RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 JMJD6Q6NYC1 403 aaPredicted RBP5.16□□□□□ -1.58
VPS35-205ENST00000563984 CASC4Q6P4E1 433 aa5.16□□□□□ -1.58
VPS35-205ENST00000563984 FAM171BQ6P995 826 aa5.16□□□□□ -1.58
VPS35-205ENST00000563984 KLHL24Q6TFL4 600 aa5.16□□□□□ -1.58
VPS35-205ENST00000563984 ZNF852Q6ZMS4 543 aa5.16□□□□□ -1.58
VPS35-205ENST00000563984 CACNA2D4Q7Z3S7 1137 aa5.16□□□□□ -1.58
VPS35-205ENST00000563984 ASPGQ86U10 573 aa5.16□□□□□ -1.58
VPS35-205ENST00000563984 PHC2Q8IXK0 858 aa5.16□□□□□ -1.58
VPS35-205ENST00000563984 SH2D3CQ8N5H7 860 aa5.16□□□□□ -1.58
VPS35-205ENST00000563984 CEP112Q8N8E3 955 aa5.16□□□□□ -1.58
VPS35-205ENST00000563984 SLC24A4Q8NFF2 622 aa5.16□□□□□ -1.58
VPS35-205ENST00000563984 TTLQ8NG68 377 aa5.16□□□□□ -1.58
VPS35-205ENST00000563984 OR7G1Q8NGA0 311 aa5.16□□□□□ -1.58
VPS35-205ENST00000563984 URGCPQ8TCY9 931 aa5.16□□□□□ -1.58
VPS35-205ENST00000563984 BRIX1Q8TDN6 353 aaKnown RBP5.16□□□□□ -1.58
VPS35-205ENST00000563984 PIGOQ8TEQ8 1089 aa5.16□□□□□ -1.58
VPS35-205ENST00000563984 GANCQ8TET4 914 aa5.16□□□□□ -1.58
VPS35-205ENST00000563984 ASB12Q8WXK4 309 aa5.16□□□□□ -1.58
VPS35-205ENST00000563984 C1GALT1C1Q96EU7 318 aa5.16□□□□□ -1.58
VPS35-205ENST00000563984 BRIP1Q9BX63 1249 aa5.16□□□□□ -1.58
VPS35-205ENST00000563984 MRPL1Q9BYD6 325 aaKnown RBP5.16□□□□□ -1.58
VPS35-205ENST00000563984 TINAGL1Q9GZM7 467 aaPredicted RBP5.16□□□□□ -1.58
VPS35-205ENST00000563984 TASP1Q9H6P5 420 aa5.16□□□□□ -1.58
VPS35-205ENST00000563984 PREBQ9HCU5 417 aa5.16□□□□□ -1.58
VPS35-205ENST00000563984 DMAP1Q9NPF5 467 aaPredicted RBP5.16□□□□□ -1.58
VPS35-205ENST00000563984 KRT84Q9NSB2 600 aa5.16□□□□□ -1.58
VPS35-205ENST00000563984 SNTG1Q9NSN8 517 aa5.16□□□□□ -1.58
VPS35-205ENST00000563984 PKD2L2Q9NZM6 624 aa5.16□□□□□ -1.58
VPS35-205ENST00000563984 ADD3Q9UEY8 706 aaKnown RBP5.16□□□□□ -1.58
VPS35-205ENST00000563984 SEC63Q9UGP8 760 aaKnown RBP5.16□□□□□ -1.58
VPS35-205ENST00000563984 CDC23Q9UJX2 597 aa5.16□□□□□ -1.58
VPS35-205ENST00000563984 AGAP1Q9UPQ3 857 aa5.16□□□□□ -1.58
VPS35-205ENST00000563984 SLC8A2Q9UPR5 921 aa5.16□□□□□ -1.58
VPS35-205ENST00000563984 FAM32AQ9Y421 112 aaKnown RBP5.16□□□□□ -1.58
VPS35-205ENST00000563984 PTPRCP08575 1304 aa5.16□□□□□ -1.58
VPS35-205ENST00000563984 CCNB3Q8WWL7 1395 aa5.16□□□□□ -1.58
VPS35-205ENST00000563984 CCDC144AA2RUR9 1427 aa5.15□□□□□ -1.58
VPS35-205ENST00000563984 RNF103-CHMP3A0A140T963 221 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 GOLGA8KD6RF30 607 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 E9PBE3 544 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 H3BUI4 141 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 RNF103O00237 685 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 TPP1O14773 563 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 ATP2A1O14983 1001 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 TP73O15350 636 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 IRAK2O43187 625 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 ZSCAN12O43309 604 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 PROP1O75360 226 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 SURF6O75683 361 aaKnown RBP5.15□□□□□ -1.59
VPS35-205ENST00000563984 CDC123O75794 336 aaPredicted RBP5.15□□□□□ -1.59
VPS35-205ENST00000563984 SGPL1O95470 568 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 IGLV2-14P01704 120 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 DLDP09622 509 aaKnown RBP5.15□□□□□ -1.59
VPS35-205ENST00000563984 TPBGLP0DKB5 382 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 CHRNB1P11230 501 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 CYP2C9P11712 490 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 POLR2CP19387 275 aaPredicted RBP5.15□□□□□ -1.59
VPS35-205ENST00000563984 ITGALP20701 1170 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 RFC2P35250 354 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 HOXD13P35453 343 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 ME1P48163 572 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 STARP49675 285 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 MAPK10P53779 464 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 ARL4CP56559 192 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 STARD6P59095 220 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 EIF3EP60228 445 aaKnown RBP5.15□□□□□ -1.59
VPS35-205ENST00000563984 ARF3P61204 181 aaPredicted RBP5.15□□□□□ -1.59
VPS35-205ENST00000563984 ARF1P84077 181 aaKnown RBP5.15□□□□□ -1.59
VPS35-205ENST00000563984 IFFO1Q0D2I5 559 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 C17orf67Q0P5P2 114 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 CDC20Q12834 499 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 CALCOCO2Q13137 446 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 LASP1Q14847 261 aaKnown RBP5.15□□□□□ -1.59
VPS35-205ENST00000563984 EFHC1Q5JVL4 640 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 DGKKQ5KSL6 1271 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 LIN9Q5TKA1 542 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 SHEQ5VZ18 495 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 SLC25A24Q6NUK1 477 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 TAF2Q6P1X5 1199 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 TRIM72Q6ZMU5 477 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 TPGS1Q6ZTW0 290 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 PIK3AP1Q6ZUJ8 805 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 TMTC3Q6ZXV5 915 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 PIWIL3Q7Z3Z3 882 aaKnown RBP5.15□□□□□ -1.59
VPS35-205ENST00000563984 PPP1R32Q7Z5V6 425 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 SLFN11Q7Z7L1 901 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 CCDC25Q86WR0 208 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 LRRC6Q86X45 466 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 PPP1R3BQ86XI6 285 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 CDKL3Q8IVW4 592 aaPredicted RBP5.15□□□□□ -1.59
VPS35-205ENST00000563984 THNSL1Q8IYQ7 743 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 PYROXD2Q8N2H3 581 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 BBS5Q8N3I7 341 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 HDDC3Q8N4P3 179 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 PLD5Q8N7P1 536 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 PSD4Q8NDX1 1056 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 OR10Z1Q8NGY1 313 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 ANGPTL6Q8NI99 470 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 ZNF461Q8TAF7 563 aa5.15□□□□□ -1.59
VPS35-205ENST00000563984 PHOSPHO2Q8TCD6 241 aa5.15□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms