RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 ZBTB14O43829 449 aa16.44■□□□□ 0.22
USP4-201ENST00000265560 ADH1CP00326 375 aa16.44■□□□□ 0.22
USP4-201ENST00000265560 MYL2P10916 166 aa16.44■□□□□ 0.22
USP4-201ENST00000265560 CHRM1P11229 460 aaPredicted RBP16.44■□□□□ 0.22
USP4-201ENST00000265560 FCARP24071 287 aa16.44■□□□□ 0.22
USP4-201ENST00000265560 LIG3P49916 1009 aa16.44■□□□□ 0.22
USP4-201ENST00000265560 CLCN5P51795 746 aa16.44■□□□□ 0.22
USP4-201ENST00000265560 XIAPP98170 497 aa16.44■□□□□ 0.22
USP4-201ENST00000265560 AFTPHQ6ULP2 937 aa16.44■□□□□ 0.22
USP4-201ENST00000265560 CCNYL1Q8N7R7 359 aa16.44■□□□□ 0.22
USP4-201ENST00000265560 C10orf82Q8WW14 230 aa16.44■□□□□ 0.22
USP4-201ENST00000265560 KCNK13Q9HB14 408 aa16.44■□□□□ 0.22
USP4-201ENST00000265560 MAGEE1Q9HCI5 957 aa16.44■□□□□ 0.22
USP4-201ENST00000265560 ZFP14Q9HCL3 533 aa16.44■□□□□ 0.22
USP4-201ENST00000265560 IL26Q9NPH9 171 aa16.44■□□□□ 0.22
USP4-201ENST00000265560 RHOBTB1O94844 696 aa16.44■□□□□ 0.22
USP4-201ENST00000265560 KLHL2O95198 593 aa16.44■□□□□ 0.22
USP4-201ENST00000265560 POP4O95707 220 aaKnown RBP16.44■□□□□ 0.22
USP4-201ENST00000265560 BPIP17213 487 aa16.44■□□□□ 0.22
USP4-201ENST00000265560 TSPAN8P19075 237 aa16.44■□□□□ 0.22
USP4-201ENST00000265560 WASP42768 502 aa16.44■□□□□ 0.22
USP4-201ENST00000265560 OCRLQ01968 901 aa16.44■□□□□ 0.22
USP4-201ENST00000265560 INSCQ1MX18 579 aa16.44■□□□□ 0.22
USP4-201ENST00000265560 VWA5B1Q5TIE3 1220 aa16.44■□□□□ 0.22
USP4-201ENST00000265560 FRS2Q8WU20 508 aa16.44■□□□□ 0.22
USP4-201ENST00000265560 CCT6BQ92526 530 aa16.44■□□□□ 0.22
USP4-201ENST00000265560 TRIM55Q9BYV6 548 aa16.44■□□□□ 0.22
USP4-201ENST00000265560 ASB8Q9H765 288 aa16.44■□□□□ 0.22
USP4-201ENST00000265560 BRD9Q9H8M2 597 aa16.44■□□□□ 0.22
USP4-201ENST00000265560 CLEC1BQ9P126 229 aa16.44■□□□□ 0.22
USP4-201ENST00000265560 DNAJC16Q9Y2G8 782 aa16.44■□□□□ 0.22
USP4-201ENST00000265560 NUMA1Q14980 2115 aa16.44■□□□□ 0.22
USP4-201ENST00000265560 TBX10O75333 385 aa16.43■□□□□ 0.22
USP4-201ENST00000265560 GAB4Q2WGN9 574 aa16.43■□□□□ 0.22
USP4-201ENST00000265560 CCDC153Q494R4 210 aa16.43■□□□□ 0.22
USP4-201ENST00000265560 HSF5Q4G112 596 aaPredicted RBP16.43■□□□□ 0.22
USP4-201ENST00000265560 ATG16L1Q676U5 607 aa16.43■□□□□ 0.22
USP4-201ENST00000265560 ANKRD54Q6NXT1 300 aa16.43■□□□□ 0.22
USP4-201ENST00000265560 PAQR3Q6TCH7 311 aa16.43■□□□□ 0.22
USP4-201ENST00000265560 GPR26Q8NDV2 337 aa16.43■□□□□ 0.22
USP4-201ENST00000265560 LPGAT1Q92604 370 aa16.43■□□□□ 0.22
USP4-201ENST00000265560 OTUB2Q96DC9 234 aa16.43■□□□□ 0.22
USP4-201ENST00000265560 GPR21Q99679 349 aa16.43■□□□□ 0.22
USP4-201ENST00000265560 FAM83CQ9BQN1 747 aa16.43■□□□□ 0.22
USP4-201ENST00000265560 GATA5Q9BWX5 397 aaPredicted RBP16.43■□□□□ 0.22
USP4-201ENST00000265560 TMEM120AQ9BXJ8 343 aa16.43■□□□□ 0.22
USP4-201ENST00000265560 DEC1Q9P2X7 70 aa16.43■□□□□ 0.22
USP4-201ENST00000265560 MED16Q9Y2X0 877 aa16.43■□□□□ 0.22
USP4-201ENST00000265560 SLC30A1Q9Y6M5 507 aa16.43■□□□□ 0.22
USP4-201ENST00000265560 DLX3O60479 287 aa16.43■□□□□ 0.22
USP4-201ENST00000265560 TROVE2P10155 538 aaKnown RBP eCLIP16.43■□□□□ 0.22
USP4-201ENST00000265560 CRABP2P29373 138 aa16.43■□□□□ 0.22
USP4-201ENST00000265560 NNMTP40261 264 aa16.43■□□□□ 0.22
USP4-201ENST00000265560 ITIH4Q14624 930 aa16.43■□□□□ 0.22
USP4-201ENST00000265560 SLC14A2Q15849 920 aa16.43■□□□□ 0.22
USP4-201ENST00000265560 MTDHQ86UE4 582 aaKnown RBP16.43■□□□□ 0.22
USP4-201ENST00000265560 TDHQ8IZJ6 230 aa16.43■□□□□ 0.22
USP4-201ENST00000265560 ACOX2Q99424 681 aa16.43■□□□□ 0.22
USP4-201ENST00000265560 EBF4Q9BQW3 602 aa16.43■□□□□ 0.22
USP4-201ENST00000265560 NSUN3Q9H649 340 aaKnown RBP16.43■□□□□ 0.22
USP4-201ENST00000265560 FBRSL1Q9HCM7 1045 aaKnown RBP16.43■□□□□ 0.22
USP4-201ENST00000265560 ELOVL2Q9NXB9 296 aa16.43■□□□□ 0.22
USP4-201ENST00000265560 SARDHQ9UL12 918 aa16.43■□□□□ 0.22
USP4-201ENST00000265560 PLA2G4CQ9UP65 541 aa16.43■□□□□ 0.22
USP4-201ENST00000265560 ITM2BQ9Y287 266 aa16.43■□□□□ 0.22
USP4-201ENST00000265560 TBC1D3BA6NDS4 549 aa16.43■□□□□ 0.22
USP4-201ENST00000265560 GAPDHSO14556 408 aaPredicted RBP16.43■□□□□ 0.22
USP4-201ENST00000265560 BIRC5O15392 142 aa16.43■□□□□ 0.22
USP4-201ENST00000265560 DLDP09622 509 aaKnown RBP16.43■□□□□ 0.22
USP4-201ENST00000265560 CHRM3P20309 590 aa16.43■□□□□ 0.22
USP4-201ENST00000265560 PDAP1Q13442 181 aaKnown RBP16.43■□□□□ 0.22
USP4-201ENST00000265560 LAMB3Q13751 1172 aa16.43■□□□□ 0.22
USP4-201ENST00000265560 CHRNA6Q15825 494 aa16.43■□□□□ 0.22
USP4-201ENST00000265560 TTC7BQ86TV6 843 aa16.43■□□□□ 0.22
USP4-201ENST00000265560 PCDH20Q8N6Y1 951 aaKnown RBP16.43■□□□□ 0.22
USP4-201ENST00000265560 SIDT2Q8NBJ9 832 aaKnown RBP16.43■□□□□ 0.22
USP4-201ENST00000265560 ERP27Q96DN0 273 aa16.43■□□□□ 0.22
USP4-201ENST00000265560 CHFRQ96EP1 664 aa16.43■□□□□ 0.22
USP4-201ENST00000265560 BIRC8Q96P09 236 aa16.43■□□□□ 0.22
USP4-201ENST00000265560 MARK1Q9P0L2 795 aa16.43■□□□□ 0.22
USP4-201ENST00000265560 B4GALT6Q9UBX8 382 aa16.43■□□□□ 0.22
USP4-201ENST00000265560 TRIM33Q9UPN9 1127 aa16.43■□□□□ 0.22
USP4-201ENST00000265560 WASF2Q9Y6W5 498 aa16.43■□□□□ 0.22
USP4-201ENST00000265560 DOCK9Q9BZ29 2069 aa16.43■□□□□ 0.22
USP4-201ENST00000265560 H3BMM5 538 aa16.42■□□□□ 0.22
USP4-201ENST00000265560 KPNA3O00505 521 aaPredicted RBP16.42■□□□□ 0.22
USP4-201ENST00000265560 TFEBP19484 476 aa16.42■□□□□ 0.22
USP4-201ENST00000265560 AQP5P55064 265 aa16.42■□□□□ 0.22
USP4-201ENST00000265560 PTSQ03393 145 aa16.42■□□□□ 0.22
USP4-201ENST00000265560 CDKN3Q16667 212 aa16.42■□□□□ 0.22
USP4-201ENST00000265560 SETMARQ53H47 684 aaPredicted RBP16.42■□□□□ 0.22
USP4-201ENST00000265560 GDPD4Q6W3E5 623 aa16.42■□□□□ 0.22
USP4-201ENST00000265560 CHRDL2Q6WN34 429 aa16.42■□□□□ 0.22
USP4-201ENST00000265560 ALYREFQ86V81 257 aaKnown RBP16.42■□□□□ 0.22
USP4-201ENST00000265560 TXNDC5Q8NBS9 432 aaKnown RBP16.42■□□□□ 0.22
USP4-201ENST00000265560 GABPB2Q8TAK5 448 aaPredicted RBP16.42■□□□□ 0.22
USP4-201ENST00000265560 SCAMP4Q969E2 229 aa16.42■□□□□ 0.22
USP4-201ENST00000265560 PTERQ96BW5 349 aa16.42■□□□□ 0.22
USP4-201ENST00000265560 CCDC68Q9H2F9 335 aa16.42■□□□□ 0.22
USP4-201ENST00000265560 ZNF576Q9H609 170 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms