RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 SEPT3Q9UH03 358 aa19.38■□□□□ 0.69
CLN3-262ENST00000637699 PCDHGC4Q9Y5F7 938 aa19.38■□□□□ 0.69
CLN3-262ENST00000637699 PSMA2P25787 234 aa19.37■□□□□ 0.69
CLN3-262ENST00000637699 VIPR1P32241 457 aa19.37■□□□□ 0.69
CLN3-262ENST00000637699 ETV3P41162 512 aa19.37■□□□□ 0.69
CLN3-262ENST00000637699 RENBPP51606 427 aa19.37■□□□□ 0.69
CLN3-262ENST00000637699 POLE2P56282 527 aa19.37■□□□□ 0.69
CLN3-262ENST00000637699 CDK3Q00526 305 aa19.37■□□□□ 0.69
CLN3-262ENST00000637699 SLC10A7Q0GE19 358 aa19.37■□□□□ 0.69
CLN3-262ENST00000637699 TRA2AQ13595 282 aaKnown RBP eCLIP19.37■□□□□ 0.69
CLN3-262ENST00000637699 LBRQ14739 615 aaKnown RBP19.37■□□□□ 0.69
CLN3-262ENST00000637699 SKIDA1Q1XH10 827 aa19.37■□□□□ 0.69
CLN3-262ENST00000637699 PPP6R3Q5H9R7 873 aaPredicted RBP19.37■□□□□ 0.69
CLN3-262ENST00000637699 CT47A1Q5JQC4 288 aaPredicted RBP19.37■□□□□ 0.69
CLN3-262ENST00000637699 ERMARDQ5T6L9 678 aa19.37■□□□□ 0.69
CLN3-262ENST00000637699 ACAD10Q6JQN1 1059 aa19.37■□□□□ 0.69
CLN3-262ENST00000637699 HSD11B1LQ7Z5J1 315 aa19.37■□□□□ 0.69
CLN3-262ENST00000637699 TP53INP2Q8IXH6 220 aa19.37■□□□□ 0.69
CLN3-262ENST00000637699 CACNA2D3Q8IZS8 1091 aa19.37■□□□□ 0.69
CLN3-262ENST00000637699 OR4D9Q8NGE8 314 aa19.37■□□□□ 0.69
CLN3-262ENST00000637699 ZNF564Q8TBZ8 553 aaPredicted RBP19.37■□□□□ 0.69
CLN3-262ENST00000637699 ENOX1Q8TC92 643 aaKnown RBP19.37■□□□□ 0.69
CLN3-262ENST00000637699 PSKH2Q96QS6 385 aa19.37■□□□□ 0.69
CLN3-262ENST00000637699 PEBP4Q96S96 227 aa19.37■□□□□ 0.69
CLN3-262ENST00000637699 SNRNP25Q9BV90 132 aaKnown RBP19.37■□□□□ 0.69
CLN3-262ENST00000637699 CDH19Q9H159 772 aa19.37■□□□□ 0.69
CLN3-262ENST00000637699 TMEM9Q9P0T7 183 aa19.37■□□□□ 0.69
CLN3-262ENST00000637699 PLEKHM1Q9Y4G2 1056 aa19.37■□□□□ 0.69
CLN3-262ENST00000637699 IGHV1OR21-1A0A087WYE8 117 aa19.36■□□□□ 0.69
CLN3-262ENST00000637699 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP19.36■□□□□ 0.69
CLN3-262ENST00000637699 HEXIM1O94992 359 aaKnown RBP19.36■□□□□ 0.69
CLN3-262ENST00000637699 CSF2RBP32927 897 aa19.36■□□□□ 0.69
CLN3-262ENST00000637699 ADCY8P40145 1251 aa19.36■□□□□ 0.69
CLN3-262ENST00000637699 PPM1FP49593 454 aaPredicted RBP19.36■□□□□ 0.69
CLN3-262ENST00000637699 PTPRRQ15256 657 aa19.36■□□□□ 0.69
CLN3-262ENST00000637699 RAET1GQ6H3X3 334 aa19.36■□□□□ 0.69
CLN3-262ENST00000637699 DOK6Q6PKX4 331 aa19.36■□□□□ 0.69
CLN3-262ENST00000637699 Q6ZVL8 140 aa19.36■□□□□ 0.69
CLN3-262ENST00000637699 FAM129CQ86XR2 697 aa19.36■□□□□ 0.69
CLN3-262ENST00000637699 ARFGAP1Q8N6T3 406 aa19.36■□□□□ 0.69
CLN3-262ENST00000637699 DTD2Q96FN9 168 aa19.36■□□□□ 0.69
CLN3-262ENST00000637699 DDA1Q9BW61 102 aa19.36■□□□□ 0.69
CLN3-262ENST00000637699 ZMYND15Q9H091 742 aa19.36■□□□□ 0.69
CLN3-262ENST00000637699 OCIAD1Q9NX40 245 aa19.36■□□□□ 0.69
CLN3-262ENST00000637699 KCNK4Q9NYG8 393 aa19.36■□□□□ 0.69
CLN3-262ENST00000637699 EIF3CLB5ME19 914 aaKnown RBP19.35■□□□□ 0.69
CLN3-262ENST00000637699 HTRA2O43464 458 aaPredicted RBP19.35■□□□□ 0.69
CLN3-262ENST00000637699 RAD1O60671 282 aa19.35■□□□□ 0.69
CLN3-262ENST00000637699 CPP00450 1065 aa19.35■□□□□ 0.69
CLN3-262ENST00000637699 THRAP10827 490 aa19.35■□□□□ 0.69
CLN3-262ENST00000637699 ACTR1BP42025 376 aa19.35■□□□□ 0.69
CLN3-262ENST00000637699 CCR10P46092 362 aa19.35■□□□□ 0.69
CLN3-262ENST00000637699 COPB1P53618 953 aaKnown RBP19.35■□□□□ 0.69
CLN3-262ENST00000637699 ACTR1AP61163 376 aa19.35■□□□□ 0.69
CLN3-262ENST00000637699 MAMLD1Q13495 774 aa19.35■□□□□ 0.69
CLN3-262ENST00000637699 ZNF235Q14590 738 aa19.35■□□□□ 0.69
CLN3-262ENST00000637699 TMCO4Q5TGY1 634 aa19.35■□□□□ 0.69
CLN3-262ENST00000637699 CLEC17AQ6ZS10 378 aa19.35■□□□□ 0.69
CLN3-262ENST00000637699 NRSN1Q8IZ57 195 aa19.35■□□□□ 0.69
CLN3-262ENST00000637699 EIF3CQ99613 913 aaKnown RBP19.35■□□□□ 0.69
CLN3-262ENST00000637699 ASPSCR1Q9BZE9 553 aa19.35■□□□□ 0.69
CLN3-262ENST00000637699 EPN3Q9H201 632 aa19.35■□□□□ 0.69
CLN3-262ENST00000637699 FANCLQ9NW38 375 aa19.35■□□□□ 0.69
CLN3-262ENST00000637699 KCTD5Q9NXV2 234 aa19.35■□□□□ 0.69
CLN3-262ENST00000637699 TAS2R14Q9NYV8 317 aa19.35■□□□□ 0.69
CLN3-262ENST00000637699 SLC17A4Q9Y2C5 497 aa19.35■□□□□ 0.69
CLN3-262ENST00000637699 NBASA2RRP1 2371 aa19.34■□□□□ 0.69
CLN3-262ENST00000637699 TRBV23OR9-2A0A075B6M9 112 aa19.34■□□□□ 0.69
CLN3-262ENST00000637699 EFCAB7A8K855 629 aa19.34■□□□□ 0.69
CLN3-262ENST00000637699 TMCO5BA8MYB1 307 aa19.34■□□□□ 0.69
CLN3-262ENST00000637699 ATMINO43313 823 aaPredicted RBP19.34■□□□□ 0.69
CLN3-262ENST00000637699 SOCS5O75159 536 aa19.34■□□□□ 0.69
CLN3-262ENST00000637699 LHCGRP22888 699 aa19.34■□□□□ 0.69
CLN3-262ENST00000637699 SQSTM1Q13501 440 aa19.34■□□□□ 0.69
CLN3-262ENST00000637699 PEX6Q13608 980 aa19.34■□□□□ 0.69
CLN3-262ENST00000637699 DCAF12Q5T6F0 453 aa19.34■□□□□ 0.69
CLN3-262ENST00000637699 ANKS6Q68DC2 871 aa19.34■□□□□ 0.69
CLN3-262ENST00000637699 ZNF761Q86XN6 746 aaPredicted RBP19.34■□□□□ 0.69
CLN3-262ENST00000637699 CBARPQ8N350 705 aaPredicted RBP19.34■□□□□ 0.69
CLN3-262ENST00000637699 SPOCK2Q92563 424 aa19.34■□□□□ 0.69
CLN3-262ENST00000637699 NOD2Q9HC29 1040 aa19.34■□□□□ 0.69
CLN3-262ENST00000637699 PARVAQ9NVD7 372 aa19.34■□□□□ 0.69
CLN3-262ENST00000637699 ANKMY1Q9P2S6 941 aa19.34■□□□□ 0.69
CLN3-262ENST00000637699 PHTF1Q9UMS5 762 aa19.34■□□□□ 0.69
CLN3-262ENST00000637699 TMEM98Q9Y2Y6 226 aa19.34■□□□□ 0.69
CLN3-262ENST00000637699 A0A0U1RQS6 177 aa19.33■□□□□ 0.68
CLN3-262ENST00000637699 A0A1W2PQ67 120 aa19.33■□□□□ 0.68
CLN3-262ENST00000637699 NPIPB15A6NHN6 443 aaPredicted RBP19.33■□□□□ 0.68
CLN3-262ENST00000637699 ZNF891A8MT65 544 aaPredicted RBP19.33■□□□□ 0.68
CLN3-262ENST00000637699 NKX2-8O15522 239 aa19.33■□□□□ 0.68
CLN3-262ENST00000637699 PRPSAP2O60256 369 aa19.33■□□□□ 0.68
CLN3-262ENST00000637699 IVLP07476 585 aa19.33■□□□□ 0.68
CLN3-262ENST00000637699 CYP2A6P11509 494 aaPredicted RBP19.33■□□□□ 0.68
CLN3-262ENST00000637699 GPR1P46091 355 aa19.33■□□□□ 0.68
CLN3-262ENST00000637699 UBAP2LQ14157 1087 aaKnown RBP19.33■□□□□ 0.68
CLN3-262ENST00000637699 IGFBP7Q16270 282 aa19.33■□□□□ 0.68
CLN3-262ENST00000637699 TMEM71Q6P5X7 295 aa19.33■□□□□ 0.68
CLN3-262ENST00000637699 MARK2Q7KZI7 788 aaKnown RBP19.33■□□□□ 0.68
CLN3-262ENST00000637699 TSPAN33Q86UF1 283 aa19.33■□□□□ 0.68
CLN3-262ENST00000637699 PGBD5Q8N414 524 aa19.33■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms