RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 NCKAP1Q9Y2A7 1128 aa9.19□□□□□ -0.94
USP4-202ENST00000351842 TMEM98Q9Y2Y6 226 aa9.19□□□□□ -0.94
USP4-202ENST00000351842 SLCO1B1Q9Y6L6 691 aa9.19□□□□□ -0.94
USP4-202ENST00000351842 FREM2Q5SZK8 3169 aa9.19□□□□□ -0.94
USP4-202ENST00000351842 CHURC1-FNTBB4DL54 471 aa9.19□□□□□ -0.94
USP4-202ENST00000351842 TOP3BO95985 862 aaKnown RBP9.19□□□□□ -0.94
USP4-202ENST00000351842 BPIP17213 487 aa9.19□□□□□ -0.94
USP4-202ENST00000351842 ADRA1DP25100 572 aa9.19□□□□□ -0.94
USP4-202ENST00000351842 FNTBP49356 437 aa9.19□□□□□ -0.94
USP4-202ENST00000351842 PTSQ03393 145 aa9.19□□□□□ -0.94
USP4-202ENST00000351842 PRKCQQ04759 706 aa9.19□□□□□ -0.94
USP4-202ENST00000351842 LRRC32Q14392 662 aa9.19□□□□□ -0.94
USP4-202ENST00000351842 SETMARQ53H47 684 aaPredicted RBP9.19□□□□□ -0.94
USP4-202ENST00000351842 TSTD2Q5T7W7 516 aa9.19□□□□□ -0.94
USP4-202ENST00000351842 BRAT1Q6PJG6 821 aa9.19□□□□□ -0.94
USP4-202ENST00000351842 CRTC3Q6UUV7 619 aa9.19□□□□□ -0.94
USP4-202ENST00000351842 PRR23BQ6ZRT6 265 aa9.19□□□□□ -0.94
USP4-202ENST00000351842 TRMT11Q7Z4G4 463 aaKnown RBP9.19□□□□□ -0.94
USP4-202ENST00000351842 STRA8Q7Z7C7 330 aa9.19□□□□□ -0.94
USP4-202ENST00000351842 METTL3Q86U44 580 aaKnown RBP9.19□□□□□ -0.94
USP4-202ENST00000351842 UBALD2Q8IYN6 164 aa9.19□□□□□ -0.94
USP4-202ENST00000351842 BRSK1Q8TDC3 778 aa9.19□□□□□ -0.94
USP4-202ENST00000351842 FUBP1Q96AE4 644 aaKnown RBP9.19□□□□□ -0.94
USP4-202ENST00000351842 SCRN2Q96FV2 425 aa9.19□□□□□ -0.94
USP4-202ENST00000351842 CERS2Q96G23 380 aa9.19□□□□□ -0.94
USP4-202ENST00000351842 BTBD1Q9H0C5 482 aa9.19□□□□□ -0.94
USP4-202ENST00000351842 PABPC3Q9H361 631 aaKnown RBP9.19□□□□□ -0.94
USP4-202ENST00000351842 C12orf65Q9H3J6 166 aaKnown RBP9.19□□□□□ -0.94
USP4-202ENST00000351842 AASDHPPTQ9NRN7 309 aa9.19□□□□□ -0.94
USP4-202ENST00000351842 PIKFYVEQ9Y2I7 2098 aa9.19□□□□□ -0.94
USP4-202ENST00000351842 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP9.18□□□□□ -0.94
USP4-202ENST00000351842 TRIM16O95361 564 aa9.18□□□□□ -0.94
USP4-202ENST00000351842 PGAM1P18669 254 aa9.18□□□□□ -0.94
USP4-202ENST00000351842 TNFRSF8P28908 595 aa9.18□□□□□ -0.94
USP4-202ENST00000351842 FMO4P31512 558 aa9.18□□□□□ -0.94
USP4-202ENST00000351842 GRIA4P48058 902 aa9.18□□□□□ -0.94
USP4-202ENST00000351842 MRPS21P82921 87 aaKnown RBP9.18□□□□□ -0.94
USP4-202ENST00000351842 CDK16Q00536 496 aa9.18□□□□□ -0.94
USP4-202ENST00000351842 PDE1BQ01064 536 aa9.18□□□□□ -0.94
USP4-202ENST00000351842 RPL6Q02878 288 aaKnown RBP9.18□□□□□ -0.94
USP4-202ENST00000351842 CAMK2GQ13555 558 aaPredicted RBP9.18□□□□□ -0.94
USP4-202ENST00000351842 RNF43Q68DV7 783 aa9.18□□□□□ -0.94
USP4-202ENST00000351842 NEPROQ6NW34 567 aa9.18□□□□□ -0.94
USP4-202ENST00000351842 C4orf22Q6V702 233 aa9.18□□□□□ -0.94
USP4-202ENST00000351842 C4orf33Q8N1A6 199 aa9.18□□□□□ -0.94
USP4-202ENST00000351842 PLA2G15Q8NCC3 412 aa9.18□□□□□ -0.94
USP4-202ENST00000351842 OR13J1Q8NGT2 312 aa9.18□□□□□ -0.94
USP4-202ENST00000351842 MGARPQ8TDB4 240 aa9.18□□□□□ -0.94
USP4-202ENST00000351842 SEC14L1Q92503 715 aa9.18□□□□□ -0.94
USP4-202ENST00000351842 CDKN2AIPNLQ96HQ2 116 aa9.18□□□□□ -0.94
USP4-202ENST00000351842 MYCBPQ99417 103 aaPredicted RBP9.18□□□□□ -0.94
USP4-202ENST00000351842 PHTF1Q9UMS5 762 aa9.18□□□□□ -0.94
USP4-202ENST00000351842 STARD13Q9Y3M8 1113 aa9.18□□□□□ -0.94
USP4-202ENST00000351842 TMEM221A6NGB7 291 aa9.18□□□□□ -0.94
USP4-202ENST00000351842 CAPN8A6NHC0 703 aa9.18□□□□□ -0.94
USP4-202ENST00000351842 M0R296 226 aa9.18□□□□□ -0.94
USP4-202ENST00000351842 ALOX15BO15296 676 aa9.18□□□□□ -0.94
USP4-202ENST00000351842 PSMD3O43242 534 aa9.18□□□□□ -0.94
USP4-202ENST00000351842 HTRA2O43464 458 aaPredicted RBP9.18□□□□□ -0.94
USP4-202ENST00000351842 SOCS5O75159 536 aa9.18□□□□□ -0.94
USP4-202ENST00000351842 NDUFS2O75306 463 aa9.18□□□□□ -0.94
USP4-202ENST00000351842 ATXN8OSP0DMR3 200 aa9.18□□□□□ -0.94
USP4-202ENST00000351842 MSH2P43246 934 aa9.18□□□□□ -0.94
USP4-202ENST00000351842 GPR1P46091 355 aa9.18□□□□□ -0.94
USP4-202ENST00000351842 PDE1CQ14123 709 aaPredicted RBP9.18□□□□□ -0.94
USP4-202ENST00000351842 SEPT7Q16181 437 aaKnown RBP9.18□□□□□ -0.94
USP4-202ENST00000351842 ATP13A5Q4VNC0 1218 aa9.18□□□□□ -0.94
USP4-202ENST00000351842 FASTKD1Q53R41 847 aaKnown RBP9.18□□□□□ -0.94
USP4-202ENST00000351842 AGBL4Q5VU57 503 aa9.18□□□□□ -0.94
USP4-202ENST00000351842 RAPH1Q70E73 1250 aa9.18□□□□□ -0.94
USP4-202ENST00000351842 CMC1Q7Z7K0 106 aa9.18□□□□□ -0.94
USP4-202ENST00000351842 TAX1BP1Q86VP1 789 aa9.18□□□□□ -0.94
USP4-202ENST00000351842 MCUQ8NE86 351 aa9.18□□□□□ -0.94
USP4-202ENST00000351842 ACVR1CQ8NER5 493 aa9.18□□□□□ -0.94
USP4-202ENST00000351842 GSDMBQ8TAX9 411 aa9.18□□□□□ -0.94
USP4-202ENST00000351842 EXT2Q93063 718 aa9.18□□□□□ -0.94
USP4-202ENST00000351842 SGF29Q96ES7 293 aa9.18□□□□□ -0.94
USP4-202ENST00000351842 ZNF641Q96N77 438 aaPredicted RBP9.18□□□□□ -0.94
USP4-202ENST00000351842 PAIP2Q9BPZ3 127 aaKnown RBP9.18□□□□□ -0.94
USP4-202ENST00000351842 SLC13A1Q9BZW2 595 aa9.18□□□□□ -0.94
USP4-202ENST00000351842 RSPH9Q9H1X1 276 aaPredicted RBP9.18□□□□□ -0.94
USP4-202ENST00000351842 PRM3Q9NNZ6 103 aa9.18□□□□□ -0.94
USP4-202ENST00000351842 IL26Q9NPH9 171 aa9.18□□□□□ -0.94
USP4-202ENST00000351842 SLC39A10Q9ULF5 831 aa9.18□□□□□ -0.94
USP4-202ENST00000351842 GLYATL1P3A0A0U1RQE8 302 aa9.18□□□□□ -0.94
USP4-202ENST00000351842 C19orf67A6NJJ6 358 aa9.18□□□□□ -0.94
USP4-202ENST00000351842 PHGDHO43175 533 aaKnown RBP9.18□□□□□ -0.94
USP4-202ENST00000351842 LAMTOR5O43504 91 aa9.18□□□□□ -0.94
USP4-202ENST00000351842 SLC25A14O95258 325 aaPredicted RBP9.18□□□□□ -0.94
USP4-202ENST00000351842 C1SP09871 688 aa9.18□□□□□ -0.94
USP4-202ENST00000351842 ITGB7P26010 798 aa9.18□□□□□ -0.94
USP4-202ENST00000351842 PHBP35232 272 aa9.18□□□□□ -0.94
USP4-202ENST00000351842 SLC1A2P43004 574 aa9.18□□□□□ -0.94
USP4-202ENST00000351842 POLD2P49005 469 aa9.18□□□□□ -0.94
USP4-202ENST00000351842 NPY2RP49146 381 aa9.18□□□□□ -0.94
USP4-202ENST00000351842 ADPRHP54922 357 aa9.18□□□□□ -0.94
USP4-202ENST00000351842 TAS2R38P59533 333 aa9.18□□□□□ -0.94
USP4-202ENST00000351842 SIGLEC14Q08ET2 396 aa9.18□□□□□ -0.94
USP4-202ENST00000351842 PIP5KL1Q5T9C9 394 aa9.18□□□□□ -0.94
USP4-202ENST00000351842 CNSTQ6PJW8 725 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms