RNA–Protein interactions for RNA: ENST00000380871.4

NKX3-1-201, Transcript of NK3 homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NKX3-1, Length 3,271 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-201ENST00000380871 CDK9P50750 372 aaKnown RBP16.24■□□□□ 0.19
NKX3-1-201ENST00000380871 TRAP1Q12931 704 aaKnown RBP16.24■□□□□ 0.19
NKX3-1-201ENST00000380871 TAF10Q12962 218 aa16.24■□□□□ 0.19
NKX3-1-201ENST00000380871 DCTN2Q13561 401 aaKnown RBP16.24■□□□□ 0.19
NKX3-1-201ENST00000380871 MAP7D1Q3KQU3 841 aa16.24■□□□□ 0.19
NKX3-1-201ENST00000380871 TBCELQ5QJ74 424 aa16.24■□□□□ 0.19
NKX3-1-201ENST00000380871 ISCA2Q86U28 154 aa16.24■□□□□ 0.19
NKX3-1-201ENST00000380871 LINC01599Q8WXQ3 324 aa16.24■□□□□ 0.19
NKX3-1-201ENST00000380871 UHRF1Q96T88 793 aaPredicted RBP16.24■□□□□ 0.19
NKX3-1-201ENST00000380871 TIMMDC1Q9NPL8 285 aa16.24■□□□□ 0.19
NKX3-1-201ENST00000380871 BTRCQ9Y297 605 aa16.24■□□□□ 0.19
NKX3-1-201ENST00000380871 FNDC1Q4ZHG4 1894 aaPredicted RBP16.24■□□□□ 0.19
NKX3-1-201ENST00000380871 TNFRSF10BO14763 440 aa16.24■□□□□ 0.19
NKX3-1-201ENST00000380871 RPL17P18621 184 aaKnown RBP16.24■□□□□ 0.19
NKX3-1-201ENST00000380871 CES1P23141 567 aa16.24■□□□□ 0.19
NKX3-1-201ENST00000380871 UNC50Q53HI1 259 aa16.24■□□□□ 0.19
NKX3-1-201ENST00000380871 ZNF678Q5SXM1 525 aa16.24■□□□□ 0.19
NKX3-1-201ENST00000380871 FAM45BPQ6NSW5 357 aa16.24■□□□□ 0.19
NKX3-1-201ENST00000380871 SLC24A5Q71RS6 500 aa16.24■□□□□ 0.19
NKX3-1-201ENST00000380871 OFCC1Q8IZS5 231 aa16.24■□□□□ 0.19
NKX3-1-201ENST00000380871 FAM45AQ8TCE6 357 aa16.24■□□□□ 0.19
NKX3-1-201ENST00000380871 RAET1EQ8TD07 263 aa16.24■□□□□ 0.19
NKX3-1-201ENST00000380871 TFAP2CQ92754 450 aa16.24■□□□□ 0.19
NKX3-1-201ENST00000380871 FBXL20Q96IG2 436 aa16.24■□□□□ 0.19
NKX3-1-201ENST00000380871 DNAAF2Q9NVR5 837 aaKnown RBP16.24■□□□□ 0.19
NKX3-1-201ENST00000380871 MTHFD1P11586 935 aaKnown RBP16.23■□□□□ 0.19
NKX3-1-201ENST00000380871 DNAJB2P25686 324 aa16.23■□□□□ 0.19
NKX3-1-201ENST00000380871 KPNA2P52292 529 aaKnown RBP16.23■□□□□ 0.19
NKX3-1-201ENST00000380871 SP3Q02447 781 aa16.23■□□□□ 0.19
NKX3-1-201ENST00000380871 DUSP4Q13115 394 aa16.23■□□□□ 0.19
NKX3-1-201ENST00000380871 UGT3A2Q3SY77 523 aa16.23■□□□□ 0.19
NKX3-1-201ENST00000380871 IFNEQ86WN2 208 aa16.23■□□□□ 0.19
NKX3-1-201ENST00000380871 CILP2Q8IUL8 1156 aa16.23■□□□□ 0.19
NKX3-1-201ENST00000380871 CLVS1Q8IUQ0 354 aaPredicted RBP16.23■□□□□ 0.19
NKX3-1-201ENST00000380871 DCP1BQ8IZD4 617 aaKnown RBP16.23■□□□□ 0.19
NKX3-1-201ENST00000380871 DBF4BQ8NFT6 615 aa16.23■□□□□ 0.19
NKX3-1-201ENST00000380871 TOP1MTQ969P6 601 aa16.23■□□□□ 0.19
NKX3-1-201ENST00000380871 HDAC10Q969S8 669 aa16.23■□□□□ 0.19
NKX3-1-201ENST00000380871 SPON2Q9BUD6 331 aa16.23■□□□□ 0.19
NKX3-1-201ENST00000380871 NACA2Q9H009 215 aa16.23■□□□□ 0.19
NKX3-1-201ENST00000380871 CLK4Q9HAZ1 481 aaKnown RBP16.23■□□□□ 0.19
NKX3-1-201ENST00000380871 VWA7Q9Y334 891 aa16.23■□□□□ 0.19
NKX3-1-201ENST00000380871 PIP5K1BO14986 540 aa16.23■□□□□ 0.19
NKX3-1-201ENST00000380871 DNAJB1P25685 340 aa16.23■□□□□ 0.19
NKX3-1-201ENST00000380871 MLLT6P55198 1093 aaPredicted RBP16.23■□□□□ 0.19
NKX3-1-201ENST00000380871 ECT2LQ008S8 904 aa16.23■□□□□ 0.19
NKX3-1-201ENST00000380871 KLHL35Q6PF15 583 aa16.23■□□□□ 0.19
NKX3-1-201ENST00000380871 ERMP1Q7Z2K6 904 aa16.23■□□□□ 0.19
NKX3-1-201ENST00000380871 ZNF598Q86UK7 904 aaKnown RBP16.23■□□□□ 0.19
NKX3-1-201ENST00000380871 ZBTB46Q86UZ6 589 aa16.23■□□□□ 0.19
NKX3-1-201ENST00000380871 IGSF8Q969P0 613 aa16.23■□□□□ 0.19
NKX3-1-201ENST00000380871 UPF3AQ9H1J1 476 aaKnown RBP16.23■□□□□ 0.19
NKX3-1-201ENST00000380871 SMOC2Q9H3U7 446 aa16.23■□□□□ 0.19
NKX3-1-201ENST00000380871 STARD7Q9NQZ5 370 aa16.23■□□□□ 0.19
NKX3-1-201ENST00000380871 PCDHB8Q9UN66 801 aa16.23■□□□□ 0.19
NKX3-1-201ENST00000380871 V9GYQ6 96 aa16.23■□□□□ 0.19
NKX3-1-201ENST00000380871 LEPRP48357 1165 aaKnown RBP16.23■□□□□ 0.19
NKX3-1-201ENST00000380871 POLD2P49005 469 aa16.23■□□□□ 0.19
NKX3-1-201ENST00000380871 PPP4R4Q6NUP7 873 aa16.23■□□□□ 0.19
NKX3-1-201ENST00000380871 KDELC1Q6UW63 502 aa16.23■□□□□ 0.19
NKX3-1-201ENST00000380871 PRSS55Q6UWB4 352 aaPredicted RBP16.23■□□□□ 0.19
NKX3-1-201ENST00000380871 ERI1Q8IV48 349 aaKnown RBP16.23■□□□□ 0.19
NKX3-1-201ENST00000380871 AFAP1L2Q8N4X5 818 aa16.23■□□□□ 0.19
NKX3-1-201ENST00000380871 FAR2Q96K12 515 aa16.23■□□□□ 0.19
NKX3-1-201ENST00000380871 NOL6Q9H6R4 1146 aaKnown RBP16.23■□□□□ 0.19
NKX3-1-201ENST00000380871 POLR3BQ9NW08 1133 aaPredicted RBP16.23■□□□□ 0.19
NKX3-1-201ENST00000380871 TDRKHQ9Y2W6 561 aaKnown RBP16.23■□□□□ 0.19
NKX3-1-201ENST00000380871 SCN10AQ9Y5Y9 1956 aa16.22■□□□□ 0.19
NKX3-1-201ENST00000380871 FXYD1O00168 92 aa16.22■□□□□ 0.19
NKX3-1-201ENST00000380871 PRSS56P0CW18 603 aa16.22■□□□□ 0.19
NKX3-1-201ENST00000380871 IMPDH1P20839 514 aa16.22■□□□□ 0.19
NKX3-1-201ENST00000380871 ENTPD1P49961 510 aa16.22■□□□□ 0.19
NKX3-1-201ENST00000380871 BRMS1LQ5PSV4 323 aa16.22■□□□□ 0.19
NKX3-1-201ENST00000380871 CHST15Q7LFX5 561 aaPredicted RBP16.22■□□□□ 0.19
NKX3-1-201ENST00000380871 DDIASQ8IXT1 998 aa16.22■□□□□ 0.19
NKX3-1-201ENST00000380871 RTL3Q8N8U3 475 aaKnown RBP16.22■□□□□ 0.19
NKX3-1-201ENST00000380871 ANKFN1Q8N957 763 aa16.22■□□□□ 0.19
NKX3-1-201ENST00000380871 EXOC2Q96KP1 924 aa16.22■□□□□ 0.19
NKX3-1-201ENST00000380871 SERPINB11Q96P15 392 aa16.22■□□□□ 0.19
NKX3-1-201ENST00000380871 TCF12Q99081 682 aa16.22■□□□□ 0.19
NKX3-1-201ENST00000380871 CRISPLD1Q9H336 500 aa16.22■□□□□ 0.19
NKX3-1-201ENST00000380871 CCSER2Q9H7U1 834 aa16.22■□□□□ 0.19
NKX3-1-201ENST00000380871 CMTM6Q9NX76 183 aa16.22■□□□□ 0.19
NKX3-1-201ENST00000380871 MARCH2Q9P0N8 246 aa16.22■□□□□ 0.19
NKX3-1-201ENST00000380871 OAZ3Q9UMX2 235 aa16.22■□□□□ 0.19
NKX3-1-201ENST00000380871 USP22Q9UPT9 525 aa16.22■□□□□ 0.19
NKX3-1-201ENST00000380871 PCDHB5Q9Y5E4 795 aa16.22■□□□□ 0.19
NKX3-1-201ENST00000380871 H0YJX3 145 aa16.22■□□□□ 0.19
NKX3-1-201ENST00000380871 UBXN8O00124 270 aa16.22■□□□□ 0.19
NKX3-1-201ENST00000380871 ZNF189O75820 626 aaPredicted RBP16.22■□□□□ 0.19
NKX3-1-201ENST00000380871 IGHA2P01877 340 aa16.22■□□□□ 0.19
NKX3-1-201ENST00000380871 NCK1P16333 377 aa16.22■□□□□ 0.19
NKX3-1-201ENST00000380871 ACVRL1P37023 503 aa16.22■□□□□ 0.19
NKX3-1-201ENST00000380871 STX1BP61266 288 aa16.22■□□□□ 0.19
NKX3-1-201ENST00000380871 ACAP2Q15057 778 aa16.22■□□□□ 0.19
NKX3-1-201ENST00000380871 MON1AQ86VX9 555 aa16.22■□□□□ 0.19
NKX3-1-201ENST00000380871 SLC15A3Q8IY34 581 aa16.22■□□□□ 0.19
NKX3-1-201ENST00000380871 PTGR2Q8N8N7 351 aaPredicted RBP16.22■□□□□ 0.19
NKX3-1-201ENST00000380871 BHMTQ93088 406 aa16.22■□□□□ 0.19
NKX3-1-201ENST00000380871 MYEOVQ96EZ4 313 aa16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms