RNA–Protein interactions for RNA: ENST00000310301.8

VPS41-202, Transcript of VPS41, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS41, Length 5,903 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-202ENST00000310301 TP73O15350 636 aa8.18□□□□□ -1.1
VPS41-202ENST00000310301 TSPAN3O60637 253 aa8.18□□□□□ -1.1
VPS41-202ENST00000310301 LYPLA1O75608 230 aaPredicted RBP8.18□□□□□ -1.1
VPS41-202ENST00000310301 RHOCP08134 193 aa8.18□□□□□ -1.1
VPS41-202ENST00000310301 KCNA5P22460 613 aa8.18□□□□□ -1.1
VPS41-202ENST00000310301 GABRR2P28476 465 aa8.18□□□□□ -1.1
VPS41-202ENST00000310301 GTF2E2P29084 291 aaKnown RBP8.18□□□□□ -1.1
VPS41-202ENST00000310301 FMO4P31512 558 aa8.18□□□□□ -1.1
VPS41-202ENST00000310301 CCR1P32246 355 aa8.18□□□□□ -1.1
VPS41-202ENST00000310301 PFKFB4Q16877 469 aa8.18□□□□□ -1.1
VPS41-202ENST00000310301 TNFAIP8L3Q5GJ75 292 aa8.18□□□□□ -1.1
VPS41-202ENST00000310301 GPR158Q5T848 1215 aa8.18□□□□□ -1.1
VPS41-202ENST00000310301 FAM46CQ5VWP2 391 aa8.18□□□□□ -1.1
VPS41-202ENST00000310301 ZNF613Q6PF04 617 aa8.18□□□□□ -1.1
VPS41-202ENST00000310301 ELMO1Q92556 727 aa8.18□□□□□ -1.1
VPS41-202ENST00000310301 S100A13Q99584 98 aa8.18□□□□□ -1.1
VPS41-202ENST00000310301 MECRQ9BV79 373 aa8.18□□□□□ -1.1
VPS41-202ENST00000310301 MED28Q9H204 178 aa8.18□□□□□ -1.1
VPS41-202ENST00000310301 CHD4Q14839 1912 aa8.18□□□□□ -1.1
VPS41-202ENST00000310301 B4GALT4O60513 344 aa8.18□□□□□ -1.1
VPS41-202ENST00000310301 TCEA3O75764 348 aa8.18□□□□□ -1.1
VPS41-202ENST00000310301 FESP07332 822 aa8.18□□□□□ -1.1
VPS41-202ENST00000310301 C8AP07357 584 aa8.18□□□□□ -1.1
VPS41-202ENST00000310301 ZNF806P0C7X5 589 aa8.18□□□□□ -1.1
VPS41-202ENST00000310301 ARF4P18085 180 aaPredicted RBP8.18□□□□□ -1.1
VPS41-202ENST00000310301 TYMPP19971 482 aa8.18□□□□□ -1.1
VPS41-202ENST00000310301 EPHA3P29320 983 aa8.18□□□□□ -1.1
VPS41-202ENST00000310301 SLC5A3P53794 718 aa8.18□□□□□ -1.1
VPS41-202ENST00000310301 CA9Q16790 459 aa8.18□□□□□ -1.1
VPS41-202ENST00000310301 SERINC5Q86VE9 423 aa8.18□□□□□ -1.1
VPS41-202ENST00000310301 GPSM1Q86YR5 675 aa8.18□□□□□ -1.1
VPS41-202ENST00000310301 KATNAL2Q8IYT4 538 aa8.18□□□□□ -1.1
VPS41-202ENST00000310301 SMYD1Q8NB12 490 aa8.18□□□□□ -1.1
VPS41-202ENST00000310301 LPCAT1Q8NF37 534 aa8.18□□□□□ -1.1
VPS41-202ENST00000310301 CIB1Q99828 191 aa8.18□□□□□ -1.1
VPS41-202ENST00000310301 TDRD1Q9BXT4 1180 aaKnown RBP8.18□□□□□ -1.1
VPS41-202ENST00000310301 PTTG2Q9NZH5 202 aa8.18□□□□□ -1.1
VPS41-202ENST00000310301 DNMT3LQ9UJW3 386 aa8.18□□□□□ -1.1
VPS41-202ENST00000310301 VPS28Q9UK41 221 aa8.18□□□□□ -1.1
VPS41-202ENST00000310301 WDR37Q9Y2I8 494 aa8.18□□□□□ -1.1
VPS41-202ENST00000310301 CRYL1Q9Y2S2 319 aa8.18□□□□□ -1.1
VPS41-202ENST00000310301 XIRP1Q702N8 1843 aaKnown RBP8.17□□□□□ -1.1
VPS41-202ENST00000310301 FAM172BPA6NC97 362 aa8.17□□□□□ -1.1
VPS41-202ENST00000310301 C1QTNF3-AMACRE9PGA6 284 aa8.17□□□□□ -1.1
VPS41-202ENST00000310301 CASKO14936 926 aa8.17□□□□□ -1.1
VPS41-202ENST00000310301 CHADO15335 359 aa8.17□□□□□ -1.1
VPS41-202ENST00000310301 NDUFB5O43674 189 aa8.17□□□□□ -1.1
VPS41-202ENST00000310301 GJB6O95452 261 aa8.17□□□□□ -1.1
VPS41-202ENST00000310301 PHC1P78364 1004 aa8.17□□□□□ -1.1
VPS41-202ENST00000310301 FBXO42Q6P3S6 717 aa8.17□□□□□ -1.1
VPS41-202ENST00000310301 TMEM110Q86TL2 294 aa8.17□□□□□ -1.1
VPS41-202ENST00000310301 METTL3Q86U44 580 aaKnown RBP8.17□□□□□ -1.1
VPS41-202ENST00000310301 ZNF655Q8N720 491 aaPredicted RBP8.17□□□□□ -1.1
VPS41-202ENST00000310301 STARD8Q92502 1023 aa8.17□□□□□ -1.1
VPS41-202ENST00000310301 ACDQ96AP0 544 aa8.17□□□□□ -1.1
VPS41-202ENST00000310301 GPN1Q9HCN4 374 aaPredicted RBP8.17□□□□□ -1.1
VPS41-202ENST00000310301 SAMHD1Q9Y3Z3 626 aaKnown RBP8.17□□□□□ -1.1
VPS41-202ENST00000310301 A0A0U1RQF3 1178 aa8.17□□□□□ -1.1
VPS41-202ENST00000310301 DDX3YO15523 660 aaKnown RBP8.17□□□□□ -1.1
VPS41-202ENST00000310301 NRP2O60462 931 aa8.17□□□□□ -1.1
VPS41-202ENST00000310301 THRBP10828 461 aa8.17□□□□□ -1.1
VPS41-202ENST00000310301 DDX6P26196 483 aaKnown RBP eCLIP8.17□□□□□ -1.1
VPS41-202ENST00000310301 WEE1P30291 646 aa8.17□□□□□ -1.1
VPS41-202ENST00000310301 CRADDP78560 199 aa8.17□□□□□ -1.1
VPS41-202ENST00000310301 SPIBQ01892 262 aa8.17□□□□□ -1.1
VPS41-202ENST00000310301 BNIP1Q12981 228 aa8.17□□□□□ -1.1
VPS41-202ENST00000310301 TEAD4Q15561 434 aa8.17□□□□□ -1.1
VPS41-202ENST00000310301 C6orf183Q5T699 404 aa8.17□□□□□ -1.1
VPS41-202ENST00000310301 CCSAPQ6IQ19 270 aaPredicted RBP8.17□□□□□ -1.1
VPS41-202ENST00000310301 PACS1Q6VY07 963 aa8.17□□□□□ -1.1
VPS41-202ENST00000310301 SV2AQ7L0J3 742 aa8.17□□□□□ -1.1
VPS41-202ENST00000310301 ZNF438Q7Z4V0 828 aa8.17□□□□□ -1.1
VPS41-202ENST00000310301 HPS6Q86YV9 775 aa8.17□□□□□ -1.1
VPS41-202ENST00000310301 ZDHHC17Q8IUH5 632 aa8.17□□□□□ -1.1
VPS41-202ENST00000310301 ZC3H7AQ8IWR0 971 aaKnown RBP8.17□□□□□ -1.1
VPS41-202ENST00000310301 POF1BQ8WVV4 589 aa8.17□□□□□ -1.1
VPS41-202ENST00000310301 HLA-CQ95604 372 aa8.17□□□□□ -1.1
VPS41-202ENST00000310301 PWWP2AQ96N64 755 aa8.17□□□□□ -1.1
VPS41-202ENST00000310301 SLC38A2Q96QD8 506 aa8.17□□□□□ -1.1
VPS41-202ENST00000310301 GPATCH1Q9BRR8 931 aaKnown RBP8.17□□□□□ -1.1
VPS41-202ENST00000310301 DSN1Q9H410 356 aa8.17□□□□□ -1.1
VPS41-202ENST00000310301 SAE1Q9UBE0 346 aaPredicted RBP8.17□□□□□ -1.1
VPS41-202ENST00000310301 NOTOA8MTQ0 251 aa8.17□□□□□ -1.1
VPS41-202ENST00000310301 PGRMC2O15173 223 aa8.17□□□□□ -1.1
VPS41-202ENST00000310301 SCGNO76038 276 aa8.17□□□□□ -1.1
VPS41-202ENST00000310301 FGF18O76093 207 aa8.17□□□□□ -1.1
VPS41-202ENST00000310301 NTRK1P04629 796 aa8.17□□□□□ -1.1
VPS41-202ENST00000310301 LTA4HP09960 611 aaKnown RBP8.17□□□□□ -1.1
VPS41-202ENST00000310301 IFI30P13284 250 aa8.17□□□□□ -1.1
VPS41-202ENST00000310301 NR4A1P22736 598 aa8.17□□□□□ -1.1
VPS41-202ENST00000310301 AP1S2P56377 157 aa8.17□□□□□ -1.1
VPS41-202ENST00000310301 TBX4P57082 545 aa8.17□□□□□ -1.1
VPS41-202ENST00000310301 RALGDSQ12967 914 aa8.17□□□□□ -1.1
VPS41-202ENST00000310301 SWI5Q1ZZU3 235 aa8.17□□□□□ -1.1
VPS41-202ENST00000310301 DUPD1Q68J44 220 aa8.17□□□□□ -1.1
VPS41-202ENST00000310301 KIAA1324Q6UXG2 1013 aaKnown RBP8.17□□□□□ -1.1
VPS41-202ENST00000310301 DEFB123Q8N688 67 aa8.17□□□□□ -1.1
VPS41-202ENST00000310301 NXNL1Q96CM4 212 aa8.17□□□□□ -1.1
VPS41-202ENST00000310301 BBS4Q96RK4 519 aa8.17□□□□□ -1.1
VPS41-202ENST00000310301 SFXN1Q9H9B4 322 aa8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms