -0.14
SKA1-202ENST00000398452 MUC22E2RYF6 1773 aaPredicted RBP14.19□□□□□ -0.14
SKA1-202ENST00000398452 IQANK1A0A1B0GTG1 560 aa14.18□□□□□ -0.14
SKA1-202ENST00000398452 RGSL1A5PLK6 1076 aa14.18□□□□□ -0.14
SKA1-202ENST00000398452 AURKAO14965 403 aa14.18□□□□□ -0.14
SKA1-202ENST00000398452 RGS16O15492 202 aaPredicted RBP14.18□□□□□ -0.14
SKA1-202ENST00000398452 CDH16O75309 829 aa14.18□□□□□ -0.14
SKA1-202ENST00000398452 KRT38O76015 456 aa14.18□□□□□ -0.14
SKA1-202ENST00000398452 MC4RP32245 332 aa14.18□□□□□ -0.14
SKA1-202ENST00000398452 MMP12P39900 470 aa14.18□□□□□ -0.14
SKA1-202ENST00000398452 SERPINB9P50453 376 aa14.18□□□□□ -0.14
SKA1-202ENST00000398452 SEMG2Q02383 582 aa14.18□□□□□ -0.14
SKA1-202ENST00000398452 CWF19L1Q69YN2 538 aaKnown RBP14.18□□□□□ -0.14
SKA1-202ENST00000398452 NEPROQ6NW34 567 aa14.18□□□□□ -0.14
SKA1-202ENST00000398452 TRMT10BQ6PF06 316 aaKnown RBP14.18□□□□□ -0.14
SKA1-202ENST00000398452 Q6ZS52 159 aa14.18□□□□□ -0.14
SKA1-202ENST00000398452 USP30Q70CQ3 517 aa14.18□□□□□ -0.14
SKA1-202ENST00000398452 TSPAN33Q86UF1 283 aa14.18□□□□□ -0.14
SKA1-202ENST00000398452 SLC26A11Q86WA9 606 aa14.18□□□□□ -0.14
SKA1-202ENST00000398452 RAVER1Q8IY67 606 aaKnown RBP14.18□□□□□ -0.14
SKA1-202ENST00000398452 CBARPQ8N350 705 aaPredicted RBP14.18□□□□□ -0.14
SKA1-202ENST00000398452 PJA1Q8NG27 643 aa14.18□□□□□ -0.14
SKA1-202ENST00000398452 OR4L1Q8NH43 312 aa14.18□□□□□ -0.14
SKA1-202ENST00000398452 OR2W6PQ8NHA6 318 aa14.18□□□□□ -0.14
SKA1-202ENST00000398452 OR14C36Q8NHC7 312 aa14.18□□□□□ -0.14
SKA1-202ENST00000398452 ZNF778Q96MU6 729 aa14.18□□□□□ -0.14
SKA1-202ENST00000398452 SMIM14Q96QK8 99 aa14.18□□□□□ -0.14
SKA1-202ENST00000398452 CPNE1Q99829 537 aa14.18□□□□□ -0.14
SKA1-202ENST00000398452 WRAP53Q9BUR4 548 aaKnown RBP14.18□□□□□ -0.14
SKA1-202ENST00000398452 MKRN2Q9H000 416 aaKnown RBP14.18□□□□□ -0.14
SKA1-202ENST00000398452 EPB41L4BQ9H329 900 aa14.18□□□□□ -0.14
SKA1-202ENST00000398452 IL17CQ9P0M4 197 aa14.18□□□□□ -0.14
SKA1-202ENST00000398452 PSMC3IPQ9P2W1 217 aaPredicted RBP14.18□□□□□ -0.14
SKA1-202ENST00000398452 FKBPLQ9UIM3 349 aa14.18□□□□□ -0.14
SKA1-202ENST00000398452 FZD4Q9ULV1 537 aa14.18□□□□□ -0.14
SKA1-202ENST00000398452 ANKRD36A6QL64 1941 aa14.17□□□□□ -0.14
SKA1-202ENST00000398452 GLYATL1P3A0A0U1RQE8 302 aa14.17□□□□□ -0.14
SKA1-202ENST00000398452 FAM159BA6NKW6 160 aa14.17□□□□□ -0.14
SKA1-202ENST00000398452 SHISA7A6NL88 538 aa14.17□□□□□ -0.14
SKA1-202ENST00000398452 MAP2K7O14733 419 aa14.17□□□□□ -0.14
SKA1-202ENST00000398452 WNT9AO14904 365 aa14.17□□□□□ -0.14
SKA1-202ENST00000398452 CD3EAPO15446 510 aaKnown RBP14.17□□□□□ -0.14
SKA1-202ENST00000398452 AP1G1O43747 822 aa14.17□□□□□ -0.14
SKA1-202ENST00000398452 GFRA3O60609 400 aa14.17□□□□□ -0.14
SKA1-202ENST00000398452 TCEA3O75764 348 aa14.17□□□□□ -0.14
SKA1-202ENST00000398452 KRT37O76014 449 aa14.17□□□□□ -0.14
SKA1-202ENST00000398452 GOT2P00505 430 aaKnown RBP14.17□□□□□ -0.14
SKA1-202ENST00000398452 SHBGP04278 402 aa14.17□□□□□ -0.14
SKA1-202ENST00000398452 GP5P40197 560 aa14.17□□□□□ -0.14
SKA1-202ENST00000398452 SLCO1A2P46721 670 aa14.17□□□□□ -0.14
SKA1-202ENST00000398452 CLCN5P51795 746 aa14.17□□□□□ -0.14
SKA1-202ENST00000398452 STC1P52823 247 aa14.17□□□□□ -0.14
SKA1-202ENST00000398452 ACVR1Q04771 509 aa14.17□□□□□ -0.14
SKA1-202ENST00000398452 ITGA9Q13797 1035 aa14.17□□□□□ -0.14
SKA1-202ENST00000398452 SMAD1Q15797 465 aaKnown RBP14.17□□□□□ -0.14
SKA1-202ENST00000398452 TMEM52BQ4KMG9 183 aa14.17□□□□□ -0.14
SKA1-202ENST00000398452 ZNF470Q6ECI4 717 aa14.17□□□□□ -0.14
SKA1-202ENST00000398452 KIAA0408Q6ZU52 694 aa14.17□□□□□ -0.14
SKA1-202ENST00000398452 MARK2Q7KZI7 788 aaKnown RBP14.17□□□□□ -0.14
SKA1-202ENST00000398452 TAS2R42Q7RTR8 314 aa14.17□□□□□ -0.14
SKA1-202ENST00000398452 NRSN1Q8IZ57 195 aa14.17□□□□□ -0.14
SKA1-202ENST00000398452 SPEM1Q8N4L4 309 aa14.17□□□□□ -0.14
SKA1-202ENST00000398452 OR13J1Q8NGT2 312 aa14.17□□□□□ -0.14
SKA1-202ENST00000398452 MRGPRX1Q96LB2 322 aa14.17□□□□□ -0.14
SKA1-202ENST00000398452 PLEKHG4BQ96PX9 1271 aa14.17□□□□□ -0.14
SKA1-202ENST00000398452 PAFAH2Q99487 392 aa14.17□□□□□ -0.14
SKA1-202ENST00000398452 TMEM109Q9BVC6 243 aa14.17□□□□□ -0.14
SKA1-202ENST00000398452 C1QTNF7Q9BXJ2 289 aa14.17□□□□□ -0.14
SKA1-202ENST00000398452 FAM83DQ9H4H8 585 aa14.17□□□□□ -0.14
SKA1-202ENST00000398452 CRLS1Q9UJA2 301 aa14.17□□□□□ -0.14
SKA1-202ENST00000398452 MTF2Q9Y483 593 aaPredicted RBP14.17□□□□□ -0.14
SKA1-202ENST00000398452 FADS3Q9Y5Q0 445 aa14.17□□□□□ -0.14
SKA1-202ENST00000398452 RIF1Q5UIP0 2472 aaKnown RBP14.16□□□□□ -0.14
SKA1-202ENST00000398452 CCDC162PA2VCL2 907 aa14.16□□□□□ -0.14
SKA1-202ENST00000398452 LRRC72A6NJI9 287 aa14.16□□□□□ -0.14
SKA1-202ENST00000398452 GOLGA8KD6RF30 607 aa14.16□□□□□ -0.14
SKA1-202ENST00000398452 GOLGA8TH3BQL2 631 aa14.16□□□□□ -0.14
SKA1-202ENST00000398452 H7C0S8 307 aa14.16□□□□□ -0.14
SKA1-202ENST00000398452 PLK4O00444 970 aa14.16□□□□□ -0.14
SKA1-202ENST00000398452 AREL1O15033 823 aa14.16□□□□□ -0.14
SKA1-202ENST00000398452 ZNF217O75362 1048 aa14.16□□□□□ -0.14
SKA1-202ENST00000398452 NDUFS3O75489 264 aa14.16□□□□□ -0.14
SKA1-202ENST00000398452 TM7SF2O76062 418 aa14.16□□□□□ -0.14
SKA1-202ENST00000398452 PRAMEF1O95521 474 aa14.16□□□□□ -0.14
SKA1-202ENST00000398452 C1SP09871 688 aa14.16□□□□□ -0.14
SKA1-202ENST00000398452 KRT15P19012 456 aa14.16□□□□□ -0.14
SKA1-202ENST00000398452 NDUFV2P19404 249 aa14.16□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms