RNA–Protein interactions for RNA: ENST00000265745.13

VPS41-201, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-201ENST00000265745 PQLC3Q8N755 202 aa9.71□□□□□ -0.86
VPS41-201ENST00000265745 Q8N9G6 341 aaPredicted RBP9.71□□□□□ -0.86
VPS41-201ENST00000265745 ARRDC2Q8TBH0 407 aa9.71□□□□□ -0.86
VPS41-201ENST00000265745 KCNE4Q8WWG9 221 aa9.71□□□□□ -0.86
VPS41-201ENST00000265745 FAF2Q96CS3 445 aa9.71□□□□□ -0.86
VPS41-201ENST00000265745 LIN37Q96GY3 246 aaPredicted RBP9.71□□□□□ -0.86
VPS41-201ENST00000265745 SMIM14Q96QK8 99 aa9.71□□□□□ -0.86
VPS41-201ENST00000265745 GFM1Q96RP9 751 aaKnown RBP9.71□□□□□ -0.86
VPS41-201ENST00000265745 DNAJC7Q99615 494 aa9.71□□□□□ -0.86
VPS41-201ENST00000265745 ZNF670Q9BS34 389 aa9.71□□□□□ -0.86
VPS41-201ENST00000265745 PACSIN1Q9BY11 444 aa9.71□□□□□ -0.86
VPS41-201ENST00000265745 FRMD8Q9BZ67 464 aaPredicted RBP9.71□□□□□ -0.86
VPS41-201ENST00000265745 DPH1Q9BZG8 443 aa9.71□□□□□ -0.86
VPS41-201ENST00000265745 FOXP3Q9BZS1 431 aa9.71□□□□□ -0.86
VPS41-201ENST00000265745 POLR1EQ9GZS1 481 aaKnown RBP9.71□□□□□ -0.86
VPS41-201ENST00000265745 LRRN3Q9H3W5 708 aa9.71□□□□□ -0.86
VPS41-201ENST00000265745 DPEP2Q9H4A9 486 aa9.71□□□□□ -0.86
VPS41-201ENST00000265745 SYNDIG1Q9H7V2 258 aa9.71□□□□□ -0.86
VPS41-201ENST00000265745 CARS2Q9HA77 564 aaKnown RBP9.71□□□□□ -0.86
VPS41-201ENST00000265745 PHPT1Q9NRX4 125 aaPredicted RBP9.71□□□□□ -0.86
VPS41-201ENST00000265745 SPATS2LQ9NUQ6 558 aaKnown RBP9.71□□□□□ -0.86
VPS41-201ENST00000265745 RBM22Q9NW64 420 aaKnown RBP eCLIP9.71□□□□□ -0.86
VPS41-201ENST00000265745 TRNAU1APQ9NX07 287 aaKnown RBP9.71□□□□□ -0.86
VPS41-201ENST00000265745 LRIT1Q9P2V4 623 aa9.71□□□□□ -0.86
VPS41-201ENST00000265745 MOSPD1Q9UJG1 213 aa9.71□□□□□ -0.86
VPS41-201ENST00000265745 ADAMTS20P59510 1910 aa9.71□□□□□ -0.86
VPS41-201ENST00000265745 A0A0J9YYE9 177 aa9.7□□□□□ -0.86
VPS41-201ENST00000265745 TEX51A0A1B0GUA7 166 aa9.7□□□□□ -0.86
VPS41-201ENST00000265745 SSU72P8A0A1W2PR75 194 aa9.7□□□□□ -0.86
VPS41-201ENST00000265745 PLD2O14939 933 aa9.7□□□□□ -0.86
VPS41-201ENST00000265745 ATXN7O15265 892 aaPredicted RBP9.7□□□□□ -0.86
VPS41-201ENST00000265745 KLK10O43240 276 aa9.7□□□□□ -0.86
VPS41-201ENST00000265745 NUDT21O43809 227 aaKnown RBP9.7□□□□□ -0.86
VPS41-201ENST00000265745 MAP3K6O95382 1288 aa9.7□□□□□ -0.86
VPS41-201ENST00000265745 SOD1P00441 154 aa9.7□□□□□ -0.86
VPS41-201ENST00000265745 TRBC1P01850 177 aa9.7□□□□□ -0.86
VPS41-201ENST00000265745 FGF1P05230 155 aa9.7□□□□□ -0.86
VPS41-201ENST00000265745 TPM3P06753 285 aa9.7□□□□□ -0.86
VPS41-201ENST00000265745 ITGA2BP08514 1039 aa9.7□□□□□ -0.86
VPS41-201ENST00000265745 KRT7P08729 469 aa9.7□□□□□ -0.86
VPS41-201ENST00000265745 TMEM253P0C7T8 217 aa9.7□□□□□ -0.86
VPS41-201ENST00000265745 KRT10P13645 584 aa9.7□□□□□ -0.86
VPS41-201ENST00000265745 CCNB1P14635 433 aa9.7□□□□□ -0.86
VPS41-201ENST00000265745 CCKBRP32239 447 aa9.7□□□□□ -0.86
VPS41-201ENST00000265745 MAN1A1P33908 653 aa9.7□□□□□ -0.86
VPS41-201ENST00000265745 GJC1P36383 396 aa9.7□□□□□ -0.86
VPS41-201ENST00000265745 POLD2P49005 469 aa9.7□□□□□ -0.86
VPS41-201ENST00000265745 UCNP55089 124 aa9.7□□□□□ -0.86
VPS41-201ENST00000265745 INHBCP55103 352 aa9.7□□□□□ -0.86
VPS41-201ENST00000265745 CXADRP78310 365 aa9.7□□□□□ -0.86
VPS41-201ENST00000265745 DSC2Q02487 901 aa9.7□□□□□ -0.86
VPS41-201ENST00000265745 GBE1Q04446 702 aa9.7□□□□□ -0.86
VPS41-201ENST00000265745 SLC10A2Q12908 348 aaPredicted RBP9.7□□□□□ -0.86
VPS41-201ENST00000265745 EIF3IQ13347 325 aaKnown RBP9.7□□□□□ -0.86
VPS41-201ENST00000265745 IFI16Q16666 785 aaKnown RBP9.7□□□□□ -0.86
VPS41-201ENST00000265745 C14orf28Q4W4Y0 310 aa9.7□□□□□ -0.86
VPS41-201ENST00000265745 BROXQ5VW32 411 aa9.7□□□□□ -0.86
VPS41-201ENST00000265745 LRRC66Q68CR7 880 aa9.7□□□□□ -0.86
VPS41-201ENST00000265745 TIGD7Q6NT04 549 aaPredicted RBP9.7□□□□□ -0.86
VPS41-201ENST00000265745 FOXR1Q6PIV2 292 aa9.7□□□□□ -0.86
VPS41-201ENST00000265745 RAB11FIP2Q7L804 512 aa9.7□□□□□ -0.86
VPS41-201ENST00000265745 CLEC14AQ86T13 490 aa9.7□□□□□ -0.86
VPS41-201ENST00000265745 NLRP8Q86W28 1048 aa9.7□□□□□ -0.86
VPS41-201ENST00000265745 CCNJLQ8IV13 435 aa9.7□□□□□ -0.86
VPS41-201ENST00000265745 ANKMY2Q8IV38 441 aa9.7□□□□□ -0.86
VPS41-201ENST00000265745 NDUFAF2Q8N183 169 aa9.7□□□□□ -0.86
VPS41-201ENST00000265745 LSM14AQ8ND56 463 aaKnown RBP9.7□□□□□ -0.86
VPS41-201ENST00000265745 CTNNBL1Q8WYA6 563 aaPredicted RBP9.7□□□□□ -0.86
VPS41-201ENST00000265745 RAPGEF5Q92565 580 aa9.7□□□□□ -0.86
VPS41-201ENST00000265745 SCAMP4Q969E2 229 aa9.7□□□□□ -0.86
VPS41-201ENST00000265745 SCARF2Q96GP6 870 aaPredicted RBP9.7□□□□□ -0.86
VPS41-201ENST00000265745 TMEM74Q96NL1 305 aa9.7□□□□□ -0.86
VPS41-201ENST00000265745 ABCG8Q9H221 673 aa9.7□□□□□ -0.86
VPS41-201ENST00000265745 AMACRQ9UHK6 382 aa9.7□□□□□ -0.86
VPS41-201ENST00000265745 LCMT1Q9UIC8 334 aa9.7□□□□□ -0.86
VPS41-201ENST00000265745 SUFUQ9UMX1 484 aa9.7□□□□□ -0.86
VPS41-201ENST00000265745 SLC17A4Q9Y2C5 497 aa9.7□□□□□ -0.86
VPS41-201ENST00000265745 ST14Q9Y5Y6 855 aa9.7□□□□□ -0.86
VPS41-201ENST00000265745 RNF215Q9Y6U7 377 aa9.7□□□□□ -0.86
VPS41-201ENST00000265745 GOLGA6CA6NDK9 693 aa9.69□□□□□ -0.86
VPS41-201ENST00000265745 GOLGA6BA6NDN3 693 aa9.69□□□□□ -0.86
VPS41-201ENST00000265745 EIF4E1BA6NMX2 242 aaKnown RBP9.69□□□□□ -0.86
VPS41-201ENST00000265745 B4DGG1 531 aa9.69□□□□□ -0.86
VPS41-201ENST00000265745 B4GAT1O43505 415 aa9.69□□□□□ -0.86
VPS41-201ENST00000265745 IVLP07476 585 aa9.69□□□□□ -0.86
VPS41-201ENST00000265745 GOLGA6DP0CG33 693 aa9.69□□□□□ -0.86
VPS41-201ENST00000265745 ZNF30P17039 623 aa9.69□□□□□ -0.86
VPS41-201ENST00000265745 MX2P20592 715 aa9.69□□□□□ -0.86
VPS41-201ENST00000265745 PTMSP20962 102 aa9.69□□□□□ -0.86
VPS41-201ENST00000265745 KDELR1P24390 212 aa9.69□□□□□ -0.86
VPS41-201ENST00000265745 UGT1A5P35504 534 aa9.69□□□□□ -0.86
VPS41-201ENST00000265745 GPR1P46091 355 aa9.69□□□□□ -0.86
VPS41-201ENST00000265745 GNPDA1P46926 289 aa9.69□□□□□ -0.86
VPS41-201ENST00000265745 STC1P52823 247 aa9.69□□□□□ -0.86
VPS41-201ENST00000265745 TMPRSS3P57727 454 aa9.69□□□□□ -0.86
VPS41-201ENST00000265745 RPL26P61254 145 aaKnown RBP9.69□□□□□ -0.86
VPS41-201ENST00000265745 B4GALNT1Q00973 533 aa9.69□□□□□ -0.86
VPS41-201ENST00000265745 NIPAL4Q0D2K0 466 aa9.69□□□□□ -0.86
VPS41-201ENST00000265745 ILF3Q12906 894 aaKnown RBP eCLIP9.69□□□□□ -0.86
VPS41-201ENST00000265745 RAET1GQ6H3X3 334 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms