RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 PPP2R5EQ16537 467 aa23.87■■□□□ 1.41
SHMT1-206ENST00000579558 C6orf132Q5T0Z8 1188 aa23.87■■□□□ 1.41
SHMT1-206ENST00000579558 KCTD16Q68DU8 428 aa23.87■■□□□ 1.41
SHMT1-206ENST00000579558 RAET1GQ6H3X3 334 aa23.87■■□□□ 1.41
SHMT1-206ENST00000579558 NT5DC3Q86UY8 548 aa23.87■■□□□ 1.41
SHMT1-206ENST00000579558 HEATR4Q86WZ0 1026 aa23.87■■□□□ 1.41
SHMT1-206ENST00000579558 KIAA1524Q8TCG1 905 aa23.87■■□□□ 1.41
SHMT1-206ENST00000579558 GLMNQ92990 594 aa23.87■■□□□ 1.41
SHMT1-206ENST00000579558 HAUS1Q96CS2 278 aa23.87■■□□□ 1.41
SHMT1-206ENST00000579558 IMP4Q96G21 291 aaKnown RBP23.87■■□□□ 1.41
SHMT1-206ENST00000579558 CD84Q9UIB8 345 aa23.87■■□□□ 1.41
SHMT1-206ENST00000579558 MOSPD1Q9UJG1 213 aa23.87■■□□□ 1.41
SHMT1-206ENST00000579558 PCDHA3Q9Y5H8 950 aa23.87■■□□□ 1.41
SHMT1-206ENST00000579558 DGKBQ9Y6T7 804 aa23.87■■□□□ 1.41
SHMT1-206ENST00000579558 TNFRSF10CO14798 259 aa23.86■■□□□ 1.41
SHMT1-206ENST00000579558 MYCLP1P12525 358 aaPredicted RBP23.86■■□□□ 1.41
SHMT1-206ENST00000579558 PTPN3P26045 913 aa23.86■■□□□ 1.41
SHMT1-206ENST00000579558 STC1P52823 247 aa23.86■■□□□ 1.41
SHMT1-206ENST00000579558 PTSQ03393 145 aa23.86■■□□□ 1.41
SHMT1-206ENST00000579558 NR0B2Q15466 257 aa23.86■■□□□ 1.41
SHMT1-206ENST00000579558 CDKN3Q16667 212 aa23.86■■□□□ 1.41
SHMT1-206ENST00000579558 QPCTQ16769 361 aa23.86■■□□□ 1.41
SHMT1-206ENST00000579558 TEX44Q53QW1 395 aa23.86■■□□□ 1.41
SHMT1-206ENST00000579558 RFLNAQ6ZTI6 216 aa23.86■■□□□ 1.41
SHMT1-206ENST00000579558 ZC3H18Q86VM9 953 aaKnown RBP23.86■■□□□ 1.41
SHMT1-206ENST00000579558 TXLNBQ8N3L3 684 aa23.86■■□□□ 1.41
SHMT1-206ENST00000579558 IFI44Q8TCB0 444 aa23.86■■□□□ 1.41
SHMT1-206ENST00000579558 DESI2Q9BSY9 194 aa23.86■■□□□ 1.41
SHMT1-206ENST00000579558 BOCQ9BWV1 1114 aa23.86■■□□□ 1.41
SHMT1-206ENST00000579558 HEMGNQ9BXL5 484 aa23.86■■□□□ 1.41
SHMT1-206ENST00000579558 TEX101Q9BY14 249 aa23.86■■□□□ 1.41
SHMT1-206ENST00000579558 ADGRE3Q9BY15 652 aa23.86■■□□□ 1.41
SHMT1-206ENST00000579558 SLC25A51Q9H1U9 297 aa23.86■■□□□ 1.41
SHMT1-206ENST00000579558 MRPL40Q9NQ50 206 aaKnown RBP23.86■■□□□ 1.41
SHMT1-206ENST00000579558 ZMIZ1Q9ULJ6 1067 aa23.86■■□□□ 1.41
SHMT1-206ENST00000579558 ASPMQ8IZT6 3477 aa23.86■■□□□ 1.41
SHMT1-206ENST00000579558 CPED1A4D0V7 1026 aa23.85■■□□□ 1.41
SHMT1-206ENST00000579558 GP1BAP07359 652 aa23.85■■□□□ 1.41
SHMT1-206ENST00000579558 COPS2P61201 443 aa23.85■■□□□ 1.41
SHMT1-206ENST00000579558 INSM1Q01101 510 aaPredicted RBP23.85■■□□□ 1.41
SHMT1-206ENST00000579558 DPTQ07507 201 aa23.85■■□□□ 1.41
SHMT1-206ENST00000579558 GALNT3Q14435 633 aa23.85■■□□□ 1.41
SHMT1-206ENST00000579558 BBS12Q6ZW61 710 aa23.85■■□□□ 1.41
SHMT1-206ENST00000579558 GKN2Q86XP6 184 aa23.85■■□□□ 1.41
SHMT1-206ENST00000579558 SDR16C5Q8N3Y7 309 aa23.85■■□□□ 1.41
SHMT1-206ENST00000579558 SCG3Q8WXD2 468 aaKnown RBP23.85■■□□□ 1.41
SHMT1-206ENST00000579558 AP2M1Q96CW1 435 aa23.85■■□□□ 1.41
SHMT1-206ENST00000579558 LYSMD1Q96S90 227 aa23.85■■□□□ 1.41
SHMT1-206ENST00000579558 MLPHQ9BV36 600 aaPredicted RBP23.85■■□□□ 1.41
SHMT1-206ENST00000579558 ABCG8Q9H221 673 aa23.85■■□□□ 1.41
SHMT1-206ENST00000579558 GLOD4Q9HC38 313 aa23.85■■□□□ 1.41
SHMT1-206ENST00000579558 CYP4F12Q9HCS2 524 aa23.85■■□□□ 1.41
SHMT1-206ENST00000579558 IGF2RP11717 2491 aa23.85■■□□□ 1.41
SHMT1-206ENST00000579558 C1orf232A0A0U1RR37 186 aa23.84■■□□□ 1.41
SHMT1-206ENST00000579558 CCDC66A2RUB6 948 aa23.84■■□□□ 1.41
SHMT1-206ENST00000579558 GRID2IPA4D2P6 1211 aa23.84■■□□□ 1.41
SHMT1-206ENST00000579558 ANKRD66B4E2M5 251 aa23.84■■□□□ 1.41
SHMT1-206ENST00000579558 MTSS1O43312 755 aa23.84■■□□□ 1.41
SHMT1-206ENST00000579558 CLDN7O95471 211 aa23.84■■□□□ 1.41
SHMT1-206ENST00000579558 CTNNA2P26232 953 aa23.84■■□□□ 1.41
SHMT1-206ENST00000579558 TEAD1P28347 426 aa23.84■■□□□ 1.41
SHMT1-206ENST00000579558 GPR1P46091 355 aa23.84■■□□□ 1.41
SHMT1-206ENST00000579558 RPIAP49247 311 aa23.84■■□□□ 1.41
SHMT1-206ENST00000579558 CDK3Q00526 305 aa23.84■■□□□ 1.41
SHMT1-206ENST00000579558 KIF5AQ12840 1032 aa23.84■■□□□ 1.41
SHMT1-206ENST00000579558 CAMK2BQ13554 666 aa23.84■■□□□ 1.41
SHMT1-206ENST00000579558 PCSK7Q16549 785 aa23.84■■□□□ 1.41
SHMT1-206ENST00000579558 CCDC181Q5TID7 509 aa23.84■■□□□ 1.41
SHMT1-206ENST00000579558 GUSBP11Q6P575 273 aa23.84■■□□□ 1.41
SHMT1-206ENST00000579558 LVRNQ6Q4G3 990 aa23.84■■□□□ 1.41
SHMT1-206ENST00000579558 EFL1Q7Z2Z2 1120 aaKnown RBP23.84■■□□□ 1.41
SHMT1-206ENST00000579558 KDELC2Q7Z4H8 507 aa23.84■■□□□ 1.41
SHMT1-206ENST00000579558 SLC35F3Q8IY50 421 aa23.84■■□□□ 1.41
SHMT1-206ENST00000579558 LRRC57Q8N9N7 239 aa23.84■■□□□ 1.41
SHMT1-206ENST00000579558 TEKT5Q96M29 485 aa23.84■■□□□ 1.41
SHMT1-206ENST00000579558 CFAP47Q6ZTR5 3102 aa23.84■■□□□ 1.41
SHMT1-206ENST00000579558 PRSS38A1L453 326 aa23.83■■□□□ 1.41
SHMT1-206ENST00000579558 MACROD2A1Z1Q3 448 aa23.83■■□□□ 1.41
SHMT1-206ENST00000579558 TRABD2BA6NFA1 517 aa23.83■■□□□ 1.41
SHMT1-206ENST00000579558 RWDD2BP57060 319 aa23.83■■□□□ 1.41
SHMT1-206ENST00000579558 WASHC5Q12768 1159 aa23.83■■□□□ 1.41
SHMT1-206ENST00000579558 TARDBPQ13148 414 aaKnown RBP eCLIP23.83■■□□□ 1.41
SHMT1-206ENST00000579558 SLC14A2Q15849 920 aa23.83■■□□□ 1.41
SHMT1-206ENST00000579558 ZNF765Q7L2R6 523 aa23.83■■□□□ 1.41
SHMT1-206ENST00000579558 NRSN1Q8IZ57 195 aa23.83■■□□□ 1.41
SHMT1-206ENST00000579558 PDCD7Q8N8D1 485 aaKnown RBP23.83■■□□□ 1.41
SHMT1-206ENST00000579558 SPATA22Q8NHS9 363 aa23.83■■□□□ 1.41
SHMT1-206ENST00000579558 SCAMP4Q969E2 229 aa23.83■■□□□ 1.41
SHMT1-206ENST00000579558 TADA1Q96BN2 335 aa23.83■■□□□ 1.41
SHMT1-206ENST00000579558 QKIQ96PU8 341 aaKnown RBP eCLIP23.83■■□□□ 1.41
SHMT1-206ENST00000579558 TRIB3Q96RU7 358 aa23.83■■□□□ 1.41
SHMT1-206ENST00000579558 CCDC86Q9H6F5 360 aaKnown RBP23.83■■□□□ 1.41
SHMT1-206ENST00000579558 SIRPGQ9P1W8 387 aa23.83■■□□□ 1.41
SHMT1-206ENST00000579558 TRIM10Q9UDY6 481 aa23.83■■□□□ 1.41
SHMT1-206ENST00000579558 CLCA2Q9UQC9 943 aa23.83■■□□□ 1.41
SHMT1-206ENST00000579558 EME2A4GXA9 379 aaPredicted RBP23.82■■□□□ 1.4
SHMT1-206ENST00000579558 HACD1B0YJ81 288 aa23.82■■□□□ 1.4
SHMT1-206ENST00000579558 APOC4-APOC2K7ER74 178 aa23.82■■□□□ 1.4
SHMT1-206ENST00000579558 OPA1O60313 960 aa23.82■■□□□ 1.4
SHMT1-206ENST00000579558 MT-CYBP00156 380 aaPredicted RBP23.82■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms