RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 ZNF347Q96SE7 839 aa6.41□□□□□ -1.38
VPS35-201ENST00000299138 CDRT15Q96T59 188 aa6.41□□□□□ -1.38
VPS35-201ENST00000299138 UGT2B28Q9BY64 529 aa6.41□□□□□ -1.38
VPS35-201ENST00000299138 MTFR1LQ9H019 292 aa6.41□□□□□ -1.38
VPS35-201ENST00000299138 TNKS2Q9H2K2 1166 aa6.41□□□□□ -1.38
VPS35-201ENST00000299138 BRD7Q9NPI1 651 aa6.41□□□□□ -1.38
VPS35-201ENST00000299138 KANSL3Q9P2N6 904 aa6.41□□□□□ -1.38
VPS35-201ENST00000299138 GSTK1Q9Y2Q3 226 aa6.41□□□□□ -1.38
VPS35-201ENST00000299138 STRCQ7RTU9 1775 aa6.4□□□□□ -1.38
VPS35-201ENST00000299138 NHSQ6T4R5 1651 aa6.4□□□□□ -1.38
VPS35-201ENST00000299138 A0A096LPK6 155 aa6.4□□□□□ -1.38
VPS35-201ENST00000299138 F8VP50 259 aa6.4□□□□□ -1.38
VPS35-201ENST00000299138 H3BN98 237 aa6.4□□□□□ -1.38
VPS35-201ENST00000299138 SLC22A1O15245 554 aa6.4□□□□□ -1.38
VPS35-201ENST00000299138 ZBTB11O95625 1053 aaPredicted RBP6.4□□□□□ -1.38
VPS35-201ENST00000299138 TFAP2AP05549 437 aa6.4□□□□□ -1.38
VPS35-201ENST00000299138 PPP2R1BP30154 601 aa6.4□□□□□ -1.38
VPS35-201ENST00000299138 ARL2P36404 184 aa6.4□□□□□ -1.38
VPS35-201ENST00000299138 CPOXP36551 454 aa6.4□□□□□ -1.38
VPS35-201ENST00000299138 HLCSP50747 726 aa6.4□□□□□ -1.38
VPS35-201ENST00000299138 TGFB2P61812 414 aa6.4□□□□□ -1.38
VPS35-201ENST00000299138 NME3Q13232 169 aa6.4□□□□□ -1.38
VPS35-201ENST00000299138 MAD2L1Q13257 205 aaPredicted RBP6.4□□□□□ -1.38
VPS35-201ENST00000299138 NADK2Q4G0N4 442 aa6.4□□□□□ -1.38
VPS35-201ENST00000299138 TDRD10Q5VZ19 366 aaKnown RBP6.4□□□□□ -1.38
VPS35-201ENST00000299138 FAM131AQ6UXB0 335 aa6.4□□□□□ -1.38
VPS35-201ENST00000299138 SH2D5Q6ZV89 423 aa6.4□□□□□ -1.38
VPS35-201ENST00000299138 ANKRD23Q86SG2 305 aa6.4□□□□□ -1.38
VPS35-201ENST00000299138 PLD5Q8N7P1 536 aa6.4□□□□□ -1.38
VPS35-201ENST00000299138 OR2T34Q8NGX1 318 aa6.4□□□□□ -1.38
VPS35-201ENST00000299138 OR2T3Q8NH03 318 aa6.4□□□□□ -1.38
VPS35-201ENST00000299138 FIG4Q92562 907 aa6.4□□□□□ -1.38
VPS35-201ENST00000299138 APOL2Q9BQE5 337 aa6.4□□□□□ -1.38
VPS35-201ENST00000299138 FTHL17Q9BXU8 183 aa6.4□□□□□ -1.38
VPS35-201ENST00000299138 ACE2Q9BYF1 805 aaPredicted RBP6.4□□□□□ -1.38
VPS35-201ENST00000299138 BCO2Q9BYV7 579 aa6.4□□□□□ -1.38
VPS35-201ENST00000299138 CPNE5Q9HCH3 593 aa6.4□□□□□ -1.38
VPS35-201ENST00000299138 OXSMQ9NWU1 459 aa6.4□□□□□ -1.38
VPS35-201ENST00000299138 SNTG2Q9NY99 539 aa6.4□□□□□ -1.38
VPS35-201ENST00000299138 EIF3KQ9UBQ5 218 aaKnown RBP6.4□□□□□ -1.38
VPS35-201ENST00000299138 PADI2Q9Y2J8 665 aa6.4□□□□□ -1.38
VPS35-201ENST00000299138 H7C2Y5 167 aa6.4□□□□□ -1.38
VPS35-201ENST00000299138 AIPO00170 330 aa6.4□□□□□ -1.38
VPS35-201ENST00000299138 PSMD12O00232 456 aaPredicted RBP6.4□□□□□ -1.38
VPS35-201ENST00000299138 MRASO14807 208 aa6.4□□□□□ -1.38
VPS35-201ENST00000299138 CD3EAPO15446 510 aaKnown RBP6.4□□□□□ -1.38
VPS35-201ENST00000299138 HBP1O60381 514 aa6.4□□□□□ -1.38
VPS35-201ENST00000299138 MAFO75444 373 aaPredicted RBP6.4□□□□□ -1.38
VPS35-201ENST00000299138 PABPC1P11940 636 aaKnown RBP6.4□□□□□ -1.38
VPS35-201ENST00000299138 NCAM1P13591 858 aa6.4□□□□□ -1.38
VPS35-201ENST00000299138 JUNBP17275 347 aaPredicted RBP6.4□□□□□ -1.38
VPS35-201ENST00000299138 PAICSP22234 425 aaKnown RBP6.4□□□□□ -1.38
VPS35-201ENST00000299138 GLDCP23378 1020 aa6.4□□□□□ -1.38
VPS35-201ENST00000299138 PEX2P28328 305 aa6.4□□□□□ -1.38
VPS35-201ENST00000299138 MZF1P28698 734 aaPredicted RBP6.4□□□□□ -1.38
VPS35-201ENST00000299138 MAGEA3P43357 314 aa6.4□□□□□ -1.38
VPS35-201ENST00000299138 KLHDC10Q6PID8 442 aa6.4□□□□□ -1.38
VPS35-201ENST00000299138 CYP4Z1Q86W10 505 aa6.4□□□□□ -1.38
VPS35-201ENST00000299138 BPIFB6Q8NFQ5 453 aa6.4□□□□□ -1.38
VPS35-201ENST00000299138 ELMO1Q92556 727 aa6.4□□□□□ -1.38
VPS35-201ENST00000299138 TP53INP1Q96A56 240 aa6.4□□□□□ -1.38
VPS35-201ENST00000299138 LATS2Q9NRM7 1088 aa6.4□□□□□ -1.38
VPS35-201ENST00000299138 WWOXQ9NZC7 414 aa6.4□□□□□ -1.38
VPS35-201ENST00000299138 RPS6KB2Q9UBS0 482 aa6.4□□□□□ -1.38
VPS35-201ENST00000299138 VPS51Q9UID3 782 aa6.4□□□□□ -1.38
VPS35-201ENST00000299138 ZNF510Q9Y2H8 683 aa6.4□□□□□ -1.38
VPS35-201ENST00000299138 RBM7Q9Y580 266 aaKnown RBP6.4□□□□□ -1.38
VPS35-201ENST00000299138 PCDHGA4Q9Y5G9 962 aa6.4□□□□□ -1.38
VPS35-201ENST00000299138 RPS6KL1Q9Y6S9 549 aa6.4□□□□□ -1.38
VPS35-201ENST00000299138 M0QX08 132 aa6.4□□□□□ -1.38
VPS35-201ENST00000299138 NKRFO15226 690 aaKnown RBP eCLIP6.4□□□□□ -1.38
VPS35-201ENST00000299138 SNRPB2P08579 225 aaKnown RBP6.4□□□□□ -1.38
VPS35-201ENST00000299138 ZNF14P17017 642 aaPredicted RBP6.4□□□□□ -1.38
VPS35-201ENST00000299138 AVPR1AP37288 418 aa6.4□□□□□ -1.38
VPS35-201ENST00000299138 LDLRAP1Q5SW96 308 aa6.4□□□□□ -1.38
VPS35-201ENST00000299138 GPR139Q6DWJ6 353 aa6.4□□□□□ -1.38
VPS35-201ENST00000299138 ZNF605Q86T29 641 aa6.4□□□□□ -1.38
VPS35-201ENST00000299138 TREML1Q86YW5 311 aa6.4□□□□□ -1.38
VPS35-201ENST00000299138 EID3Q8N140 333 aa6.4□□□□□ -1.38
VPS35-201ENST00000299138 UBE2J2Q8N2K1 259 aa6.4□□□□□ -1.38
VPS35-201ENST00000299138 ZNF276Q8N554 614 aa6.4□□□□□ -1.38
VPS35-201ENST00000299138 PIK3C3Q8NEB9 887 aa6.4□□□□□ -1.38
VPS35-201ENST00000299138 POP1Q99575 1024 aaKnown RBP6.4□□□□□ -1.38
VPS35-201ENST00000299138 APOL5Q9BWW9 433 aa6.4□□□□□ -1.38
VPS35-201ENST00000299138 DYRK4Q9NR20 520 aa6.4□□□□□ -1.38
VPS35-201ENST00000299138 PCDH10Q9P2E7 1040 aa6.4□□□□□ -1.38
VPS35-201ENST00000299138 PSME2Q9UL46 239 aa6.4□□□□□ -1.38
VPS35-201ENST00000299138 VPS4AQ9UN37 437 aa6.4□□□□□ -1.38
VPS35-201ENST00000299138 AKT3Q9Y243 479 aa6.4□□□□□ -1.38
VPS35-201ENST00000299138 SSC5DA1L4H1 1573 aa6.4□□□□□ -1.38
VPS35-201ENST00000299138 RRN3P2A6NIE6 340 aa6.4□□□□□ -1.39
VPS35-201ENST00000299138 C2CD4BA6NLJ0 364 aa6.4□□□□□ -1.39
VPS35-201ENST00000299138 INO80B-WBP1J3KQ70 363 aa6.4□□□□□ -1.39
VPS35-201ENST00000299138 SULT1B1O43704 296 aa6.4□□□□□ -1.39
VPS35-201ENST00000299138 HIST1H2AGP0C0S8 130 aaPredicted RBP6.4□□□□□ -1.39
VPS35-201ENST00000299138 HSD17B1P14061 328 aa6.4□□□□□ -1.39
VPS35-201ENST00000299138 HIST1H2ADP20671 130 aa6.4□□□□□ -1.39
VPS35-201ENST00000299138 OMPP47874 163 aa6.4□□□□□ -1.39
VPS35-201ENST00000299138 MRPL19P49406 292 aaKnown RBP6.4□□□□□ -1.39
VPS35-201ENST00000299138 AQP4P55087 323 aa6.4□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms