RNA–Protein interactions for RNA: ENST00000347401.7

COL6A3-202, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,625 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-202ENST00000347401 CLPXO76031 633 aa13.29□□□□□ -0.28
COL6A3-202ENST00000347401 BPGMP07738 259 aa13.29□□□□□ -0.28
COL6A3-202ENST00000347401 TCF7P36402 384 aaPredicted RBP13.29□□□□□ -0.28
COL6A3-202ENST00000347401 BCL2L1Q07817 233 aa13.29□□□□□ -0.28
COL6A3-202ENST00000347401 MKRN4PQ13434 485 aaPredicted RBP13.29□□□□□ -0.28
COL6A3-202ENST00000347401 ATP13A3Q9H7F0 1226 aa13.29□□□□□ -0.28
COL6A3-202ENST00000347401 CALML5Q9NZT1 146 aa13.29□□□□□ -0.28
COL6A3-202ENST00000347401 DAGLAQ9Y4D2 1042 aa13.29□□□□□ -0.28
COL6A3-202ENST00000347401 ZNF780BQ9Y6R6 833 aa13.29□□□□□ -0.28
COL6A3-202ENST00000347401 KANTRA0A1W2PQU2 76 aa13.29□□□□□ -0.28
COL6A3-202ENST00000347401 CD2P06729 351 aa13.29□□□□□ -0.28
COL6A3-202ENST00000347401 GRIA1P42261 906 aa13.29□□□□□ -0.28
COL6A3-202ENST00000347401 LIPEQ05469 1076 aa13.29□□□□□ -0.28
COL6A3-202ENST00000347401 COLGALT2Q8IYK4 626 aa13.29□□□□□ -0.28
COL6A3-202ENST00000347401 C1GALT1C1Q96EU7 318 aa13.29□□□□□ -0.28
COL6A3-202ENST00000347401 PCDHB1Q9Y5F3 818 aa13.29□□□□□ -0.28
COL6A3-202ENST00000347401 TCRBV9S1A1TA0A576 114 aa13.29□□□□□ -0.28
COL6A3-202ENST00000347401 ELOVL7A1L3X0 281 aa13.29□□□□□ -0.28
COL6A3-202ENST00000347401 PARNO95453 639 aaKnown RBP13.29□□□□□ -0.28
COL6A3-202ENST00000347401 RB1P06400 928 aa13.29□□□□□ -0.28
COL6A3-202ENST00000347401 GALK1P51570 392 aa13.29□□□□□ -0.28
COL6A3-202ENST00000347401 GJB7Q6PEY0 223 aa13.29□□□□□ -0.28
COL6A3-202ENST00000347401 TIFAQ96CG3 184 aa13.29□□□□□ -0.28
COL6A3-202ENST00000347401 NXNL1Q96CM4 212 aa13.29□□□□□ -0.28
COL6A3-202ENST00000347401 GJB6O95452 261 aa13.29□□□□□ -0.28
COL6A3-202ENST00000347401 CKMP06732 381 aa13.29□□□□□ -0.28
COL6A3-202ENST00000347401 C7P10643 843 aa13.29□□□□□ -0.28
COL6A3-202ENST00000347401 SMARCB1Q12824 385 aa13.29□□□□□ -0.28
COL6A3-202ENST00000347401 CPTPQ5TA50 214 aa13.29□□□□□ -0.28
COL6A3-202ENST00000347401 LRRC69Q6ZNQ3 347 aa13.29□□□□□ -0.28
COL6A3-202ENST00000347401 ZNF572Q7Z3I7 529 aaPredicted RBP13.29□□□□□ -0.28
COL6A3-202ENST00000347401 BRSK2Q8IWQ3 736 aa13.29□□□□□ -0.28
COL6A3-202ENST00000347401 SLC44A1Q8WWI5 657 aa13.29□□□□□ -0.28
COL6A3-202ENST00000347401 UFD1Q92890 307 aa13.29□□□□□ -0.28
COL6A3-202ENST00000347401 WNT8BQ93098 351 aa13.29□□□□□ -0.28
COL6A3-202ENST00000347401 SENP2Q9HC62 589 aa13.29□□□□□ -0.28
COL6A3-202ENST00000347401 GSTT2P0CG29 244 aa13.29□□□□□ -0.28
COL6A3-202ENST00000347401 TUBP50607 506 aa13.29□□□□□ -0.28
COL6A3-202ENST00000347401 SNRPD1P62314 119 aaKnown RBP13.29□□□□□ -0.28
COL6A3-202ENST00000347401 ATXN7L2Q5T6C5 722 aaPredicted RBP13.29□□□□□ -0.28
COL6A3-202ENST00000347401 TAPT1Q6NXT6 567 aa13.29□□□□□ -0.28
COL6A3-202ENST00000347401 DNAJC14Q6Y2X3 702 aaPredicted RBP13.29□□□□□ -0.28
COL6A3-202ENST00000347401 RDH12Q96NR8 316 aa13.29□□□□□ -0.28
COL6A3-202ENST00000347401 MRPS33Q9Y291 106 aaKnown RBP13.29□□□□□ -0.28
COL6A3-202ENST00000347401 A0A1B0GVC2 190 aa13.28□□□□□ -0.28
COL6A3-202ENST00000347401 FAM25EA8MYX2 175 aa13.28□□□□□ -0.28
COL6A3-202ENST00000347401 ATP6V1G1O75348 118 aa13.28□□□□□ -0.28
COL6A3-202ENST00000347401 FGBP02675 491 aa13.28□□□□□ -0.28
COL6A3-202ENST00000347401 ACSL1P33121 698 aa13.28□□□□□ -0.28
COL6A3-202ENST00000347401 UBAP2LQ14157 1087 aaKnown RBP13.28□□□□□ -0.28
COL6A3-202ENST00000347401 FNBP1LQ5T0N5 605 aa13.28□□□□□ -0.28
COL6A3-202ENST00000347401 RAB11FIP2Q7L804 512 aa13.28□□□□□ -0.28
COL6A3-202ENST00000347401 HIST2H2ABQ8IUE6 130 aaPredicted RBP13.28□□□□□ -0.28
COL6A3-202ENST00000347401 SLC4A11Q8NBS3 891 aa13.28□□□□□ -0.28
COL6A3-202ENST00000347401 FAM84AQ96KN4 292 aa13.28□□□□□ -0.28
COL6A3-202ENST00000347401 OR2B2Q9GZK3 357 aa13.28□□□□□ -0.28
COL6A3-202ENST00000347401 XPR1Q9UBH6 696 aa13.28□□□□□ -0.28
COL6A3-202ENST00000347401 TBC1D24Q9ULP9 559 aa13.28□□□□□ -0.28
COL6A3-202ENST00000347401 FAM205CA6NFA0 338 aa13.28□□□□□ -0.28
COL6A3-202ENST00000347401 EPCAMP16422 314 aa13.28□□□□□ -0.28
COL6A3-202ENST00000347401 SLC7A1P30825 629 aa13.28□□□□□ -0.28
COL6A3-202ENST00000347401 TUFMP49411 452 aaKnown RBP13.28□□□□□ -0.28
COL6A3-202ENST00000347401 HMGCS2P54868 508 aa13.28□□□□□ -0.28
COL6A3-202ENST00000347401 CCDC28AQ8IWP9 274 aa13.28□□□□□ -0.28
COL6A3-202ENST00000347401 ZNF567Q8N184 647 aa13.28□□□□□ -0.28
COL6A3-202ENST00000347401 PHB2Q99623 299 aa13.28□□□□□ -0.28
COL6A3-202ENST00000347401 ALG9Q9H6U8 611 aa13.28□□□□□ -0.28
COL6A3-202ENST00000347401 TMEM134Q9H6X4 195 aa13.28□□□□□ -0.28
COL6A3-202ENST00000347401 ABT1Q9ULW3 272 aaKnown RBP13.28□□□□□ -0.28
COL6A3-202ENST00000347401 PCDHGB2Q9Y5G2 931 aa13.28□□□□□ -0.28
COL6A3-202ENST00000347401 EFCAB9A8MZ26 197 aa13.28□□□□□ -0.28
COL6A3-202ENST00000347401 KCNK1O00180 336 aa13.28□□□□□ -0.28
COL6A3-202ENST00000347401 ZNF234Q14588 700 aa13.28□□□□□ -0.28
COL6A3-202ENST00000347401 PAPSS2O95340 614 aaPredicted RBP13.28□□□□□ -0.28
COL6A3-202ENST00000347401 RTP1P59025 263 aa13.28□□□□□ -0.28
COL6A3-202ENST00000347401 CNPY1Q3B7I2 92 aa13.28□□□□□ -0.28
COL6A3-202ENST00000347401 TRMT11Q7Z4G4 463 aaKnown RBP13.28□□□□□ -0.28
COL6A3-202ENST00000347401 COMMD4Q9H0A8 199 aa13.28□□□□□ -0.28
COL6A3-202ENST00000347401 C3orf14Q9HBI5 128 aa13.28□□□□□ -0.28
COL6A3-202ENST00000347401 AGO4Q9HCK5 861 aaKnown RBP13.28□□□□□ -0.28
COL6A3-202ENST00000347401 PCDHGC3Q9UN70 934 aa13.28□□□□□ -0.28
COL6A3-202ENST00000347401 TFR2Q9UP52 801 aa13.28□□□□□ -0.28
COL6A3-202ENST00000347401 KIAA0100Q14667 2235 aaKnown RBP13.28□□□□□ -0.28
COL6A3-202ENST00000347401 FAM172BPA6NC97 362 aa13.28□□□□□ -0.28
COL6A3-202ENST00000347401 NPPAP01160 153 aa13.28□□□□□ -0.28
COL6A3-202ENST00000347401 CCNB1P14635 433 aa13.28□□□□□ -0.28
COL6A3-202ENST00000347401 IRF8Q02556 426 aa13.28□□□□□ -0.28
COL6A3-202ENST00000347401 GTPBP2Q9BX10 602 aaKnown RBP13.28□□□□□ -0.28
COL6A3-202ENST00000347401 MRPL9Q9BYD2 267 aaKnown RBP13.28□□□□□ -0.28
COL6A3-202ENST00000347401 DNAJC11Q9NVH1 559 aa13.28□□□□□ -0.28
COL6A3-202ENST00000347401 A0A0J9YYE9 177 aa13.28□□□□□ -0.28
COL6A3-202ENST00000347401 PPEF2O14830 753 aa13.28□□□□□ -0.28
COL6A3-202ENST00000347401 PSIP1O75475 530 aaKnown RBP13.28□□□□□ -0.28
COL6A3-202ENST00000347401 HSD17B12Q53GQ0 312 aa13.28□□□□□ -0.28
COL6A3-202ENST00000347401 CYP2U1Q7Z449 544 aa13.28□□□□□ -0.28
COL6A3-202ENST00000347401 PGBD3Q8N328 593 aa13.28□□□□□ -0.28
COL6A3-202ENST00000347401 FSTL5Q8N475 847 aaPredicted RBP13.28□□□□□ -0.28
COL6A3-202ENST00000347401 EPS8L1Q8TE68 723 aa13.28□□□□□ -0.28
COL6A3-202ENST00000347401 SLC35C1Q96A29 364 aa13.28□□□□□ -0.28
COL6A3-202ENST00000347401 TOR4AQ9NXH8 423 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms