RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 PFDN4Q9NQP4 134 aa9.87□□□□□ -0.83
SS18-205ENST00000542420 G3BP2Q9UN86 482 aaKnown RBP9.87□□□□□ -0.83
SS18-205ENST00000542420 ZNF510Q9Y2H8 683 aa9.87□□□□□ -0.83
SS18-205ENST00000542420 CCDC78A2IDD5 438 aa9.86□□□□□ -0.83
SS18-205ENST00000542420 CCDC162PA2VCL2 907 aa9.86□□□□□ -0.83
SS18-205ENST00000542420 GFRA2O00451 464 aa9.86□□□□□ -0.83
SS18-205ENST00000542420 COCHO43405 550 aa9.86□□□□□ -0.83
SS18-205ENST00000542420 KLK8O60259 260 aa9.86□□□□□ -0.83
SS18-205ENST00000542420 KERAO60938 352 aa9.86□□□□□ -0.83
SS18-205ENST00000542420 F11P03951 625 aa9.86□□□□□ -0.83
SS18-205ENST00000542420 LPOP22079 712 aaPredicted RBP9.86□□□□□ -0.83
SS18-205ENST00000542420 RANBP1P43487 201 aa9.86□□□□□ -0.83
SS18-205ENST00000542420 MAPK8P45983 427 aa9.86□□□□□ -0.83
SS18-205ENST00000542420 CSNK1DP48730 415 aa9.86□□□□□ -0.83
SS18-205ENST00000542420 TTPAP49638 278 aa9.86□□□□□ -0.83
SS18-205ENST00000542420 KCNQ1P51787 676 aa9.86□□□□□ -0.83
SS18-205ENST00000542420 RAB33AQ14088 237 aa9.86□□□□□ -0.83
SS18-205ENST00000542420 CCNIQ14094 377 aa9.86□□□□□ -0.83
SS18-205ENST00000542420 SMAD1Q15797 465 aaKnown RBP9.86□□□□□ -0.83
SS18-205ENST00000542420 PIGGQ5H8A4 983 aa9.86□□□□□ -0.83
SS18-205ENST00000542420 COQ5Q5HYK3 327 aa9.86□□□□□ -0.83
SS18-205ENST00000542420 IL31Q6EBC2 164 aa9.86□□□□□ -0.83
SS18-205ENST00000542420 CNKSR3Q6P9H4 555 aa9.86□□□□□ -0.83
SS18-205ENST00000542420 SNX32Q86XE0 403 aa9.86□□□□□ -0.83
SS18-205ENST00000542420 DSELQ8IZU8 1212 aa9.86□□□□□ -0.83
SS18-205ENST00000542420 CLYBLQ8N0X4 340 aa9.86□□□□□ -0.83
SS18-205ENST00000542420 POU5F2Q8N7G0 328 aa9.86□□□□□ -0.83
SS18-205ENST00000542420 CCNYL1Q8N7R7 359 aa9.86□□□□□ -0.83
SS18-205ENST00000542420 PIP4K2CQ8TBX8 421 aa9.86□□□□□ -0.83
SS18-205ENST00000542420 DNAJC1Q96KC8 554 aaKnown RBP9.86□□□□□ -0.83
SS18-205ENST00000542420 ZNF512Q96ME7 567 aaPredicted RBP9.86□□□□□ -0.83
SS18-205ENST00000542420 NUSAP1Q9BXS6 441 aaKnown RBP9.86□□□□□ -0.83
SS18-205ENST00000542420 NACA2Q9H009 215 aa9.86□□□□□ -0.83
SS18-205ENST00000542420 VCXQ9H320 206 aa9.86□□□□□ -0.83
SS18-205ENST00000542420 SCUBE2Q9NQ36 999 aa9.86□□□□□ -0.83
SS18-205ENST00000542420 PAK6Q9NQU5 681 aaPredicted RBP9.86□□□□□ -0.83
SS18-205ENST00000542420 TAS2R13Q9NYV9 303 aa9.86□□□□□ -0.83
SS18-205ENST00000542420 OGDHLQ9ULD0 1010 aa9.86□□□□□ -0.83
SS18-205ENST00000542420 COPG1Q9Y678 874 aaKnown RBP9.86□□□□□ -0.83
SS18-205ENST00000542420 MEI4A8MW99 385 aa9.85□□□□□ -0.83
SS18-205ENST00000542420 AURKAO14965 403 aa9.85□□□□□ -0.83
SS18-205ENST00000542420 MUSKO15146 869 aa9.85□□□□□ -0.83
SS18-205ENST00000542420 EFCAB14O75071 495 aa9.85□□□□□ -0.83
SS18-205ENST00000542420 OLFM2O95897 454 aa9.85□□□□□ -0.83
SS18-205ENST00000542420 HMBSP08397 361 aa9.85□□□□□ -0.83
SS18-205ENST00000542420 PIM1P11309 404 aaPredicted RBP9.85□□□□□ -0.83
SS18-205ENST00000542420 EPHA3P29320 983 aa9.85□□□□□ -0.83
SS18-205ENST00000542420 ALDH1A3P47895 512 aa9.85□□□□□ -0.83
SS18-205ENST00000542420 CDKN2DP55273 166 aa9.85□□□□□ -0.83
SS18-205ENST00000542420 ZNF460Q14592 562 aa9.85□□□□□ -0.83
SS18-205ENST00000542420 PABPC1LQ4VXU2 614 aaKnown RBP9.85□□□□□ -0.83
SS18-205ENST00000542420 ZNF789Q5FWF6 425 aa9.85□□□□□ -0.83
SS18-205ENST00000542420 UGT3A1Q6NUS8 523 aa9.85□□□□□ -0.83
SS18-205ENST00000542420 HJURPQ8NCD3 748 aaPredicted RBP9.85□□□□□ -0.83
SS18-205ENST00000542420 STAG3L4Q8TBR4 150 aa9.85□□□□□ -0.83
SS18-205ENST00000542420 GIPC2Q8TF65 315 aa9.85□□□□□ -0.83
SS18-205ENST00000542420 BCL7CQ8WUZ0 217 aaPredicted RBP9.85□□□□□ -0.83
SS18-205ENST00000542420 LPGAT1Q92604 370 aa9.85□□□□□ -0.83
SS18-205ENST00000542420 PRICKLE1Q96MT3 831 aaPredicted RBP9.85□□□□□ -0.83
SS18-205ENST00000542420 BTBD9Q96Q07 612 aa9.85□□□□□ -0.83
SS18-205ENST00000542420 SLC25A23Q9BV35 468 aa9.85□□□□□ -0.83
SS18-205ENST00000542420 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP9.85□□□□□ -0.83
SS18-205ENST00000542420 GTSE1Q9NYZ3 720 aa9.85□□□□□ -0.83
SS18-205ENST00000542420 MARCH4Q9P2E8 410 aaPredicted RBP9.85□□□□□ -0.83
SS18-205ENST00000542420 AGO1Q9UL18 857 aaKnown RBP9.85□□□□□ -0.83
SS18-205ENST00000542420 OAS3Q9Y6K5 1087 aaKnown RBP9.85□□□□□ -0.83
SS18-205ENST00000542420 TYW5A2RUC4 315 aaKnown RBP9.85□□□□□ -0.83
SS18-205ENST00000542420 BUD23O43709 281 aaKnown RBP9.85□□□□□ -0.83
SS18-205ENST00000542420 CAPNS1P04632 268 aa9.85□□□□□ -0.83
SS18-205ENST00000542420 CORO1AP31146 461 aaKnown RBP9.85□□□□□ -0.83
SS18-205ENST00000542420 OR1D2P34982 312 aa9.85□□□□□ -0.83
SS18-205ENST00000542420 AP1S1P61966 158 aa9.85□□□□□ -0.83
SS18-205ENST00000542420 RAD51Q06609 339 aa9.85□□□□□ -0.83
SS18-205ENST00000542420 TRAP1Q12931 704 aaKnown RBP9.85□□□□□ -0.83
SS18-205ENST00000542420 PDAP1Q13442 181 aaKnown RBP9.85□□□□□ -0.83
SS18-205ENST00000542420 CYTH1Q15438 398 aa9.85□□□□□ -0.83
SS18-205ENST00000542420 CRY1Q16526 586 aa9.85□□□□□ -0.83
SS18-205ENST00000542420 UNC50Q53HI1 259 aa9.85□□□□□ -0.83
SS18-205ENST00000542420 ZNF549Q6P9A3 640 aa9.85□□□□□ -0.83
SS18-205ENST00000542420 NCEH1Q6PIU2 408 aa9.85□□□□□ -0.83
SS18-205ENST00000542420 ITIH5Q86UX2 942 aa9.85□□□□□ -0.83
SS18-205ENST00000542420 TCEAL8Q8IYN2 117 aa9.85□□□□□ -0.83
SS18-205ENST00000542420 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP9.85□□□□□ -0.83
SS18-205ENST00000542420 BLOC1S5Q8TDH9 187 aa9.85□□□□□ -0.83
SS18-205ENST00000542420 GPR152Q8TDT2 470 aa9.85□□□□□ -0.83
SS18-205ENST00000542420 PPP2R3CQ969Q6 453 aa9.85□□□□□ -0.83
SS18-205ENST00000542420 DUS3LQ96G46 650 aaKnown RBP9.85□□□□□ -0.83
SS18-205ENST00000542420 PDLIM5Q96HC4 596 aaKnown RBP9.85□□□□□ -0.83
SS18-205ENST00000542420 CLPTM1LQ96KA5 538 aa9.85□□□□□ -0.83
SS18-205ENST00000542420 ATOH8Q96SQ7 321 aa9.85□□□□□ -0.83
SS18-205ENST00000542420 NDNQ99608 321 aa9.85□□□□□ -0.83
SS18-205ENST00000542420 MRPL1Q9BYD6 325 aaKnown RBP9.85□□□□□ -0.83
SS18-205ENST00000542420 CCDC68Q9H2F9 335 aa9.85□□□□□ -0.83
SS18-205ENST00000542420 WDR55Q9H6Y2 383 aaPredicted RBP9.85□□□□□ -0.83
SS18-205ENST00000542420 MAN1C1Q9NR34 630 aa9.85□□□□□ -0.83
SS18-205ENST00000542420 DNMT3BQ9UBC3 853 aaKnown RBP9.85□□□□□ -0.83
SS18-205ENST00000542420 SUCOQ9UBS9 1254 aaKnown RBP9.85□□□□□ -0.83
SS18-205ENST00000542420 PSMD13Q9UNM6 376 aa9.85□□□□□ -0.83
SS18-205ENST00000542420 TRAF6Q9Y4K3 522 aa9.85□□□□□ -0.83
SS18-205ENST00000542420 YIPF1Q9Y548 306 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms