RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 ETFAP13804 333 aa2.19□□□□□ -2.06
VPS13A-206ENST00000376646 EPHA8P29322 1005 aaPredicted RBP2.19□□□□□ -2.06
VPS13A-206ENST00000376646 RGS2P41220 211 aa2.19□□□□□ -2.06
VPS13A-206ENST00000376646 BLKP51451 505 aa2.19□□□□□ -2.06
VPS13A-206ENST00000376646 EFNB1P98172 346 aa2.19□□□□□ -2.06
VPS13A-206ENST00000376646 TROAPQ12815 778 aa2.19□□□□□ -2.06
VPS13A-206ENST00000376646 FOXD4Q12950 439 aaPredicted RBP2.19□□□□□ -2.06
VPS13A-206ENST00000376646 PTP4A2Q12974 167 aa2.19□□□□□ -2.06
VPS13A-206ENST00000376646 GAGE1Q13065 139 aa2.19□□□□□ -2.06
VPS13A-206ENST00000376646 GAGE4Q13068 117 aa2.19□□□□□ -2.06
VPS13A-206ENST00000376646 TBCEQ15813 527 aaPredicted RBP2.19□□□□□ -2.06
VPS13A-206ENST00000376646 SLC9B1Q4ZJI4 515 aa2.19□□□□□ -2.06
VPS13A-206ENST00000376646 C14orf177Q52M58 125 aa2.19□□□□□ -2.06
VPS13A-206ENST00000376646 MZT2BQ6NZ67 158 aa2.19□□□□□ -2.06
VPS13A-206ENST00000376646 SLC36A4Q6YBV0 504 aa2.19□□□□□ -2.06
VPS13A-206ENST00000376646 MTSS1LQ765P7 747 aa2.19□□□□□ -2.06
VPS13A-206ENST00000376646 TRMT1LQ7Z2T5 733 aaKnown RBP2.19□□□□□ -2.06
VPS13A-206ENST00000376646 DHX40Q8IX18 779 aaKnown RBP2.19□□□□□ -2.06
VPS13A-206ENST00000376646 SLC35F3Q8IY50 421 aa2.19□□□□□ -2.06
VPS13A-206ENST00000376646 DIS3L2Q8IYB7 885 aaKnown RBP2.19□□□□□ -2.06
VPS13A-206ENST00000376646 NFKBIDQ8NI38 313 aa2.19□□□□□ -2.06
VPS13A-206ENST00000376646 ALG14Q96F25 216 aa2.19□□□□□ -2.06
VPS13A-206ENST00000376646 CNGB3Q9NQW8 809 aa2.19□□□□□ -2.06
VPS13A-206ENST00000376646 KRT84Q9NSB2 600 aa2.19□□□□□ -2.06
VPS13A-206ENST00000376646 PPP1R14DQ9NXH3 145 aa2.19□□□□□ -2.06
VPS13A-206ENST00000376646 IL1RAPL1Q9NZN1 696 aa2.19□□□□□ -2.06
VPS13A-206ENST00000376646 TAAR2Q9P1P5 351 aa2.19□□□□□ -2.06
VPS13A-206ENST00000376646 HCN3Q9P1Z3 774 aa2.19□□□□□ -2.06
VPS13A-206ENST00000376646 SWAP70Q9UH65 585 aa2.19□□□□□ -2.06
VPS13A-206ENST00000376646 SARDHQ9UL12 918 aa2.19□□□□□ -2.06
VPS13A-206ENST00000376646 TNFSF14O43557 240 aa2.18□□□□□ -2.06
VPS13A-206ENST00000376646 TMEM63AO94886 807 aa2.18□□□□□ -2.06
VPS13A-206ENST00000376646 NDUFB4O95168 129 aa2.18□□□□□ -2.06
VPS13A-206ENST00000376646 YWHAZP63104 245 aaKnown RBP2.18□□□□□ -2.06
VPS13A-206ENST00000376646 C2orf68Q2NKX9 166 aa2.18□□□□□ -2.06
VPS13A-206ENST00000376646 SERTAD4-AS1Q5TG53 156 aa2.18□□□□□ -2.06
VPS13A-206ENST00000376646 PLA2G4FQ68DD2 849 aa2.18□□□□□ -2.06
VPS13A-206ENST00000376646 ITPRIPL1Q6GPH6 555 aa2.18□□□□□ -2.06
VPS13A-206ENST00000376646 CFAP161Q6P656 301 aa2.18□□□□□ -2.06
VPS13A-206ENST00000376646 INO80CQ6PI98 192 aaPredicted RBP2.18□□□□□ -2.06
VPS13A-206ENST00000376646 GFRALQ6UXV0 394 aa2.18□□□□□ -2.06
VPS13A-206ENST00000376646 TMTC3Q6ZXV5 915 aa2.18□□□□□ -2.06
VPS13A-206ENST00000376646 TMEM219Q86XT9 240 aa2.18□□□□□ -2.06
VPS13A-206ENST00000376646 ZNF34Q8IZ26 560 aa2.18□□□□□ -2.06
VPS13A-206ENST00000376646 LNX1Q8TBB1 728 aaPredicted RBP2.18□□□□□ -2.06
VPS13A-206ENST00000376646 METTL6Q8TCB7 284 aa2.18□□□□□ -2.06
VPS13A-206ENST00000376646 BBS4Q96RK4 519 aa2.18□□□□□ -2.06
VPS13A-206ENST00000376646 SIN3AQ96ST3 1273 aa2.18□□□□□ -2.06
VPS13A-206ENST00000376646 SMYD2Q9NRG4 433 aa2.18□□□□□ -2.06
VPS13A-206ENST00000376646 TBC1D22BQ9NU19 505 aa2.18□□□□□ -2.06
VPS13A-206ENST00000376646 TAS2R10Q9NYW0 307 aa2.18□□□□□ -2.06
VPS13A-206ENST00000376646 KCND2Q9NZV8 630 aa2.18□□□□□ -2.06
VPS13A-206ENST00000376646 FBXO2Q9UK22 296 aaPredicted RBP2.18□□□□□ -2.06
VPS13A-206ENST00000376646 PIAS3Q9Y6X2 628 aa2.18□□□□□ -2.06
VPS13A-206ENST00000376646 TEX13CA0A0J9YWL9 993 aa2.17□□□□□ -2.06
VPS13A-206ENST00000376646 FSD2A1L4K1 749 aa2.17□□□□□ -2.06
VPS13A-206ENST00000376646 PI4KAP2A4QPH2 592 aa2.17□□□□□ -2.06
VPS13A-206ENST00000376646 TGFB1I1O43294 461 aa2.17□□□□□ -2.06
VPS13A-206ENST00000376646 ZBED4O75132 1171 aa2.17□□□□□ -2.06
VPS13A-206ENST00000376646 TACC1O75410 805 aa2.17□□□□□ -2.06
VPS13A-206ENST00000376646 RFPL2O75678 378 aa2.17□□□□□ -2.06
VPS13A-206ENST00000376646 APOHP02749 345 aaPredicted RBP2.17□□□□□ -2.06
VPS13A-206ENST00000376646 SRCP12931 536 aa2.17□□□□□ -2.06
VPS13A-206ENST00000376646 COX7A2P14406 83 aa2.17□□□□□ -2.06
VPS13A-206ENST00000376646 PTPN2P17706 415 aa2.17□□□□□ -2.06
VPS13A-206ENST00000376646 CHMP24386 653 aa2.17□□□□□ -2.06
VPS13A-206ENST00000376646 MAPK4P31152 587 aa2.17□□□□□ -2.06
VPS13A-206ENST00000376646 ICAM3P32942 547 aa2.17□□□□□ -2.06
VPS13A-206ENST00000376646 NEXNQ0ZGT2 675 aa2.17□□□□□ -2.06
VPS13A-206ENST00000376646 VEPH1Q14D04 833 aa2.17□□□□□ -2.06
VPS13A-206ENST00000376646 SGO1Q5FBB7 561 aa2.17□□□□□ -2.06
VPS13A-206ENST00000376646 IRAK1BP1Q5VVH5 260 aa2.17□□□□□ -2.06
VPS13A-206ENST00000376646 PMS2CLQ68D20 193 aa2.17□□□□□ -2.06
VPS13A-206ENST00000376646 ADAM5Q6NVV9 412 aa2.17□□□□□ -2.06
VPS13A-206ENST00000376646 CCNI2Q6ZMN8 369 aaPredicted RBP2.17□□□□□ -2.06
VPS13A-206ENST00000376646 CHERPQ8IWX8 916 aaKnown RBP2.17□□□□□ -2.06
VPS13A-206ENST00000376646 NOC3LQ8WTT2 800 aaKnown RBP2.17□□□□□ -2.06
VPS13A-206ENST00000376646 KLHL15Q96M94 604 aa2.17□□□□□ -2.06
VPS13A-206ENST00000376646 NR1H4Q96RI1 486 aaPredicted RBP2.17□□□□□ -2.06
VPS13A-206ENST00000376646 MMTAG2Q9BU76 263 aaKnown RBP2.17□□□□□ -2.06
VPS13A-206ENST00000376646 TRMT61BQ9BVS5 477 aaKnown RBP2.17□□□□□ -2.06
VPS13A-206ENST00000376646 TKTL2Q9H0I9 626 aa2.17□□□□□ -2.06
VPS13A-206ENST00000376646 FBRSL1Q9HCM7 1045 aaKnown RBP2.17□□□□□ -2.06
VPS13A-206ENST00000376646 LSM4Q9Y4Z0 139 aaKnown RBP2.17□□□□□ -2.06
VPS13A-206ENST00000376646 SCINQ9Y6U3 715 aa2.17□□□□□ -2.06
VPS13A-206ENST00000376646 KDM3AQ9Y4C1 1321 aa2.17□□□□□ -2.06
VPS13A-206ENST00000376646 TDRD9Q8NDG6 1382 aaKnown RBP2.17□□□□□ -2.06
VPS13A-206ENST00000376646 RUSC2Q8N2Y8 1516 aa2.17□□□□□ -2.06
VPS13A-206ENST00000376646 NPIPB15A6NHN6 443 aaPredicted RBP2.17□□□□□ -2.06
VPS13A-206ENST00000376646 F5H0A9 414 aaPredicted RBP2.17□□□□□ -2.06
VPS13A-206ENST00000376646 SNAP23O00161 211 aa2.17□□□□□ -2.06
VPS13A-206ENST00000376646 FGF17O60258 216 aa2.17□□□□□ -2.06
VPS13A-206ENST00000376646 DOK2O60496 412 aa2.17□□□□□ -2.06
VPS13A-206ENST00000376646 GFPT2O94808 682 aa2.17□□□□□ -2.06
VPS13A-206ENST00000376646 GALTP07902 379 aa2.17□□□□□ -2.06
VPS13A-206ENST00000376646 SPARCP09486 303 aa2.17□□□□□ -2.06
VPS13A-206ENST00000376646 HSPA1AP0DMV8 641 aaKnown RBP2.17□□□□□ -2.06
VPS13A-206ENST00000376646 HSPA1BP0DMV9 641 aaKnown RBP2.17□□□□□ -2.06
VPS13A-206ENST00000376646 PCNAP12004 261 aa2.17□□□□□ -2.06
VPS13A-206ENST00000376646 TMPOP42166 694 aaKnown RBP2.17□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms