RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 H2AFVQ71UI9 128 aa10.21□□□□□ -0.77
LDLR-214ENST00000560628 TECPR1Q7Z6L1 1165 aa10.21□□□□□ -0.77
LDLR-214ENST00000560628 NRROSQ86YC3 692 aa10.21□□□□□ -0.77
LDLR-214ENST00000560628 FBXO39Q8N4B4 442 aa10.21□□□□□ -0.77
LDLR-214ENST00000560628 PQLC3Q8N755 202 aa10.21□□□□□ -0.77
LDLR-214ENST00000560628 CCNYQ8ND76 341 aa10.21□□□□□ -0.77
LDLR-214ENST00000560628 OR6C4Q8NGE1 309 aa10.21□□□□□ -0.77
LDLR-214ENST00000560628 OR8K1Q8NGG5 319 aa10.21□□□□□ -0.77
LDLR-214ENST00000560628 CTNNBL1Q8WYA6 563 aaPredicted RBP10.21□□□□□ -0.77
LDLR-214ENST00000560628 SPOCK2Q92563 424 aa10.21□□□□□ -0.77
LDLR-214ENST00000560628 RAPGEF5Q92565 580 aa10.21□□□□□ -0.77
LDLR-214ENST00000560628 MAML1Q92585 1016 aa10.21□□□□□ -0.77
LDLR-214ENST00000560628 SCAMP4Q969E2 229 aa10.21□□□□□ -0.77
LDLR-214ENST00000560628 ABCG8Q9H221 673 aa10.21□□□□□ -0.77
LDLR-214ENST00000560628 DEF6Q9H4E7 631 aa10.21□□□□□ -0.77
LDLR-214ENST00000560628 LRIT1Q9P2V4 623 aa10.21□□□□□ -0.77
LDLR-214ENST00000560628 UVRAGQ9P2Y5 699 aa10.21□□□□□ -0.77
LDLR-214ENST00000560628 TMEM98Q9Y2Y6 226 aa10.21□□□□□ -0.77
LDLR-214ENST00000560628 PPIL1Q9Y3C6 166 aa10.21□□□□□ -0.77
LDLR-214ENST00000560628 PLEKHM1Q9Y4G2 1056 aa10.21□□□□□ -0.77
LDLR-214ENST00000560628 PCDHGA8Q9Y5G5 932 aa10.21□□□□□ -0.77
LDLR-214ENST00000560628 ANKRD36A6QL64 1941 aa10.21□□□□□ -0.78
LDLR-214ENST00000560628 KIF26BQ2KJY2 2108 aa10.21□□□□□ -0.78
LDLR-214ENST00000560628 CDRT15L2A8MXV6 281 aa10.2□□□□□ -0.78
LDLR-214ENST00000560628 D6RAR5 112 aa10.2□□□□□ -0.78
LDLR-214ENST00000560628 PLD2O14939 933 aa10.2□□□□□ -0.78
LDLR-214ENST00000560628 FZD6O60353 706 aa10.2□□□□□ -0.78
LDLR-214ENST00000560628 JCHAINP01591 159 aa10.2□□□□□ -0.78
LDLR-214ENST00000560628 FGF1P05230 155 aa10.2□□□□□ -0.78
LDLR-214ENST00000560628 TPM3P06753 285 aa10.2□□□□□ -0.78
LDLR-214ENST00000560628 KRT10P13645 584 aa10.2□□□□□ -0.78
LDLR-214ENST00000560628 CCNB1P14635 433 aa10.2□□□□□ -0.78
LDLR-214ENST00000560628 GLB1P16278 677 aa10.2□□□□□ -0.78
LDLR-214ENST00000560628 CCNCP24863 283 aa10.2□□□□□ -0.78
LDLR-214ENST00000560628 ATRXP46100 2492 aa10.2□□□□□ -0.78
LDLR-214ENST00000560628 MAZP56270 477 aaKnown RBP10.2□□□□□ -0.78
LDLR-214ENST00000560628 PTSQ03393 145 aa10.2□□□□□ -0.78
LDLR-214ENST00000560628 NIPAL4Q0D2K0 466 aa10.2□□□□□ -0.78
LDLR-214ENST00000560628 HLTFQ14527 1009 aaKnown RBP eCLIP10.2□□□□□ -0.78
LDLR-214ENST00000560628 SLC18A3Q16572 532 aa10.2□□□□□ -0.78
LDLR-214ENST00000560628 TSR1Q2NL82 804 aaKnown RBP10.2□□□□□ -0.78
LDLR-214ENST00000560628 ASTE1Q2TB18 679 aaPredicted RBP10.2□□□□□ -0.78
LDLR-214ENST00000560628 CERCAMQ5T4B2 595 aa10.2□□□□□ -0.78
LDLR-214ENST00000560628 LRRC66Q68CR7 880 aa10.2□□□□□ -0.78
LDLR-214ENST00000560628 TIGD7Q6NT04 549 aaPredicted RBP10.2□□□□□ -0.78
LDLR-214ENST00000560628 IGF2-ASQ6U949 168 aa10.2□□□□□ -0.78
LDLR-214ENST00000560628 USP53Q70EK8 1073 aa10.2□□□□□ -0.78
LDLR-214ENST00000560628 RAB11FIP2Q7L804 512 aa10.2□□□□□ -0.78
LDLR-214ENST00000560628 TRIM74Q86UV6 250 aa10.2□□□□□ -0.78
LDLR-214ENST00000560628 JAMLQ86YT9 394 aa10.2□□□□□ -0.78
LDLR-214ENST00000560628 MAP7D3Q8IWC1 876 aa10.2□□□□□ -0.78
LDLR-214ENST00000560628 NDUFAF2Q8N183 169 aa10.2□□□□□ -0.78
LDLR-214ENST00000560628 ARL14Q8N4G2 192 aa10.2□□□□□ -0.78
LDLR-214ENST00000560628 GPBAR1Q8TDU6 330 aa10.2□□□□□ -0.78
LDLR-214ENST00000560628 ZDHHC1Q8WTX9 485 aa10.2□□□□□ -0.78
LDLR-214ENST00000560628 SLC39A7Q92504 469 aa10.2□□□□□ -0.78
LDLR-214ENST00000560628 AP2M1Q96CW1 435 aa10.2□□□□□ -0.78
LDLR-214ENST00000560628 TSGA13Q96PP4 275 aa10.2□□□□□ -0.78
LDLR-214ENST00000560628 MCCC1Q96RQ3 725 aaPredicted RBP10.2□□□□□ -0.78
LDLR-214ENST00000560628 AGAP2Q99490 1192 aa10.2□□□□□ -0.78
LDLR-214ENST00000560628 CHP1Q99653 195 aa10.2□□□□□ -0.78
LDLR-214ENST00000560628 FRMD8Q9BZ67 464 aaPredicted RBP10.2□□□□□ -0.78
LDLR-214ENST00000560628 STRADBQ9C0K7 418 aa10.2□□□□□ -0.78
LDLR-214ENST00000560628 POLR1EQ9GZS1 481 aaKnown RBP10.2□□□□□ -0.78
LDLR-214ENST00000560628 KCTD5Q9NXV2 234 aa10.2□□□□□ -0.78
LDLR-214ENST00000560628 TAAR2Q9P1P5 351 aa10.2□□□□□ -0.78
LDLR-214ENST00000560628 APPL1Q9UKG1 709 aa10.2□□□□□ -0.78
LDLR-214ENST00000560628 SUFUQ9UMX1 484 aa10.2□□□□□ -0.78
LDLR-214ENST00000560628 NBEAQ8NFP9 2946 aa10.2□□□□□ -0.78
LDLR-214ENST00000560628 SHROOM3Q8TF72 1996 aa10.19□□□□□ -0.78
LDLR-214ENST00000560628 TRBV23OR9-2A0A075B6M9 112 aa10.19□□□□□ -0.78
LDLR-214ENST00000560628 A0A0J9YYE9 177 aa10.19□□□□□ -0.78
LDLR-214ENST00000560628 TMX2-CTNND1H3BSU7 103 aa10.19□□□□□ -0.78
LDLR-214ENST00000560628 PSMD11O00231 422 aa10.19□□□□□ -0.78
LDLR-214ENST00000560628 ATXN7O15265 892 aaPredicted RBP10.19□□□□□ -0.78
LDLR-214ENST00000560628 INPP4BO15327 924 aa10.19□□□□□ -0.78
LDLR-214ENST00000560628 B4GAT1O43505 415 aa10.19□□□□□ -0.78
LDLR-214ENST00000560628 AKR1B10O60218 316 aa10.19□□□□□ -0.78
LDLR-214ENST00000560628 CLDN7O95471 211 aa10.19□□□□□ -0.78
LDLR-214ENST00000560628 ECEL1O95672 775 aa10.19□□□□□ -0.78
LDLR-214ENST00000560628 PRLP01236 227 aa10.19□□□□□ -0.78
LDLR-214ENST00000560628 TRBC1P01850 177 aa10.19□□□□□ -0.78
LDLR-214ENST00000560628 HLA-DQB2P05538 268 aa10.19□□□□□ -0.78
LDLR-214ENST00000560628 KRT7P08729 469 aa10.19□□□□□ -0.78
LDLR-214ENST00000560628 KDELR1P24390 212 aa10.19□□□□□ -0.78
LDLR-214ENST00000560628 ALDH4A1P30038 563 aa10.19□□□□□ -0.78
LDLR-214ENST00000560628 UGT1A5P35504 534 aa10.19□□□□□ -0.78
LDLR-214ENST00000560628 ADCY8P40145 1251 aa10.19□□□□□ -0.78
LDLR-214ENST00000560628 TMPRSS3P57727 454 aa10.19□□□□□ -0.78
LDLR-214ENST00000560628 OR1D5P58170 312 aa10.19□□□□□ -0.78
LDLR-214ENST00000560628 B4GALNT1Q00973 533 aa10.19□□□□□ -0.78
LDLR-214ENST00000560628 CTBSQ01459 385 aa10.19□□□□□ -0.78
LDLR-214ENST00000560628 DPTQ07507 201 aa10.19□□□□□ -0.78
LDLR-214ENST00000560628 ILF3Q12906 894 aaKnown RBP eCLIP10.19□□□□□ -0.784e-8■□□□□ 8.8
LDLR-214ENST00000560628 AMZ1Q400G9 498 aa10.19□□□□□ -0.78
LDLR-214ENST00000560628 SLC30A9Q6PML9 568 aa10.19□□□□□ -0.78
LDLR-214ENST00000560628 MARK2Q7KZI7 788 aaKnown RBP10.19□□□□□ -0.78
LDLR-214ENST00000560628 TMPRSS9Q7Z410 1059 aa10.19□□□□□ -0.78
LDLR-214ENST00000560628 SPRED1Q7Z699 444 aa10.19□□□□□ -0.78
LDLR-214ENST00000560628 LPCAT1Q8NF37 534 aa10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms