RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 SCN8AQ9UQD0 1980 aa16.82■□□□□ 0.28
TRIM28-215ENST00000601150 LOC285095A0A1B0GVY8 99 aa16.82■□□□□ 0.28
TRIM28-215ENST00000601150 GOLGA6CA6NDK9 693 aa16.82■□□□□ 0.28
TRIM28-215ENST00000601150 GOLGA6BA6NDN3 693 aa16.82■□□□□ 0.28
TRIM28-215ENST00000601150 NEMP2A6NFY4 417 aa16.82■□□□□ 0.28
TRIM28-215ENST00000601150 PDE2AO00408 941 aaPredicted RBP16.82■□□□□ 0.28
TRIM28-215ENST00000601150 AQP9O43315 295 aa16.82■□□□□ 0.28
TRIM28-215ENST00000601150 ANXA9O76027 345 aa16.82■□□□□ 0.28
TRIM28-215ENST00000601150 RASGRP1O95267 797 aa16.82■□□□□ 0.28
TRIM28-215ENST00000601150 LDOC1O95751 146 aaPredicted RBP16.82■□□□□ 0.28
TRIM28-215ENST00000601150 EPOP01588 193 aa16.82■□□□□ 0.28
TRIM28-215ENST00000601150 FTH1P19P0C7X4 201 aa16.82■□□□□ 0.28
TRIM28-215ENST00000601150 GOLGA6DP0CG33 693 aa16.82■□□□□ 0.28
TRIM28-215ENST00000601150 KELP23276 732 aa16.82■□□□□ 0.28
TRIM28-215ENST00000601150 TEAD1P28347 426 aa16.82■□□□□ 0.28
TRIM28-215ENST00000601150 BLKP51451 505 aa16.82■□□□□ 0.28
TRIM28-215ENST00000601150 MPP3Q13368 585 aa16.82■□□□□ 0.28
TRIM28-215ENST00000601150 ALG11Q2TAA5 492 aa16.82■□□□□ 0.28
TRIM28-215ENST00000601150 HS1BP3Q53T59 392 aa16.82■□□□□ 0.28
TRIM28-215ENST00000601150 ANKRD20A2Q5SQ80 823 aa16.82■□□□□ 0.28
TRIM28-215ENST00000601150 ANKRD20A1Q5TYW2 823 aa16.82■□□□□ 0.28
TRIM28-215ENST00000601150 ANKRD20A3Q5VUR7 823 aa16.82■□□□□ 0.28
TRIM28-215ENST00000601150 RAET1GQ6H3X3 334 aa16.82■□□□□ 0.28
TRIM28-215ENST00000601150 RFLNAQ6ZTI6 216 aa16.82■□□□□ 0.28
TRIM28-215ENST00000601150 LYSMD3Q7Z3D4 306 aa16.82■□□□□ 0.28
TRIM28-215ENST00000601150 SLC13A5Q86YT5 568 aaPredicted RBP16.82■□□□□ 0.28
TRIM28-215ENST00000601150 RBFAQ8N0V3 343 aa16.82■□□□□ 0.28
TRIM28-215ENST00000601150 ZNF548Q8NEK5 533 aaPredicted RBP16.82■□□□□ 0.28
TRIM28-215ENST00000601150 OR4C6Q8NH72 309 aa16.82■□□□□ 0.28
TRIM28-215ENST00000601150 SLC35B2Q8TB61 432 aa16.82■□□□□ 0.28
TRIM28-215ENST00000601150 AP2M1Q96CW1 435 aa16.82■□□□□ 0.28
TRIM28-215ENST00000601150 PDLIM2Q96JY6 352 aa16.82■□□□□ 0.28
TRIM28-215ENST00000601150 CNDP2Q96KP4 475 aaKnown RBP16.82■□□□□ 0.28
TRIM28-215ENST00000601150 TBATAQ96M53 351 aa16.82■□□□□ 0.28
TRIM28-215ENST00000601150 SPATA13Q96N96 652 aa16.82■□□□□ 0.28
TRIM28-215ENST00000601150 TEX101Q9BY14 249 aa16.82■□□□□ 0.28
TRIM28-215ENST00000601150 ABCG8Q9H221 673 aa16.82■□□□□ 0.28
TRIM28-215ENST00000601150 PHPT1Q9NRX4 125 aaPredicted RBP16.82■□□□□ 0.28
TRIM28-215ENST00000601150 GOLGA6AQ9NYA3 693 aa16.82■□□□□ 0.28
TRIM28-215ENST00000601150 SPASTQ9UBP0 616 aa16.82■□□□□ 0.28
TRIM28-215ENST00000601150 KLQ9UEF7 1012 aa16.82■□□□□ 0.28
TRIM28-215ENST00000601150 CD84Q9UIB8 345 aa16.82■□□□□ 0.28
TRIM28-215ENST00000601150 PNMA8BQ9ULN7 279 aaPredicted RBP16.82■□□□□ 0.28
TRIM28-215ENST00000601150 CSNK1G3Q9Y6M4 447 aa16.82■□□□□ 0.28
TRIM28-215ENST00000601150 TRIM38O00635 465 aa16.81■□□□□ 0.28
TRIM28-215ENST00000601150 ENC1O14682 589 aa16.81■□□□□ 0.28
TRIM28-215ENST00000601150 SCAMP1O15126 338 aa16.81■□□□□ 0.28
TRIM28-215ENST00000601150 FFAR2O15552 330 aa16.81■□□□□ 0.28
TRIM28-215ENST00000601150 ZSCAN12O43309 604 aa16.81■□□□□ 0.28
TRIM28-215ENST00000601150 TRIM16O95361 564 aa16.81■□□□□ 0.28
TRIM28-215ENST00000601150 ATXN1LP0C7T5 689 aaKnown RBP16.81■□□□□ 0.28
TRIM28-215ENST00000601150 PIRTP0C851 137 aa16.81■□□□□ 0.28
TRIM28-215ENST00000601150 ALPPL2P10696 532 aa16.81■□□□□ 0.28
TRIM28-215ENST00000601150 MYCLP1P12525 358 aaPredicted RBP16.81■□□□□ 0.28
TRIM28-215ENST00000601150 PMLP29590 882 aa16.81■□□□□ 0.28
TRIM28-215ENST00000601150 SPINT3P49223 89 aa16.81■□□□□ 0.28
TRIM28-215ENST00000601150 HK3P52790 923 aa16.81■□□□□ 0.28
TRIM28-215ENST00000601150 GEMP55040 296 aa16.81■□□□□ 0.28
TRIM28-215ENST00000601150 SRP54P61011 504 aaKnown RBP16.81■□□□□ 0.28
TRIM28-215ENST00000601150 PRPSAP1Q14558 356 aa16.81■□□□□ 0.28
TRIM28-215ENST00000601150 NLRP8Q86W28 1048 aa16.81■□□□□ 0.28
TRIM28-215ENST00000601150 HEATR4Q86WZ0 1026 aa16.81■□□□□ 0.28
TRIM28-215ENST00000601150 HID1Q8IV36 788 aa16.81■□□□□ 0.28
TRIM28-215ENST00000601150 IPMKQ8NFU5 416 aa16.81■□□□□ 0.28
TRIM28-215ENST00000601150 OR56A4Q8NGH8 313 aa16.81■□□□□ 0.28
TRIM28-215ENST00000601150 LMX1AQ8TE12 382 aa16.81■□□□□ 0.28
TRIM28-215ENST00000601150 TSACCQ96A04 125 aaPredicted RBP16.81■□□□□ 0.28
TRIM28-215ENST00000601150 MRGPRX2Q96LB1 330 aa16.81■□□□□ 0.28
TRIM28-215ENST00000601150 PPP1R2P1Q96PQ5 205 aa16.81■□□□□ 0.28
TRIM28-215ENST00000601150 LGR4Q9BXB1 951 aa16.81■□□□□ 0.28
TRIM28-215ENST00000601150 TLR10Q9BXR5 811 aa16.81■□□□□ 0.28
TRIM28-215ENST00000601150 FRMD8P1Q9BZ68 369 aaPredicted RBP16.81■□□□□ 0.28
TRIM28-215ENST00000601150 TCEAL2Q9H3H9 227 aaPredicted RBP16.81■□□□□ 0.28
TRIM28-215ENST00000601150 KCNF1Q9H3M0 494 aa16.81■□□□□ 0.28
TRIM28-215ENST00000601150 ZFYVE1Q9HBF4 777 aa16.81■□□□□ 0.28
TRIM28-215ENST00000601150 NLGN3Q9NZ94 848 aa16.81■□□□□ 0.28
TRIM28-215ENST00000601150 PKD2L2Q9NZM6 624 aa16.81■□□□□ 0.28
TRIM28-215ENST00000601150 ZNF711Q9Y462 761 aa16.81■□□□□ 0.28
TRIM28-215ENST00000601150 RGSL1A5PLK6 1076 aa16.8■□□□□ 0.28
TRIM28-215ENST00000601150 C5orf60A6NFR6 353 aa16.8■□□□□ 0.28
TRIM28-215ENST00000601150 TMEM202A6NGA9 273 aa16.8■□□□□ 0.28
TRIM28-215ENST00000601150 TNFRSF10CO14798 259 aa16.8■□□□□ 0.28
TRIM28-215ENST00000601150 SIGLEC6O43699 453 aa16.8■□□□□ 0.28
TRIM28-215ENST00000601150 PYGLP06737 847 aa16.8■□□□□ 0.28
TRIM28-215ENST00000601150 GIMD1P0DJR0 217 aa16.8■□□□□ 0.28
TRIM28-215ENST00000601150 GPR1P46091 355 aa16.8■□□□□ 0.28
TRIM28-215ENST00000601150 FOXC1Q12948 553 aa16.8■□□□□ 0.28
TRIM28-215ENST00000601150 PRRT3Q5FWE3 981 aa16.8■□□□□ 0.28
TRIM28-215ENST00000601150 SIRPB2Q5JXA9 342 aa16.8■□□□□ 0.28
TRIM28-215ENST00000601150 ADAMTSL4Q6UY14 1074 aa16.8■□□□□ 0.28
TRIM28-215ENST00000601150 RD3Q7Z3Z2 195 aa16.8■□□□□ 0.28
TRIM28-215ENST00000601150 FAM71DQ8N9W8 422 aa16.8■□□□□ 0.28
TRIM28-215ENST00000601150 CCDC110Q8TBZ0 833 aa16.8■□□□□ 0.28
TRIM28-215ENST00000601150 SCAMP4Q969E2 229 aa16.8■□□□□ 0.28
TRIM28-215ENST00000601150 LRRC61Q9BV99 259 aa16.8■□□□□ 0.28
TRIM28-215ENST00000601150 DUSP23Q9BVJ7 150 aa16.8■□□□□ 0.28
TRIM28-215ENST00000601150 RIOK2Q9BVS4 552 aaKnown RBP16.8■□□□□ 0.28
TRIM28-215ENST00000601150 FSD1LQ9BXM9 530 aa16.8■□□□□ 0.28
TRIM28-215ENST00000601150 GPR63Q9BZJ6 419 aa16.8■□□□□ 0.28
TRIM28-215ENST00000601150 TOR4AQ9NXH8 423 aa16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms