RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 PON1P27169 355 aa12.89□□□□□ -0.35
VPS29-211ENST00000553128 ADCY8P40145 1251 aa12.89□□□□□ -0.35
VPS29-211ENST00000553128 ACTR1BP42025 376 aa12.89□□□□□ -0.35
VPS29-211ENST00000553128 PPM1FP49593 454 aaPredicted RBP12.89□□□□□ -0.35
VPS29-211ENST00000553128 PMS2P54278 862 aa12.89□□□□□ -0.35
VPS29-211ENST00000553128 ACTR1AP61163 376 aa12.89□□□□□ -0.35
VPS29-211ENST00000553128 GPLD1P80108 840 aa12.89□□□□□ -0.35
VPS29-211ENST00000553128 ACOX1Q15067 660 aa12.89□□□□□ -0.35
VPS29-211ENST00000553128 CFAP58Q5T655 872 aa12.89□□□□□ -0.35
VPS29-211ENST00000553128 DPPA4Q7L190 304 aa12.89□□□□□ -0.35
VPS29-211ENST00000553128 RTL3Q8N8U3 475 aaKnown RBP12.89□□□□□ -0.35
VPS29-211ENST00000553128 GPT2Q8TD30 523 aa12.89□□□□□ -0.35
VPS29-211ENST00000553128 SLC37A2Q8TED4 501 aa12.89□□□□□ -0.35
VPS29-211ENST00000553128 CPA5Q8WXQ8 436 aa12.89□□□□□ -0.35
VPS29-211ENST00000553128 CCDC34Q96HJ3 373 aa12.89□□□□□ -0.35
VPS29-211ENST00000553128 AHCYL2Q96HN2 611 aaKnown RBP12.89□□□□□ -0.35
VPS29-211ENST00000553128 COQ10AQ96MF6 247 aa12.89□□□□□ -0.35
VPS29-211ENST00000553128 DPYSL5Q9BPU6 564 aa12.89□□□□□ -0.35
VPS29-211ENST00000553128 TEX101Q9BY14 249 aa12.89□□□□□ -0.35
VPS29-211ENST00000553128 RETREG1Q9H6L5 497 aa12.89□□□□□ -0.35
VPS29-211ENST00000553128 PDFQ9HBH1 243 aa12.89□□□□□ -0.35
VPS29-211ENST00000553128 KLHL3Q9UH77 587 aa12.89□□□□□ -0.35
VPS29-211ENST00000553128 DNAJC12Q9UKB3 198 aa12.89□□□□□ -0.35
VPS29-211ENST00000553128 POLHQ9Y253 713 aa12.89□□□□□ -0.35
VPS29-211ENST00000553128 OAS3Q9Y6K5 1087 aaKnown RBP12.89□□□□□ -0.35
VPS29-211ENST00000553128 ESPL1Q14674 2120 aa12.88□□□□□ -0.35
VPS29-211ENST00000553128 CDC14CA4D256 554 aa12.88□□□□□ -0.35
VPS29-211ENST00000553128 WIPF3A6NGB9 483 aa12.88□□□□□ -0.35
VPS29-211ENST00000553128 TCP11X1B4DZS4 312 aa12.88□□□□□ -0.35
VPS29-211ENST00000553128 SORBS2O94875 1100 aaKnown RBP12.88□□□□□ -0.35
VPS29-211ENST00000553128 GNA14O95837 355 aa12.88□□□□□ -0.35
VPS29-211ENST00000553128 CDK3Q00526 305 aa12.88□□□□□ -0.35
VPS29-211ENST00000553128 RAPGEF1Q13905 1077 aa12.88□□□□□ -0.35
VPS29-211ENST00000553128 C1QL3Q5VWW1 255 aa12.88□□□□□ -0.35
VPS29-211ENST00000553128 DOK6Q6PKX4 331 aa12.88□□□□□ -0.35
VPS29-211ENST00000553128 GBP6Q6ZN66 633 aa12.88□□□□□ -0.35
VPS29-211ENST00000553128 FAM71AQ8IYT1 594 aa12.88□□□□□ -0.35
VPS29-211ENST00000553128 ESX1Q8N693 406 aa12.88□□□□□ -0.35
VPS29-211ENST00000553128 TSEN2Q8NCE0 465 aaKnown RBP12.88□□□□□ -0.35
VPS29-211ENST00000553128 JOSD2Q8TAC2 188 aa12.88□□□□□ -0.35
VPS29-211ENST00000553128 FNIP1Q8TF40 1166 aa12.88□□□□□ -0.35
VPS29-211ENST00000553128 RXFP2Q8WXD0 754 aa12.88□□□□□ -0.35
VPS29-211ENST00000553128 ECHDC3Q96DC8 303 aa12.88□□□□□ -0.35
VPS29-211ENST00000553128 FAM81BQ96LP2 452 aa12.88□□□□□ -0.35
VPS29-211ENST00000553128 PHF12Q96QT6 1004 aa12.88□□□□□ -0.35
VPS29-211ENST00000553128 ZPBPQ9BS86 351 aa12.88□□□□□ -0.35
VPS29-211ENST00000553128 PDCL3Q9H2J4 239 aa12.88□□□□□ -0.35
VPS29-211ENST00000553128 TRIT1Q9H3H1 467 aaKnown RBP12.88□□□□□ -0.35
VPS29-211ENST00000553128 TMEM51Q9NW97 253 aa12.88□□□□□ -0.35
VPS29-211ENST00000553128 SIDT1Q9NXL6 827 aaKnown RBP12.88□□□□□ -0.35
VPS29-211ENST00000553128 RCOR3Q9P2K3 495 aaPredicted RBP12.88□□□□□ -0.35
VPS29-211ENST00000553128 UBA2Q9UBT2 640 aaPredicted RBP12.88□□□□□ -0.35
VPS29-211ENST00000553128 ERRFI1Q9UJM3 462 aaPredicted RBP12.88□□□□□ -0.35
VPS29-211ENST00000553128 PCDHB3Q9Y5E6 796 aa12.88□□□□□ -0.35
VPS29-211ENST00000553128 ADGRG4Q8IZF6 3080 aa12.87□□□□□ -0.35
VPS29-211ENST00000553128 HIVEP3Q5T1R4 2406 aa12.87□□□□□ -0.35
VPS29-211ENST00000553128 PDE2AO00408 941 aaPredicted RBP12.87□□□□□ -0.35
VPS29-211ENST00000553128 POLR1CO15160 346 aaPredicted RBP12.87□□□□□ -0.35
VPS29-211ENST00000553128 KATNA1O75449 491 aa12.87□□□□□ -0.35
VPS29-211ENST00000553128 MAP3K6O95382 1288 aa12.87□□□□□ -0.35
VPS29-211ENST00000553128 DDAH2O95865 285 aa12.87□□□□□ -0.35
VPS29-211ENST00000553128 LDLRP01130 860 aa12.87□□□□□ -0.35
VPS29-211ENST00000553128 CYP11B1P15538 503 aa12.87□□□□□ -0.35
VPS29-211ENST00000553128 ELAVL4P26378 380 aaKnown RBP12.87□□□□□ -0.35
VPS29-211ENST00000553128 EPHB2P29323 1055 aa12.87□□□□□ -0.35
VPS29-211ENST00000553128 FASLGP48023 281 aa12.87□□□□□ -0.35
VPS29-211ENST00000553128 HDAC4P56524 1084 aa12.87□□□□□ -0.35
VPS29-211ENST00000553128 RIPPLY3P57055 190 aa12.87□□□□□ -0.35
VPS29-211ENST00000553128 GRM3Q14832 879 aa12.87□□□□□ -0.35
VPS29-211ENST00000553128 PTPRRQ15256 657 aa12.87□□□□□ -0.35
VPS29-211ENST00000553128 EXOC3L4Q17RC7 722 aa12.87□□□□□ -0.35
VPS29-211ENST00000553128 CPZQ66K79 652 aa12.87□□□□□ -0.35
VPS29-211ENST00000553128 DENND2CQ68D51 928 aa12.87□□□□□ -0.35
VPS29-211ENST00000553128 WDR74Q6RFH5 385 aaPredicted RBP12.87□□□□□ -0.35
VPS29-211ENST00000553128 SRLQ86TD4 932 aa12.87□□□□□ -0.35
VPS29-211ENST00000553128 GALNT6Q8NCL4 622 aa12.87□□□□□ -0.35
VPS29-211ENST00000553128 OR10G6Q8NH81 332 aa12.87□□□□□ -0.35
VPS29-211ENST00000553128 PRR7Q8TB68 274 aa12.87□□□□□ -0.35
VPS29-211ENST00000553128 PDCD6IPQ8WUM4 868 aaKnown RBP12.87□□□□□ -0.35
VPS29-211ENST00000553128 NCSTNQ92542 709 aa12.87□□□□□ -0.35
VPS29-211ENST00000553128 NUS1Q96E22 293 aa12.87□□□□□ -0.35
VPS29-211ENST00000553128 TUBGCP5Q96RT8 1024 aa12.87□□□□□ -0.35
VPS29-211ENST00000553128 SLC38A3Q99624 504 aa12.87□□□□□ -0.35
VPS29-211ENST00000553128 ULBP3Q9BZM4 244 aa12.87□□□□□ -0.35
VPS29-211ENST00000553128 PHPT1Q9NRX4 125 aaPredicted RBP12.87□□□□□ -0.35
VPS29-211ENST00000553128 LUZP4Q9P127 313 aa12.87□□□□□ -0.35
VPS29-211ENST00000553128 B4GALT6Q9UBX8 382 aa12.87□□□□□ -0.35
VPS29-211ENST00000553128 SLC17A4Q9Y2C5 497 aa12.87□□□□□ -0.35
VPS29-211ENST00000553128 TMEM98Q9Y2Y6 226 aa12.87□□□□□ -0.35
VPS29-211ENST00000553128 PCYT1BQ9Y5K3 369 aaPredicted RBP12.87□□□□□ -0.35
VPS29-211ENST00000553128 CELSR1Q9NYQ6 3014 aa12.86□□□□□ -0.35
VPS29-211ENST00000553128 C2CD3Q4AC94 2353 aa12.86□□□□□ -0.35
VPS29-211ENST00000553128 BICDL2A1A5D9 508 aa12.86□□□□□ -0.35
VPS29-211ENST00000553128 TTC24A2A3L6 582 aaPredicted RBP12.86□□□□□ -0.35
VPS29-211ENST00000553128 C2CD4BA6NLJ0 364 aa12.86□□□□□ -0.35
VPS29-211ENST00000553128 TRAFD1O14545 582 aaPredicted RBP12.86□□□□□ -0.35
VPS29-211ENST00000553128 SERPINA4P29622 427 aa12.86□□□□□ -0.35
VPS29-211ENST00000553128 MAN1A1P33908 653 aa12.86□□□□□ -0.35
VPS29-211ENST00000553128 ETV3P41162 512 aa12.86□□□□□ -0.35
VPS29-211ENST00000553128 MAPK9P45984 424 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms