RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 CALR3Q96L12 384 aaKnown RBP10.27□□□□□ -0.77
CCDC88C-206ENST00000553437 TRIB3Q96RU7 358 aa10.27□□□□□ -0.77
CCDC88C-206ENST00000553437 LYSMD1Q96S90 227 aa10.27□□□□□ -0.77
CCDC88C-206ENST00000553437 BOCQ9BWV1 1114 aa10.27□□□□□ -0.77
CCDC88C-206ENST00000553437 TEX101Q9BY14 249 aa10.27□□□□□ -0.77
CCDC88C-206ENST00000553437 SLC13A1Q9BZW2 595 aa10.27□□□□□ -0.77
CCDC88C-206ENST00000553437 SLC25A51Q9H1U9 297 aa10.27□□□□□ -0.77
CCDC88C-206ENST00000553437 WDR26Q9H7D7 661 aa10.27□□□□□ -0.77
CCDC88C-206ENST00000553437 USP29Q9HBJ7 922 aa10.27□□□□□ -0.77
CCDC88C-206ENST00000553437 FGF22Q9HCT0 170 aa10.27□□□□□ -0.77
CCDC88C-206ENST00000553437 HAUS2Q9NVX0 235 aa10.27□□□□□ -0.77
CCDC88C-206ENST00000553437 KCTD5Q9NXV2 234 aa10.27□□□□□ -0.77
CCDC88C-206ENST00000553437 IMPACTQ9P2X3 320 aa10.27□□□□□ -0.77
CCDC88C-206ENST00000553437 KLQ9UEF7 1012 aa10.27□□□□□ -0.77
CCDC88C-206ENST00000553437 ZMIZ1Q9ULJ6 1067 aa10.27□□□□□ -0.77
CCDC88C-206ENST00000553437 PCDHA3Q9Y5H8 950 aa10.27□□□□□ -0.77
CCDC88C-206ENST00000553437 ARID1BQ8NFD5 2236 aaPredicted RBP10.26□□□□□ -0.77
CCDC88C-206ENST00000553437 IGF2RP11717 2491 aa10.26□□□□□ -0.77
CCDC88C-206ENST00000553437 A0A0U1RQJ8 604 aa10.26□□□□□ -0.77
CCDC88C-206ENST00000553437 TRABD2BA6NFA1 517 aa10.26□□□□□ -0.77
CCDC88C-206ENST00000553437 CACNB4O00305 520 aaPredicted RBP10.26□□□□□ -0.77
CCDC88C-206ENST00000553437 SOD1P00441 154 aa10.26□□□□□ -0.77
CCDC88C-206ENST00000553437 TNFP01375 233 aa10.26□□□□□ -0.77
CCDC88C-206ENST00000553437 FUCA1P04066 466 aa10.26□□□□□ -0.77
CCDC88C-206ENST00000553437 GP1BAP07359 652 aa10.26□□□□□ -0.77
CCDC88C-206ENST00000553437 ANXA6P08133 673 aa10.26□□□□□ -0.77
CCDC88C-206ENST00000553437 ZNF30P17039 623 aa10.26□□□□□ -0.77
CCDC88C-206ENST00000553437 TGM2P21980 687 aa10.26□□□□□ -0.77
CCDC88C-206ENST00000553437 PTPN3P26045 913 aa10.26□□□□□ -0.77
CCDC88C-206ENST00000553437 CD68P34810 354 aaPredicted RBP10.26□□□□□ -0.77
CCDC88C-206ENST00000553437 CTNNA1P35221 906 aaKnown RBP10.26□□□□□ -0.77
CCDC88C-206ENST00000553437 EPHB1P54762 984 aa10.26□□□□□ -0.77
CCDC88C-206ENST00000553437 E2F1Q01094 437 aa10.26□□□□□ -0.77
CCDC88C-206ENST00000553437 WASHC5Q12768 1159 aa10.26□□□□□ -0.77
CCDC88C-206ENST00000553437 TARDBPQ13148 414 aaKnown RBP eCLIP10.26□□□□□ -0.77
CCDC88C-206ENST00000553437 ARHGEF7Q14155 803 aa10.26□□□□□ -0.77
CCDC88C-206ENST00000553437 ELOCQ15369 112 aa10.26□□□□□ -0.77
CCDC88C-206ENST00000553437 PPP2R5EQ16537 467 aa10.26□□□□□ -0.77
CCDC88C-206ENST00000553437 TEX44Q53QW1 395 aa10.26□□□□□ -0.77
CCDC88C-206ENST00000553437 HS1BP3Q53T59 392 aa10.26□□□□□ -0.77
CCDC88C-206ENST00000553437 C6orf132Q5T0Z8 1188 aa10.26□□□□□ -0.77
CCDC88C-206ENST00000553437 CDCP2Q5VXM1 449 aa10.26□□□□□ -0.77
CCDC88C-206ENST00000553437 GUSBP11Q6P575 273 aa10.26□□□□□ -0.77
CCDC88C-206ENST00000553437 LVRNQ6Q4G3 990 aa10.26□□□□□ -0.77
CCDC88C-206ENST00000553437 BBS12Q6ZW61 710 aa10.26□□□□□ -0.77
CCDC88C-206ENST00000553437 BZW1Q7L1Q6 419 aaKnown RBP10.26□□□□□ -0.77
CCDC88C-206ENST00000553437 RD3Q7Z3Z2 195 aa10.26□□□□□ -0.77
CCDC88C-206ENST00000553437 NT5DC3Q86UY8 548 aa10.26□□□□□ -0.77
CCDC88C-206ENST00000553437 SLC35F3Q8IY50 421 aa10.26□□□□□ -0.77
CCDC88C-206ENST00000553437 FSTL5Q8N475 847 aaPredicted RBP10.26□□□□□ -0.77
CCDC88C-206ENST00000553437 SPC24Q8NBT2 197 aa10.26□□□□□ -0.77
CCDC88C-206ENST00000553437 LPCAT1Q8NF37 534 aa10.26□□□□□ -0.77
CCDC88C-206ENST00000553437 OR56A4Q8NGH8 313 aa10.26□□□□□ -0.77
CCDC88C-206ENST00000553437 ATL2Q8NHH9 583 aa10.26□□□□□ -0.77
CCDC88C-206ENST00000553437 PTCD2Q8WV60 388 aaKnown RBP10.26□□□□□ -0.77
CCDC88C-206ENST00000553437 TEKT5Q96M29 485 aa10.26□□□□□ -0.77
CCDC88C-206ENST00000553437 AGAP3Q96P47 875 aa10.26□□□□□ -0.77
CCDC88C-206ENST00000553437 RBM15Q96T37 977 aaKnown RBP eCLIP10.26□□□□□ -0.77
CCDC88C-206ENST00000553437 AGAP2Q99490 1192 aa10.26□□□□□ -0.77
CCDC88C-206ENST00000553437 HERPUD2Q9BSE4 406 aa10.26□□□□□ -0.77
CCDC88C-206ENST00000553437 FRMD8Q9BZ67 464 aaPredicted RBP10.26□□□□□ -0.77
CCDC88C-206ENST00000553437 ABCG8Q9H221 673 aa10.26□□□□□ -0.77
CCDC88C-206ENST00000553437 GLOD4Q9HC38 313 aa10.26□□□□□ -0.77
CCDC88C-206ENST00000553437 MRPL40Q9NQ50 206 aaKnown RBP10.26□□□□□ -0.77
CCDC88C-206ENST00000553437 SEPT10Q9P0V9 454 aa10.26□□□□□ -0.77
CCDC88C-206ENST00000553437 LAMA5O15230 3695 aa10.26□□□□□ -0.77
CCDC88C-206ENST00000553437 GRID2IPA4D2P6 1211 aa10.25□□□□□ -0.77
CCDC88C-206ENST00000553437 EME2A4GXA9 379 aaPredicted RBP10.25□□□□□ -0.77
CCDC88C-206ENST00000553437 ANKRD66B4E2M5 251 aa10.25□□□□□ -0.77
CCDC88C-206ENST00000553437 PDE2AO00408 941 aaPredicted RBP10.25□□□□□ -0.77
CCDC88C-206ENST00000553437 OPA1O60313 960 aa10.25□□□□□ -0.77
CCDC88C-206ENST00000553437 IPO7O95373 1038 aaKnown RBP10.25□□□□□ -0.77
CCDC88C-206ENST00000553437 CLDN7O95471 211 aa10.25□□□□□ -0.77
CCDC88C-206ENST00000553437 CEACAM5P06731 702 aa10.25□□□□□ -0.77
CCDC88C-206ENST00000553437 MYCLP1P12525 358 aaPredicted RBP10.25□□□□□ -0.77
CCDC88C-206ENST00000553437 CTSEP14091 401 aa10.25□□□□□ -0.77
CCDC88C-206ENST00000553437 JUPP14923 745 aa10.25□□□□□ -0.77
CCDC88C-206ENST00000553437 CA4P22748 312 aa10.25□□□□□ -0.77
CCDC88C-206ENST00000553437 KELP23276 732 aa10.25□□□□□ -0.77
CCDC88C-206ENST00000553437 CTNNA2P26232 953 aa10.25□□□□□ -0.77
CCDC88C-206ENST00000553437 DUSP3P51452 185 aaPredicted RBP10.25□□□□□ -0.77
CCDC88C-206ENST00000553437 COPS2P61201 443 aa10.25□□□□□ -0.77
CCDC88C-206ENST00000553437 CDK3Q00526 305 aa10.25□□□□□ -0.77
CCDC88C-206ENST00000553437 NR0B2Q15466 257 aa10.25□□□□□ -0.77
CCDC88C-206ENST00000553437 TCEA2Q15560 299 aa10.25□□□□□ -0.77
CCDC88C-206ENST00000553437 SLC14A2Q15849 920 aa10.25□□□□□ -0.77
CCDC88C-206ENST00000553437 ZNF765Q7L2R6 523 aa10.25□□□□□ -0.77
CCDC88C-206ENST00000553437 HEATR4Q86WZ0 1026 aa10.25□□□□□ -0.77
CCDC88C-206ENST00000553437 RAVER1Q8IY67 606 aaKnown RBP10.25□□□□□ -0.77
CCDC88C-206ENST00000553437 NRSN1Q8IZ57 195 aa10.25□□□□□ -0.77
CCDC88C-206ENST00000553437 SDR16C5Q8N3Y7 309 aa10.25□□□□□ -0.77
CCDC88C-206ENST00000553437 DCBLD1Q8N8Z6 715 aa10.25□□□□□ -0.77
CCDC88C-206ENST00000553437 SPATA22Q8NHS9 363 aa10.25□□□□□ -0.77
CCDC88C-206ENST00000553437 IFI44Q8TCB0 444 aa10.25□□□□□ -0.77
CCDC88C-206ENST00000553437 KIAA1524Q8TCG1 905 aa10.25□□□□□ -0.77
CCDC88C-206ENST00000553437 TFB1MQ8WVM0 346 aaKnown RBP10.25□□□□□ -0.77
CCDC88C-206ENST00000553437 ZCCHC14Q8WYQ9 949 aaKnown RBP10.25□□□□□ -0.77
CCDC88C-206ENST00000553437 ALG3Q92685 438 aa10.25□□□□□ -0.77
CCDC88C-206ENST00000553437 P3H4Q92791 437 aa10.25□□□□□ -0.77
CCDC88C-206ENST00000553437 SCAMP4Q969E2 229 aa10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms