RNA–Protein interactions for RNA: ENST00000620676.4

VPS13D-214, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13D, Length 16,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-214ENST00000620676 NDRG1Q92597 394 aaKnown RBP5.04□□□□□ -1.6
VPS13D-214ENST00000620676 NPLQ9BXD5 320 aaPredicted RBP5.04□□□□□ -1.6
VPS13D-214ENST00000620676 ADAM7Q9H2U9 754 aa5.04□□□□□ -1.6
VPS13D-214ENST00000620676 RPF2Q9H7B2 306 aaKnown RBP5.04□□□□□ -1.6
VPS13D-214ENST00000620676 ABCB8Q9NUT2 735 aa5.04□□□□□ -1.6
VPS13D-214ENST00000620676 SNX6Q9UNH7 406 aa5.04□□□□□ -1.6
VPS13D-214ENST00000620676 ANGPT4Q9Y264 503 aa5.04□□□□□ -1.6
VPS13D-214ENST00000620676 INVSQ9Y283 1065 aa5.04□□□□□ -1.6
VPS13D-214ENST00000620676 AATKQ6ZMQ8 1374 aa5.04□□□□□ -1.6
VPS13D-214ENST00000620676 EML1O00423 815 aa5.04□□□□□ -1.6
VPS13D-214ENST00000620676 INPPL1O15357 1258 aa5.04□□□□□ -1.6
VPS13D-214ENST00000620676 PHKG1Q16816 387 aa5.04□□□□□ -1.6
VPS13D-214ENST00000620676 PTRHD1Q6GMV3 140 aaKnown RBP5.04□□□□□ -1.6
VPS13D-214ENST00000620676 ADHFE1Q8IWW8 467 aa5.04□□□□□ -1.6
VPS13D-214ENST00000620676 SCML4Q8N228 414 aa5.04□□□□□ -1.6
VPS13D-214ENST00000620676 SETD9Q8NE22 299 aa5.04□□□□□ -1.6
VPS13D-214ENST00000620676 CANT1Q8WVQ1 401 aa5.04□□□□□ -1.6
VPS13D-214ENST00000620676 HPDLQ96IR7 371 aa5.04□□□□□ -1.6
VPS13D-214ENST00000620676 USP29Q9HBJ7 922 aa5.04□□□□□ -1.6
VPS13D-214ENST00000620676 TREM1Q9NP99 234 aa5.04□□□□□ -1.6
VPS13D-214ENST00000620676 MRPL15Q9P015 296 aaKnown RBP5.04□□□□□ -1.6
VPS13D-214ENST00000620676 SNX9Q9Y5X1 595 aa5.04□□□□□ -1.6
VPS13D-214ENST00000620676 PALLDQ8WX93 1383 aa5.04□□□□□ -1.6
VPS13D-214ENST00000620676 PLOD2O00469 737 aa5.04□□□□□ -1.6
VPS13D-214ENST00000620676 ARPC2O15144 300 aa5.04□□□□□ -1.6
VPS13D-214ENST00000620676 ITGAVP06756 1048 aa5.04□□□□□ -1.6
VPS13D-214ENST00000620676 MYL9P24844 172 aa5.04□□□□□ -1.6
VPS13D-214ENST00000620676 GLYATQ6IB77 296 aa5.04□□□□□ -1.6
VPS13D-214ENST00000620676 KATNAL2Q8IYT4 538 aa5.04□□□□□ -1.6
VPS13D-214ENST00000620676 SLC7A6OSQ96CW6 309 aaPredicted RBP5.04□□□□□ -1.6
VPS13D-214ENST00000620676 GAS2L1Q99501 681 aaPredicted RBP5.04□□□□□ -1.6
VPS13D-214ENST00000620676 MRPL4Q9BYD3 311 aaKnown RBP5.04□□□□□ -1.6
VPS13D-214ENST00000620676 TRAF6Q9Y4K3 522 aa5.04□□□□□ -1.6
VPS13D-214ENST00000620676 ECDO95905 644 aaPredicted RBP5.04□□□□□ -1.6
VPS13D-214ENST00000620676 CYBBP04839 570 aa5.04□□□□□ -1.6
VPS13D-214ENST00000620676 DCDC1P59894 354 aa5.04□□□□□ -1.6
VPS13D-214ENST00000620676 HERVK_113P63132 956 aa5.04□□□□□ -1.6
VPS13D-214ENST00000620676 TMEM119Q4V9L6 283 aa5.04□□□□□ -1.6
VPS13D-214ENST00000620676 TRIM40Q6P9F5 258 aa5.04□□□□□ -1.6
VPS13D-214ENST00000620676 WDR48Q8TAF3 677 aa5.04□□□□□ -1.6
VPS13D-214ENST00000620676 PIGBQ92521 554 aa5.04□□□□□ -1.6
VPS13D-214ENST00000620676 ZBTB45Q96K62 511 aaPredicted RBP5.04□□□□□ -1.6
VPS13D-214ENST00000620676 RIC8BQ9NVN3 520 aa5.04□□□□□ -1.6
VPS13D-214ENST00000620676 PLK2Q9NYY3 685 aa5.04□□□□□ -1.6
VPS13D-214ENST00000620676 MRPS23Q9Y3D9 190 aaKnown RBP5.04□□□□□ -1.6
VPS13D-214ENST00000620676 MAU2Q9Y6X3 613 aa5.04□□□□□ -1.6
VPS13D-214ENST00000620676 LRRC7Q96NW7 1537 aa5.04□□□□□ -1.6
VPS13D-214ENST00000620676 AXIN1O15169 862 aa5.03□□□□□ -1.6
VPS13D-214ENST00000620676 HDAC3O15379 428 aa5.03□□□□□ -1.6
VPS13D-214ENST00000620676 PIRTP0C851 137 aa5.03□□□□□ -1.6
VPS13D-214ENST00000620676 PDIA6Q15084 440 aa5.03□□□□□ -1.6
VPS13D-214ENST00000620676 KCNA10Q16322 511 aa5.03□□□□□ -1.6
VPS13D-214ENST00000620676 IL27RAQ6UWB1 636 aa5.03□□□□□ -1.6
VPS13D-214ENST00000620676 CCBE1Q6UXH8 406 aaPredicted RBP5.03□□□□□ -1.6
VPS13D-214ENST00000620676 CYP2U1Q7Z449 544 aa5.03□□□□□ -1.6
VPS13D-214ENST00000620676 TBRG4Q969Z0 631 aaKnown RBP eCLIP5.03□□□□□ -1.62e-7■■■■■ 62.8
VPS13D-214ENST00000620676 ALPK1Q96QP1 1244 aa5.03□□□□□ -1.6
VPS13D-214ENST00000620676 RBCK1Q9BYM8 510 aa5.03□□□□□ -1.6
VPS13D-214ENST00000620676 RMND5AQ9H871 391 aa5.03□□□□□ -1.6
VPS13D-214ENST00000620676 PTGFRNQ9P2B2 879 aa5.03□□□□□ -1.6
VPS13D-214ENST00000620676 A0A075B6Q4 140 aa5.03□□□□□ -1.6
VPS13D-214ENST00000620676 A0A1B0GV50 99 aa5.03□□□□□ -1.6
VPS13D-214ENST00000620676 IFRD1O00458 451 aaPredicted RBP5.03□□□□□ -1.6
VPS13D-214ENST00000620676 TADA2AO75478 443 aa5.03□□□□□ -1.6
VPS13D-214ENST00000620676 APOC3P02656 99 aa5.03□□□□□ -1.6
VPS13D-214ENST00000620676 MPP1Q00013 466 aa5.03□□□□□ -1.6
VPS13D-214ENST00000620676 C4orf32Q8N8J7 132 aa5.03□□□□□ -1.6
VPS13D-214ENST00000620676 CRAMP1Q96RY5 1269 aa5.03□□□□□ -1.6
VPS13D-214ENST00000620676 SLC29A1Q99808 456 aa5.03□□□□□ -1.6
VPS13D-214ENST00000620676 WWOXQ9NZC7 414 aa5.03□□□□□ -1.6
VPS13D-214ENST00000620676 SSR3Q9UNL2 185 aa5.03□□□□□ -1.6
VPS13D-214ENST00000620676 ACTL7BQ9Y614 415 aa5.03□□□□□ -1.6
VPS13D-214ENST00000620676 CENPBD1B2RD01 187 aa5.03□□□□□ -1.6
VPS13D-214ENST00000620676 ECHS1P30084 290 aa5.03□□□□□ -1.6
VPS13D-214ENST00000620676 HPCAL1P37235 193 aa5.03□□□□□ -1.6
VPS13D-214ENST00000620676 SPCS2Q15005 226 aa5.03□□□□□ -1.6
VPS13D-214ENST00000620676 AFG1LQ8WV93 481 aa5.03□□□□□ -1.6
VPS13D-214ENST00000620676 SLC5A11Q8WWX8 675 aa5.03□□□□□ -1.6
VPS13D-214ENST00000620676 FAM84BQ96KN1 310 aaPredicted RBP5.03□□□□□ -1.6
VPS13D-214ENST00000620676 RNF6Q9Y252 685 aa5.03□□□□□ -1.6
VPS13D-214ENST00000620676 TYW5A2RUC4 315 aaKnown RBP5.03□□□□□ -1.6
VPS13D-214ENST00000620676 CASKO14936 926 aa5.03□□□□□ -1.6
VPS13D-214ENST00000620676 TIMM44O43615 452 aa5.03□□□□□ -1.6
VPS13D-214ENST00000620676 SLC22A3O75751 556 aa5.03□□□□□ -1.6
VPS13D-214ENST00000620676 STAU1O95793 577 aaKnown RBP5.03□□□□□ -1.6
VPS13D-214ENST00000620676 CBR1P16152 277 aa5.03□□□□□ -1.6
VPS13D-214ENST00000620676 NPR2P20594 1047 aa5.03□□□□□ -1.6
VPS13D-214ENST00000620676 ACAT1P24752 427 aaKnown RBP5.03□□□□□ -1.6
VPS13D-214ENST00000620676 ATRXP46100 2492 aa5.03□□□□□ -1.6
VPS13D-214ENST00000620676 TIGD3Q6B0B8 471 aa5.03□□□□□ -1.6
VPS13D-214ENST00000620676 BSNDQ8WZ55 320 aa5.03□□□□□ -1.6
VPS13D-214ENST00000620676 EBNA1BP2Q99848 306 aaKnown RBP5.03□□□□□ -1.6
VPS13D-214ENST00000620676 SLC6A15Q9H2J7 730 aa5.03□□□□□ -1.6
VPS13D-214ENST00000620676 TAS2R9Q9NYW1 312 aa5.03□□□□□ -1.6
VPS13D-214ENST00000620676 HTRA2O43464 458 aaPredicted RBP5.03□□□□□ -1.6
VPS13D-214ENST00000620676 CSH1P0DML2 217 aa5.03□□□□□ -1.6
VPS13D-214ENST00000620676 CSH2P0DML3 217 aa5.03□□□□□ -1.6
VPS13D-214ENST00000620676 SMSP52788 366 aa5.03□□□□□ -1.6
VPS13D-214ENST00000620676 FMO1Q01740 532 aa5.03□□□□□ -1.6
VPS13D-214ENST00000620676 OLIG2Q13516 323 aa5.03□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms