RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 PTK2BQ14289 1009 aa7.27□□□□□ -1.25
VPS13C-206ENST00000558338 FASTKQ14296 549 aaKnown RBP7.27□□□□□ -1.25
VPS13C-206ENST00000558338 MBTPS1Q14703 1052 aa7.27□□□□□ -1.25
VPS13C-206ENST00000558338 MMEL1Q495T6 779 aa7.27□□□□□ -1.25
VPS13C-206ENST00000558338 PPM1LQ5SGD2 360 aa7.27□□□□□ -1.25
VPS13C-206ENST00000558338 ZNF678Q5SXM1 525 aa7.27□□□□□ -1.25
VPS13C-206ENST00000558338 OGFRL1Q5TC84 451 aaPredicted RBP7.27□□□□□ -1.25
VPS13C-206ENST00000558338 KLHDC10Q6PID8 442 aa7.27□□□□□ -1.25
VPS13C-206ENST00000558338 CHST9Q7L1S5 443 aa7.27□□□□□ -1.25
VPS13C-206ENST00000558338 EFL1Q7Z2Z2 1120 aaKnown RBP7.27□□□□□ -1.25
VPS13C-206ENST00000558338 RNF135Q8IUD6 432 aa7.27□□□□□ -1.25
VPS13C-206ENST00000558338 LGI2Q8N0V4 545 aa7.27□□□□□ -1.25
VPS13C-206ENST00000558338 CACTIN-AS1Q8N1I8 211 aa7.27□□□□□ -1.25
VPS13C-206ENST00000558338 PGBD5Q8N414 524 aa7.27□□□□□ -1.25
VPS13C-206ENST00000558338 ATAD1Q8NBU5 361 aa7.27□□□□□ -1.25
VPS13C-206ENST00000558338 PLD4Q96BZ4 506 aa7.27□□□□□ -1.25
VPS13C-206ENST00000558338 SGF29Q96ES7 293 aa7.27□□□□□ -1.25
VPS13C-206ENST00000558338 PPP1R36Q96LQ0 422 aa7.27□□□□□ -1.25
VPS13C-206ENST00000558338 CDRT15Q96T59 188 aa7.27□□□□□ -1.25
VPS13C-206ENST00000558338 TCF12Q99081 682 aa7.27□□□□□ -1.25
VPS13C-206ENST00000558338 DDX50Q9BQ39 737 aaKnown RBP7.27□□□□□ -1.25
VPS13C-206ENST00000558338 LBHD1Q9BQE6 289 aaPredicted RBP7.27□□□□□ -1.25
VPS13C-206ENST00000558338 SLC25A23Q9BV35 468 aa7.27□□□□□ -1.25
VPS13C-206ENST00000558338 CINPQ9BW66 212 aaPredicted RBP7.27□□□□□ -1.25
VPS13C-206ENST00000558338 ERVK-6Q9BXR3 956 aa7.27□□□□□ -1.25
VPS13C-206ENST00000558338 CCDC68Q9H2F9 335 aa7.27□□□□□ -1.25
VPS13C-206ENST00000558338 GSTO2Q9H4Y5 243 aa7.27□□□□□ -1.25
VPS13C-206ENST00000558338 TFB2MQ9H5Q4 396 aaKnown RBP7.27□□□□□ -1.25
VPS13C-206ENST00000558338 STARD7Q9NQZ5 370 aa7.27□□□□□ -1.25
VPS13C-206ENST00000558338 UBA2Q9UBT2 640 aaPredicted RBP7.27□□□□□ -1.25
VPS13C-206ENST00000558338 SARDHQ9UL12 918 aa7.27□□□□□ -1.25
VPS13C-206ENST00000558338 ABT1Q9ULW3 272 aaKnown RBP7.27□□□□□ -1.25
VPS13C-206ENST00000558338 DTNAQ9Y4J8 743 aa7.27□□□□□ -1.25
VPS13C-206ENST00000558338 TRAF6Q9Y4K3 522 aa7.27□□□□□ -1.25
VPS13C-206ENST00000558338 LOC100996750A0A140TA64 210 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 A0A1W2PQ45 241 aaPredicted RBP7.26□□□□□ -1.25
VPS13C-206ENST00000558338 A0A1W2PQY0 241 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 SYCE1LA8MT33 242 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 H3BNX3 289 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 PSMD12O00232 456 aaPredicted RBP7.26□□□□□ -1.25
VPS13C-206ENST00000558338 AURKAO14965 403 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 TBC1D4O60343 1298 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 VPS4BO75351 444 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 CLDN11O75508 207 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 SKAP2O75563 359 aaPredicted RBP7.26□□□□□ -1.25
VPS13C-206ENST00000558338 SRP72O76094 671 aaKnown RBP7.26□□□□□ -1.25
VPS13C-206ENST00000558338 GOT2P00505 430 aaKnown RBP7.26□□□□□ -1.25
VPS13C-206ENST00000558338 PYGLP06737 847 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 LYNP07948 512 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 LINGO3P0C6S8 592 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 PIM1P11309 404 aaPredicted RBP7.26□□□□□ -1.25
VPS13C-206ENST00000558338 HNRNPLP14866 589 aaKnown RBP eCLIP7.26□□□□□ -1.25
VPS13C-206ENST00000558338 ELNP15502 786 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 CD1DP15813 335 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 ZNF37AP17032 561 aaPredicted RBP7.26□□□□□ -1.25
VPS13C-206ENST00000558338 PEX2P28328 305 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 ATP5C1P36542 298 aaKnown RBP7.26□□□□□ -1.25
VPS13C-206ENST00000558338 TUFMP49411 452 aaKnown RBP7.26□□□□□ -1.25
VPS13C-206ENST00000558338 STC1P52823 247 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 THOP1P52888 689 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 CDKN2DP55273 166 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 OXCT1P55809 520 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 SH3BGRP55822 239 aaPredicted RBP7.26□□□□□ -1.25
VPS13C-206ENST00000558338 ARPP19P56211 112 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 ATP6V0D1P61421 351 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 GNA12Q03113 381 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 TRAP1Q12931 704 aaKnown RBP7.26□□□□□ -1.25
VPS13C-206ENST00000558338 GRAMD1BQ3KR37 738 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 ZNF789Q5FWF6 425 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 GPR158Q5T848 1215 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 RASIP1Q5U651 963 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 IRAK1BP1Q5VVH5 260 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 TMEM198Q66K66 360 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 NADSYN1Q6IA69 706 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 PRMT9Q6P2P2 845 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 RAVER1Q8IY67 606 aaKnown RBP7.26□□□□□ -1.25
VPS13C-206ENST00000558338 CLYBLQ8N0X4 340 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 SPATA6LQ8N4H0 392 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 ZNF454Q8N9F8 522 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 ADCY4Q8NFM4 1077 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 OR4L1Q8NH43 312 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 BLOC1S5Q8TDH9 187 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 UCMAQ8WVF2 138 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 SEPT8Q92599 483 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 ASB9Q96DX5 294 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 DNAJC1Q96KC8 554 aaKnown RBP7.26□□□□□ -1.25
VPS13C-206ENST00000558338 GBP5Q96PP8 586 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 CENPKQ9BS16 269 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 AARSD1Q9BTE6 412 aaKnown RBP7.26□□□□□ -1.25
VPS13C-206ENST00000558338 KRTAP4-6Q9BYQ5 205 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 NACA2Q9H009 215 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 UNC93B1Q9H1C4 597 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 ALG9Q9H6U8 611 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 CYP4F12Q9HCS2 524 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 PFDN4Q9NQP4 134 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 NLE1Q9NVX2 485 aaPredicted RBP7.26□□□□□ -1.25
VPS13C-206ENST00000558338 MARCH5Q9NX47 278 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 CXXC1Q9P0U4 656 aaPredicted RBP7.26□□□□□ -1.25
VPS13C-206ENST00000558338 SRRDQ9UH36 339 aa7.26□□□□□ -1.25
VPS13C-206ENST00000558338 ADAMTS6Q9UKP5 1117 aa7.26□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms