RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 SLC25A51Q9H1U9 297 aa15.03■□□□□ -0
VPS39-210ENST00000568357 SPASTQ9UBP0 616 aa15.03■□□□□ -0
VPS39-210ENST00000568357 APOBEC3BQ9UH17 382 aaKnown RBP15.03■□□□□ -0
VPS39-210ENST00000568357 RPL26L1Q9UNX3 145 aaKnown RBP15.03■□□□□ -0
VPS39-210ENST00000568357 U3KQA8 63 aa15.03■□□□□ -0
VPS39-210ENST00000568357 TP53BP1Q12888 1972 aaPredicted RBP15.02■□□□□ -0
VPS39-210ENST00000568357 SHROOM3Q8TF72 1996 aa15.02■□□□□ -0
VPS39-210ENST00000568357 COL5A1P20908 1838 aaPredicted RBP15.02■□□□□ -0
VPS39-210ENST00000568357 CCDC66A2RUB6 948 aa15.02■□□□□ -0
VPS39-210ENST00000568357 FAM149AA5PLN7 773 aa15.02■□□□□ -0
VPS39-210ENST00000568357 EIF4E1BA6NMX2 242 aaKnown RBP15.02■□□□□ -0
VPS39-210ENST00000568357 ANKRD66B4E2M5 251 aa15.02■□□□□ -0
VPS39-210ENST00000568357 PSMD11O00231 422 aa15.02■□□□□ -0
VPS39-210ENST00000568357 RFPL3O75679 317 aa15.02■□□□□ -0
VPS39-210ENST00000568357 CLDN7O95471 211 aa15.02■□□□□ -0
VPS39-210ENST00000568357 CELA2BP08218 269 aaPredicted RBP15.02■□□□□ -0
VPS39-210ENST00000568357 HOXC4P09017 264 aaPredicted RBP15.02■□□□□ -0
VPS39-210ENST00000568357 C1SP09871 688 aa15.02■□□□□ -0
VPS39-210ENST00000568357 PYGMP11217 842 aa15.02■□□□□ -0
VPS39-210ENST00000568357 TSHRP16473 764 aa15.02■□□□□ -0
VPS39-210ENST00000568357 ACP1P24666 158 aa15.02■□□□□ -0
VPS39-210ENST00000568357 CD68P34810 354 aaPredicted RBP15.02■□□□□ -0
VPS39-210ENST00000568357 HK3P52790 923 aa15.02■□□□□ -0
VPS39-210ENST00000568357 CLDN6P56747 220 aa15.02■□□□□ -0
VPS39-210ENST00000568357 COPS2P61201 443 aa15.02■□□□□ -0
VPS39-210ENST00000568357 SMAD1Q15797 465 aaKnown RBP15.02■□□□□ -0
VPS39-210ENST00000568357 QPCTQ16769 361 aa15.02■□□□□ -0
VPS39-210ENST00000568357 DEFB133Q30KQ1 61 aa15.02■□□□□ -0
VPS39-210ENST00000568357 KDELC2Q7Z4H8 507 aa15.02■□□□□ -0
VPS39-210ENST00000568357 FAM181AQ8N9Y4 354 aa15.02■□□□□ -0
VPS39-210ENST00000568357 SPATA22Q8NHS9 363 aa15.02■□□□□ -0
VPS39-210ENST00000568357 OR1E3Q8WZA6 343 aa15.02■□□□□ -0
VPS39-210ENST00000568357 TRIB3Q96RU7 358 aa15.02■□□□□ -0
VPS39-210ENST00000568357 DUSP23Q9BVJ7 150 aa15.02■□□□□ -0
VPS39-210ENST00000568357 ABCG8Q9H221 673 aa15.02■□□□□ -0
VPS39-210ENST00000568357 C10orf88Q9H8K7 445 aa15.02■□□□□ -0
VPS39-210ENST00000568357 GLOD4Q9HC38 313 aa15.02■□□□□ -0
VPS39-210ENST00000568357 MRPL40Q9NQ50 206 aaKnown RBP15.02■□□□□ -0
VPS39-210ENST00000568357 CD84Q9UIB8 345 aa15.02■□□□□ -0
VPS39-210ENST00000568357 CAPN8A6NHC0 703 aa15.01□□□□□ -0.01
VPS39-210ENST00000568357 LMO7DNF2Z398 122 aa15.01□□□□□ -0.01
VPS39-210ENST00000568357 CACNB4O00305 520 aaPredicted RBP15.01□□□□□ -0.01
VPS39-210ENST00000568357 TPP1O14773 563 aa15.01□□□□□ -0.01
VPS39-210ENST00000568357 YY2O15391 372 aa15.01□□□□□ -0.01
VPS39-210ENST00000568357 MT-CYBP00156 380 aaPredicted RBP15.01□□□□□ -0.01
VPS39-210ENST00000568357 ALPPL2P10696 532 aa15.01□□□□□ -0.01
VPS39-210ENST00000568357 CKMT1AP12532 417 aa15.01□□□□□ -0.01
VPS39-210ENST00000568357 CA4P22748 312 aa15.01□□□□□ -0.01
VPS39-210ENST00000568357 BLKP51451 505 aa15.01□□□□□ -0.01
VPS39-210ENST00000568357 STC1P52823 247 aa15.01□□□□□ -0.01
VPS39-210ENST00000568357 RWDD2BP57060 319 aa15.01□□□□□ -0.01
VPS39-210ENST00000568357 KIAA1024LP59773 190 aa15.01□□□□□ -0.01
VPS39-210ENST00000568357 GALNT3Q14435 633 aa15.01□□□□□ -0.01
VPS39-210ENST00000568357 TCEA2Q15560 299 aa15.01□□□□□ -0.01
VPS39-210ENST00000568357 HS1BP3Q53T59 392 aa15.01□□□□□ -0.01
VPS39-210ENST00000568357 OR56A4Q8NGH8 313 aa15.01□□□□□ -0.01
VPS39-210ENST00000568357 SCAMP4Q969E2 229 aa15.01□□□□□ -0.01
VPS39-210ENST00000568357 TBATAQ96M53 351 aa15.01□□□□□ -0.01
VPS39-210ENST00000568357 LYSMD1Q96S90 227 aa15.01□□□□□ -0.01
VPS39-210ENST00000568357 TEX101Q9BY14 249 aa15.01□□□□□ -0.01
VPS39-210ENST00000568357 OSBPL8Q9BZF1 889 aa15.01□□□□□ -0.01
VPS39-210ENST00000568357 WDR26Q9H7D7 661 aa15.01□□□□□ -0.01
VPS39-210ENST00000568357 FGF22Q9HCT0 170 aa15.01□□□□□ -0.01
VPS39-210ENST00000568357 KCTD5Q9NXV2 234 aa15.01□□□□□ -0.01
VPS39-210ENST00000568357 KLQ9UEF7 1012 aa15.01□□□□□ -0.01
VPS39-210ENST00000568357 AMFRQ9UKV5 643 aa15.01□□□□□ -0.01
VPS39-210ENST00000568357 PACSIN2Q9UNF0 486 aaPredicted RBP15.01□□□□□ -0.01
VPS39-210ENST00000568357 EFR3BQ9Y2G0 817 aa15.01□□□□□ -0.01
VPS39-210ENST00000568357 ADGRG1Q9Y653 693 aa15.01□□□□□ -0.01
VPS39-210ENST00000568357 DGKBQ9Y6T7 804 aa15.01□□□□□ -0.01
VPS39-210ENST00000568357 BPTFQ12830 3046 aa15□□□□□ -0.01
VPS39-210ENST00000568357 GOLGA6L6A8MZA4 724 aa15□□□□□ -0.01
VPS39-210ENST00000568357 APOC4-APOC2K7ER74 178 aa15□□□□□ -0.01
VPS39-210ENST00000568357 RASGRP1O95267 797 aa15□□□□□ -0.01
VPS39-210ENST00000568357 FTCDO95954 541 aa15□□□□□ -0.01
VPS39-210ENST00000568357 APOC2P02655 101 aa15□□□□□ -0.01
VPS39-210ENST00000568357 FUCA1P04066 466 aa15□□□□□ -0.01
VPS39-210ENST00000568357 ZNF30P17039 623 aa15□□□□□ -0.01
VPS39-210ENST00000568357 PTPN7P35236 360 aa15□□□□□ -0.01
VPS39-210ENST00000568357 GSDMDP57764 484 aa15□□□□□ -0.01
VPS39-210ENST00000568357 DAB2P98082 770 aa15□□□□□ -0.01
VPS39-210ENST00000568357 DPTQ07507 201 aa15□□□□□ -0.01
VPS39-210ENST00000568357 ILKQ13418 452 aa15□□□□□ -0.01
VPS39-210ENST00000568357 PCSK7Q16549 785 aa15□□□□□ -0.01
VPS39-210ENST00000568357 ZCCHC8Q6NZY4 707 aaKnown RBP15□□□□□ -0.01
VPS39-210ENST00000568357 PEX26Q7Z412 305 aa15□□□□□ -0.01
VPS39-210ENST00000568357 HEATR4Q86WZ0 1026 aa15□□□□□ -0.01
VPS39-210ENST00000568357 ZNF567Q8N184 647 aa15□□□□□ -0.01
VPS39-210ENST00000568357 ATL2Q8NHH9 583 aa15□□□□□ -0.01
VPS39-210ENST00000568357 MDM1Q8TC05 714 aa15□□□□□ -0.01
VPS39-210ENST00000568357 HTR3CQ8WXA8 447 aa15□□□□□ -0.01
VPS39-210ENST00000568357 EID2BQ96D98 161 aa15□□□□□ -0.01
VPS39-210ENST00000568357 PDXPQ96GD0 296 aa15□□□□□ -0.01
VPS39-210ENST00000568357 QKIQ96PU8 341 aaKnown RBP eCLIP15□□□□□ -0.01
VPS39-210ENST00000568357 AGAP2Q99490 1192 aa15□□□□□ -0.01
VPS39-210ENST00000568357 MLPHQ9BV36 600 aaPredicted RBP15□□□□□ -0.01
VPS39-210ENST00000568357 ADGRE3Q9BY15 652 aa15□□□□□ -0.01
VPS39-210ENST00000568357 UBP1Q9NZI7 540 aa15□□□□□ -0.01
VPS39-210ENST00000568357 RAXQ9Y2V3 346 aa15□□□□□ -0.01
VPS39-210ENST00000568357 LRRK1Q38SD2 2015 aa15□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms