RNA–Protein interactions for RNA: ENST00000593223.1

SMAD4-216, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 568 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-216ENST00000593223 NPHP3Q7Z494 1330 aa5.07□□□□□ -1.6
SMAD4-216ENST00000593223 ADGRF5Q8IZF2 1346 aa5.07□□□□□ -1.6
SMAD4-216ENST00000593223 CEP152O94986 1710 aa5.07□□□□□ -1.6
SMAD4-216ENST00000593223 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP5.07□□□□□ -1.6
SMAD4-216ENST00000593223 ANKRD18BA2A2Z9 1011 aa5.07□□□□□ -1.6
SMAD4-216ENST00000593223 FAM90A8PA6NJQ4 464 aa5.07□□□□□ -1.6
SMAD4-216ENST00000593223 C19orf81C9J6K1 198 aa5.07□□□□□ -1.6
SMAD4-216ENST00000593223 FAM90A13PP0C7W8 464 aa5.07□□□□□ -1.6
SMAD4-216ENST00000593223 FAM90A24PP0C7X0 464 aa5.07□□□□□ -1.6
SMAD4-216ENST00000593223 PCNAP12004 261 aa5.07□□□□□ -1.6
SMAD4-216ENST00000593223 PTPN2P17706 415 aa5.07□□□□□ -1.6
SMAD4-216ENST00000593223 GNLYP22749 145 aa5.07□□□□□ -1.6
SMAD4-216ENST00000593223 FMO4P31512 558 aa5.07□□□□□ -1.6
SMAD4-216ENST00000593223 KIF5BP33176 963 aa5.07□□□□□ -1.6
SMAD4-216ENST00000593223 PCYT1AP49585 367 aa5.07□□□□□ -1.6
SMAD4-216ENST00000593223 ZNF132P52740 706 aa5.07□□□□□ -1.6
SMAD4-216ENST00000593223 KRTAP10-11P60412 298 aa5.07□□□□□ -1.6
SMAD4-216ENST00000593223 MPP1Q00013 466 aa5.07□□□□□ -1.6
SMAD4-216ENST00000593223 CYP4A11Q02928 519 aa5.07□□□□□ -1.6
SMAD4-216ENST00000593223 LPIN1Q14693 890 aa5.07□□□□□ -1.6
SMAD4-216ENST00000593223 PSMD6Q15008 389 aa5.07□□□□□ -1.6
SMAD4-216ENST00000593223 DCAF6Q58WW2 860 aa5.07□□□□□ -1.6
SMAD4-216ENST00000593223 SERTAD4-AS1Q5TG53 156 aa5.07□□□□□ -1.6
SMAD4-216ENST00000593223 CCDC129Q6ZRS4 1044 aa5.07□□□□□ -1.6
SMAD4-216ENST00000593223 GALNT5Q7Z7M9 940 aa5.07□□□□□ -1.6
SMAD4-216ENST00000593223 TBC1D26Q86UD7 250 aa5.07□□□□□ -1.6
SMAD4-216ENST00000593223 ZDHHC17Q8IUH5 632 aa5.07□□□□□ -1.6
SMAD4-216ENST00000593223 DENND6AQ8IWF6 608 aa5.07□□□□□ -1.6
SMAD4-216ENST00000593223 KIAA2013Q8IYS2 634 aa5.07□□□□□ -1.6
SMAD4-216ENST00000593223 TCP11L2Q8N4U5 519 aa5.07□□□□□ -1.6
SMAD4-216ENST00000593223 PLD5Q8N7P1 536 aa5.07□□□□□ -1.6
SMAD4-216ENST00000593223 LSMEM1Q8N8F7 131 aa5.07□□□□□ -1.6
SMAD4-216ENST00000593223 PRR26Q8N8Z3 221 aa5.07□□□□□ -1.6
SMAD4-216ENST00000593223 VMP1Q96GC9 406 aa5.07□□□□□ -1.6
SMAD4-216ENST00000593223 THOC3Q96J01 351 aaKnown RBP5.07□□□□□ -1.6
SMAD4-216ENST00000593223 NUF2Q9BZD4 464 aa5.07□□□□□ -1.6
SMAD4-216ENST00000593223 SMC4Q9NTJ3 1288 aa5.07□□□□□ -1.6
SMAD4-216ENST00000593223 ARGLU1Q9NWB6 273 aaPredicted RBP5.07□□□□□ -1.6
SMAD4-216ENST00000593223 HCN3Q9P1Z3 774 aa5.07□□□□□ -1.6
SMAD4-216ENST00000593223 XPO7Q9UIA9 1087 aaKnown RBP5.07□□□□□ -1.6
SMAD4-216ENST00000593223 PCDHA7Q9UN72 937 aa5.07□□□□□ -1.6
SMAD4-216ENST00000593223 A0A0C4DFX4 3053 aa5.07□□□□□ -1.6
SMAD4-216ENST00000593223 ARHGEF28Q8N1W1 1705 aaKnown RBP5.06□□□□□ -1.6
SMAD4-216ENST00000593223 PTPN23Q9H3S7 1636 aa5.06□□□□□ -1.6
SMAD4-216ENST00000593223 TEX13CA0A0J9YWL9 993 aa5.06□□□□□ -1.6
SMAD4-216ENST00000593223 GAGE10A6NGK3 116 aa5.06□□□□□ -1.6
SMAD4-216ENST00000593223 LACTBL1A8MY62 500 aa5.06□□□□□ -1.6
SMAD4-216ENST00000593223 EBAG9O00559 213 aa5.06□□□□□ -1.6
SMAD4-216ENST00000593223 GALTP07902 379 aa5.06□□□□□ -1.6
SMAD4-216ENST00000593223 HOXC6P09630 235 aa5.06□□□□□ -1.6
SMAD4-216ENST00000593223 T-ENOLP0DO92 83 aa5.06□□□□□ -1.6
SMAD4-216ENST00000593223 GLULP15104 373 aa5.06□□□□□ -1.6
SMAD4-216ENST00000593223 DCTDP32321 178 aa5.06□□□□□ -1.6
SMAD4-216ENST00000593223 TTKP33981 857 aa5.06□□□□□ -1.6
SMAD4-216ENST00000593223 SSR1P43307 286 aaKnown RBP5.06□□□□□ -1.6
SMAD4-216ENST00000593223 TNNT2P45379 298 aaPredicted RBP5.06□□□□□ -1.6
SMAD4-216ENST00000593223 TUBP50607 506 aa5.06□□□□□ -1.6
SMAD4-216ENST00000593223 NUDT6P53370 316 aa5.06□□□□□ -1.6
SMAD4-216ENST00000593223 UFM1P61960 85 aa5.06□□□□□ -1.6
SMAD4-216ENST00000593223 DSC1Q08554 894 aa5.06□□□□□ -1.6
SMAD4-216ENST00000593223 FAM27E3Q08E93 113 aa5.06□□□□□ -1.6
SMAD4-216ENST00000593223 HNRNPA0Q13151 305 aaKnown RBP5.06□□□□□ -1.6
SMAD4-216ENST00000593223 ARHGEF6Q15052 776 aa5.06□□□□□ -1.6
SMAD4-216ENST00000593223 HSP90AB3PQ58FF7 597 aa5.06□□□□□ -1.6
SMAD4-216ENST00000593223 RILPL1Q5EBL4 403 aa5.06□□□□□ -1.6
SMAD4-216ENST00000593223 FAM69AQ5T7M9 428 aa5.06□□□□□ -1.6
SMAD4-216ENST00000593223 TMEM81Q6P7N7 255 aa5.06□□□□□ -1.6
SMAD4-216ENST00000593223 TRILQ7L0X0 811 aa5.06□□□□□ -1.6
SMAD4-216ENST00000593223 TBC1D1Q86TI0 1168 aaPredicted RBP5.06□□□□□ -1.6
SMAD4-216ENST00000593223 MB21D2Q8IYB1 491 aaPredicted RBP5.06□□□□□ -1.6
SMAD4-216ENST00000593223 ZNF713Q8N859 430 aaPredicted RBP5.06□□□□□ -1.6
SMAD4-216ENST00000593223 ARL10Q8N8L6 244 aa5.06□□□□□ -1.6
SMAD4-216ENST00000593223 C11orf65Q8NCR3 313 aa5.06□□□□□ -1.6
SMAD4-216ENST00000593223 OR14A16Q8NHC5 309 aa5.06□□□□□ -1.6
SMAD4-216ENST00000593223 GPT2Q8TD30 523 aa5.06□□□□□ -1.6
SMAD4-216ENST00000593223 ST8SIA4Q92187 359 aa5.06□□□□□ -1.6
SMAD4-216ENST00000593223 LYZL4Q96KX0 146 aa5.06□□□□□ -1.6
SMAD4-216ENST00000593223 ZPBPQ9BS86 351 aa5.06□□□□□ -1.6
SMAD4-216ENST00000593223 TMEM204Q9BSN7 226 aa5.06□□□□□ -1.6
SMAD4-216ENST00000593223 DBNDD1Q9H9R9 158 aa5.06□□□□□ -1.6
SMAD4-216ENST00000593223 PPP1R14DQ9NXH3 145 aa5.06□□□□□ -1.6
SMAD4-216ENST00000593223 KIAA1456Q9P272 454 aa5.06□□□□□ -1.6
SMAD4-216ENST00000593223 NDRG3Q9UGV2 375 aa5.06□□□□□ -1.6
SMAD4-216ENST00000593223 RAI2Q9Y5P3 530 aa5.06□□□□□ -1.6
SMAD4-216ENST00000593223 MAGED1Q9Y5V3 778 aaPredicted RBP5.06□□□□□ -1.6
SMAD4-216ENST00000593223 NEXMIFQ5QGS0 1516 aa5.06□□□□□ -1.6
SMAD4-216ENST00000593223 ADGRL2O95490 1459 aa5.06□□□□□ -1.6
SMAD4-216ENST00000593223 LRRIQ1Q96JM4 1722 aa5.06□□□□□ -1.6
SMAD4-216ENST00000593223 ARHGAP31Q2M1Z3 1444 aa5.06□□□□□ -1.6
SMAD4-216ENST00000593223 A6NLC8 198 aa5.05□□□□□ -1.6
SMAD4-216ENST00000593223 TACC1O75410 805 aa5.05□□□□□ -1.6
SMAD4-216ENST00000593223 DDX58O95786 925 aaKnown RBP5.05□□□□□ -1.6
SMAD4-216ENST00000593223 COX7A2P14406 83 aa5.05□□□□□ -1.6
SMAD4-216ENST00000593223 MYF6P23409 242 aa5.05□□□□□ -1.6
SMAD4-216ENST00000593223 CASQ1P31415 396 aa5.05□□□□□ -1.6
SMAD4-216ENST00000593223 CLNS1AP54105 237 aaKnown RBP5.05□□□□□ -1.6
SMAD4-216ENST00000593223 NAP1L1P55209 391 aaKnown RBP5.05□□□□□ -1.6
SMAD4-216ENST00000593223 ABATP80404 500 aa5.05□□□□□ -1.6
SMAD4-216ENST00000593223 G3BP1Q13283 466 aaKnown RBP eCLIP5.05□□□□□ -1.6
SMAD4-216ENST00000593223 ITGADQ13349 1161 aa5.05□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms