RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 NR0B2Q15466 257 aa8.67□□□□□ -1.02
USP3-208ENST00000558285 CCDC157Q569K6 752 aa8.67□□□□□ -1.02
USP3-208ENST00000558285 LRRC73Q5JTD7 316 aa8.67□□□□□ -1.02
USP3-208ENST00000558285 KAZNQ674X7 775 aa8.67□□□□□ -1.02
USP3-208ENST00000558285 ENPP7Q6UWV6 458 aa8.67□□□□□ -1.02
USP3-208ENST00000558285 RAB44Q7Z6P3 723 aaPredicted RBP8.67□□□□□ -1.02
USP3-208ENST00000558285 NLRP8Q86W28 1048 aa8.67□□□□□ -1.02
USP3-208ENST00000558285 FAM181AQ8N9Y4 354 aa8.67□□□□□ -1.02
USP3-208ENST00000558285 ZNF548Q8NEK5 533 aaPredicted RBP8.67□□□□□ -1.02
USP3-208ENST00000558285 BAHD1Q8TBE0 780 aaPredicted RBP8.67□□□□□ -1.02
USP3-208ENST00000558285 LMX1AQ8TE12 382 aa8.67□□□□□ -1.02
USP3-208ENST00000558285 MCCC1Q96RQ3 725 aaPredicted RBP8.67□□□□□ -1.02
USP3-208ENST00000558285 KLF6Q99612 283 aaPredicted RBP8.67□□□□□ -1.02
USP3-208ENST00000558285 MLPHQ9BV36 600 aaPredicted RBP8.67□□□□□ -1.02
USP3-208ENST00000558285 TDRD1Q9BXT4 1180 aaKnown RBP8.67□□□□□ -1.02
USP3-208ENST00000558285 FUT8Q9BYC5 575 aa8.67□□□□□ -1.02
USP3-208ENST00000558285 SLC25A51Q9H1U9 297 aa8.67□□□□□ -1.02
USP3-208ENST00000558285 GPR27Q9NS67 375 aa8.67□□□□□ -1.02
USP3-208ENST00000558285 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP8.67□□□□□ -1.022e-6■■■■■ 41.4
USP3-208ENST00000558285 HACD3Q9P035 362 aa8.67□□□□□ -1.02
USP3-208ENST00000558285 B4GALT6Q9UBX8 382 aa8.67□□□□□ -1.02
USP3-208ENST00000558285 PCDHA3Q9Y5H8 950 aa8.67□□□□□ -1.02
USP3-208ENST00000558285 CACNA1AO00555 2505 aa8.67□□□□□ -1.02
USP3-208ENST00000558285 A0A0J9YYE9 177 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 POM121BA6NF01 834 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 CAPN8A6NHC0 703 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 USP27XA6NNY8 438 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 LMO7DNF2Z398 122 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 TMX2-CTNND1H3BSU7 103 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 H7C0C1 242 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 KCNK1O00180 336 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 SDC3O75056 442 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 PEX11BO96011 259 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 TRBC1P01850 177 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 JUPP14923 745 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 ACP1P24666 158 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 PTPN7P35236 360 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 IGFALSP35858 605 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 GPR1P46091 355 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 RGRP47804 291 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 ATP5OP48047 213 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 SRP54P61011 504 aaKnown RBP8.66□□□□□ -1.02
USP3-208ENST00000558285 ILF3Q12906 894 aaKnown RBP eCLIP8.66□□□□□ -1.02
USP3-208ENST00000558285 ZKSCAN8Q15776 578 aaPredicted RBP8.66□□□□□ -1.02
USP3-208ENST00000558285 WSCD2Q2TBF2 565 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 TEX44Q53QW1 395 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 PRRT3Q5FWE3 981 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 SEL1L2Q5TEA6 688 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 DENND2CQ68D51 928 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 RAET1GQ6H3X3 334 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 MFSD7Q6UXD7 560 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 BBS12Q6ZW61 710 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 HDXQ7Z353 690 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 HID1Q8IV36 788 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 CACTIN-AS1Q8N1I8 211 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 AVL9Q8NBF6 648 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 TP53I13Q8NBR0 393 aaPredicted RBP8.66□□□□□ -1.02
USP3-208ENST00000558285 LPCAT1Q8NF37 534 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 OR56A4Q8NGH8 313 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 CAMK1GQ96NX5 476 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 OLFM3Q96PB7 478 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 LGMNQ99538 433 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 SCNM1Q9BWG6 230 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 FSD1LQ9BXM9 530 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 GSDMCQ9BYG8 508 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 FRMD8P1Q9BZ68 369 aaPredicted RBP8.66□□□□□ -1.02
USP3-208ENST00000558285 TRABDQ9H4I3 376 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 NPDC1Q9NQX5 325 aaPredicted RBP8.66□□□□□ -1.02
USP3-208ENST00000558285 GGT7Q9UJ14 662 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 CA5BQ9Y2D0 317 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 AAR2Q9Y312 384 aaKnown RBP8.66□□□□□ -1.02
USP3-208ENST00000558285 PPIL1Q9Y3C6 166 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 SLCO1B1Q9Y6L6 691 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 DGKBQ9Y6T7 804 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 NUMA1Q14980 2115 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 hCG_1818297A0A087WSY0 165 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 C1orf232A0A0U1RR37 186 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 ANKRD66B4E2M5 251 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 MUSKO15146 869 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 RAD51BO15315 384 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 FFAR2O15552 330 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 ZSCAN12O43309 604 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 GAS8O95995 478 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 EPOP01588 193 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 HLA-DQB2P05538 268 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 CKMT1AP12532 417 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 SLC2A4P14672 509 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 CD86P42081 329 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 HK3P52790 923 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 PDE1BQ01064 536 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 DSC2Q02487 901 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 CDK18Q07002 472 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 DPTQ07507 201 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 TRAF2Q12933 501 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 MPP3Q13368 585 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 FGL2Q14314 439 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 CNGA3Q16281 694 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 TAZQ16635 292 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 PRAMEF14Q5SWL7 426 aa8.66□□□□□ -1.02
USP3-208ENST00000558285 PDPK2PQ6A1A2 396 aa8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms