RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 DEPDC7Q96QD5 511 aa20.59■□□□□ 0.89
VPS28-206ENST00000526734 BAG1Q99933 345 aaPredicted RBP20.59■□□□□ 0.89
VPS28-206ENST00000526734 ABCG4Q9H172 646 aa20.59■□□□□ 0.89
VPS28-206ENST00000526734 SLC25A51Q9H1U9 297 aa20.59■□□□□ 0.89
VPS28-206ENST00000526734 CAAP1Q9H8G2 361 aa20.59■□□□□ 0.89
VPS28-206ENST00000526734 PRSS38A1L453 326 aa20.58■□□□□ 0.89
VPS28-206ENST00000526734 RGSL1A5PLK6 1076 aa20.58■□□□□ 0.89
VPS28-206ENST00000526734 MMP2P08253 660 aa20.58■□□□□ 0.89
VPS28-206ENST00000526734 CTNNA1P35221 906 aaKnown RBP20.58■□□□□ 0.89
VPS28-206ENST00000526734 VAV2P52735 878 aa20.58■□□□□ 0.89
VPS28-206ENST00000526734 CDK3Q00526 305 aa20.58■□□□□ 0.89
VPS28-206ENST00000526734 IHHQ14623 411 aa20.58■□□□□ 0.89
VPS28-206ENST00000526734 CDKN3Q16667 212 aa20.58■□□□□ 0.89
VPS28-206ENST00000526734 TEX44Q53QW1 395 aa20.58■□□□□ 0.89
VPS28-206ENST00000526734 CDCP2Q5VXM1 449 aa20.58■□□□□ 0.89
VPS28-206ENST00000526734 ADAMTSL4Q6UY14 1074 aa20.58■□□□□ 0.89
VPS28-206ENST00000526734 EFL1Q7Z2Z2 1120 aaKnown RBP20.58■□□□□ 0.89
VPS28-206ENST00000526734 CCDC50Q8IVM0 306 aa20.58■□□□□ 0.89
VPS28-206ENST00000526734 SLC35F3Q8IY50 421 aa20.58■□□□□ 0.89
VPS28-206ENST00000526734 MAPK15Q8TD08 544 aa20.58■□□□□ 0.89
VPS28-206ENST00000526734 LRRN4Q8WUT4 740 aa20.58■□□□□ 0.89
VPS28-206ENST00000526734 GRAMD1AQ96CP6 724 aa20.58■□□□□ 0.89
VPS28-206ENST00000526734 AP2M1Q96CW1 435 aa20.58■□□□□ 0.89
VPS28-206ENST00000526734 SRPK1Q96SB4 655 aaKnown RBP20.58■□□□□ 0.89
VPS28-206ENST00000526734 VAT1Q99536 393 aa20.58■□□□□ 0.89
VPS28-206ENST00000526734 MLPHQ9BV36 600 aaPredicted RBP20.58■□□□□ 0.89
VPS28-206ENST00000526734 GOLPH3Q9H4A6 298 aa20.58■□□□□ 0.89
VPS28-206ENST00000526734 SEPT10Q9P0V9 454 aa20.58■□□□□ 0.89
VPS28-206ENST00000526734 PADI4Q9UM07 663 aa20.58■□□□□ 0.89
VPS28-206ENST00000526734 EFR3BQ9Y2G0 817 aa20.58■□□□□ 0.89
VPS28-206ENST00000526734 PLXNB3Q9ULL4 1909 aa20.58■□□□□ 0.88
VPS28-206ENST00000526734 TDRD6O60522 2096 aaKnown RBP20.57■□□□□ 0.88
VPS28-206ENST00000526734 CCDC66A2RUB6 948 aa20.57■□□□□ 0.88
VPS28-206ENST00000526734 CPED1A4D0V7 1026 aa20.57■□□□□ 0.88
VPS28-206ENST00000526734 SRRM3A6NNA2 597 aaPredicted RBP20.57■□□□□ 0.88
VPS28-206ENST00000526734 HACD1B0YJ81 288 aa20.57■□□□□ 0.88
VPS28-206ENST00000526734 ANKRD66B4E2M5 251 aa20.57■□□□□ 0.88
VPS28-206ENST00000526734 PJA2O43164 708 aa20.57■□□□□ 0.88
VPS28-206ENST00000526734 CETN2P41208 172 aa20.57■□□□□ 0.88
VPS28-206ENST00000526734 GPR1P46091 355 aa20.57■□□□□ 0.88
VPS28-206ENST00000526734 NAP1L1P55209 391 aaKnown RBP20.57■□□□□ 0.88
VPS28-206ENST00000526734 PTSQ03393 145 aa20.57■□□□□ 0.88
VPS28-206ENST00000526734 PEX6Q13608 980 aa20.57■□□□□ 0.88
VPS28-206ENST00000526734 RTP5Q14D33 572 aa20.57■□□□□ 0.88
VPS28-206ENST00000526734 QPCTQ16769 361 aa20.57■□□□□ 0.88
VPS28-206ENST00000526734 KAZNQ674X7 775 aa20.57■□□□□ 0.88
VPS28-206ENST00000526734 GUSBP11Q6P575 273 aa20.57■□□□□ 0.88
VPS28-206ENST00000526734 RAD9BQ6WBX8 426 aa20.57■□□□□ 0.88
VPS28-206ENST00000526734 BBS12Q6ZW61 710 aa20.57■□□□□ 0.88
VPS28-206ENST00000526734 CCHCR1Q8TD31 782 aa20.57■□□□□ 0.88
VPS28-206ENST00000526734 AGAP3Q96P47 875 aa20.57■□□□□ 0.88
VPS28-206ENST00000526734 LGR4Q9BXB1 951 aa20.57■□□□□ 0.88
VPS28-206ENST00000526734 FRMD8Q9BZ67 464 aaPredicted RBP20.57■□□□□ 0.88
VPS28-206ENST00000526734 ABCG8Q9H221 673 aa20.57■□□□□ 0.88
VPS28-206ENST00000526734 TRNAU1APQ9NX07 287 aaKnown RBP20.57■□□□□ 0.88
VPS28-206ENST00000526734 GPR34Q9UPC5 381 aa20.57■□□□□ 0.88
VPS28-206ENST00000526734 PCDHA3Q9Y5H8 950 aa20.57■□□□□ 0.88
VPS28-206ENST00000526734 AKAP13Q12802 2813 aa20.57■□□□□ 0.88
VPS28-206ENST00000526734 GOLGA6CA6NDK9 693 aa20.56■□□□□ 0.88
VPS28-206ENST00000526734 GOLGA6BA6NDN3 693 aa20.56■□□□□ 0.88
VPS28-206ENST00000526734 TCEA3O75764 348 aa20.56■□□□□ 0.88
VPS28-206ENST00000526734 ZNF189O75820 626 aaPredicted RBP20.56■□□□□ 0.88
VPS28-206ENST00000526734 GOLGA6DP0CG33 693 aa20.56■□□□□ 0.88
VPS28-206ENST00000526734 KIAA1328Q86T90 577 aa20.56■□□□□ 0.88
VPS28-206ENST00000526734 PELI3Q8N2H9 469 aa20.56■□□□□ 0.88
VPS28-206ENST00000526734 KIAA1524Q8TCG1 905 aa20.56■□□□□ 0.88
VPS28-206ENST00000526734 TADA1Q96BN2 335 aa20.56■□□□□ 0.88
VPS28-206ENST00000526734 TEKT5Q96M29 485 aa20.56■□□□□ 0.88
VPS28-206ENST00000526734 FERMT1Q9BQL6 677 aa20.56■□□□□ 0.88
VPS28-206ENST00000526734 CDH19Q9H159 772 aa20.56■□□□□ 0.88
VPS28-206ENST00000526734 GLOD4Q9HC38 313 aa20.56■□□□□ 0.88
VPS28-206ENST00000526734 CYP4F12Q9HCS2 524 aa20.56■□□□□ 0.88
VPS28-206ENST00000526734 RAD18Q9NS91 495 aa20.56■□□□□ 0.88
VPS28-206ENST00000526734 GOLGA6AQ9NYA3 693 aa20.56■□□□□ 0.88
VPS28-206ENST00000526734 PKD2L2Q9NZM6 624 aa20.56■□□□□ 0.88
VPS28-206ENST00000526734 TFR2Q9UP52 801 aa20.56■□□□□ 0.88
VPS28-206ENST00000526734 SLC17A4Q9Y2C5 497 aa20.56■□□□□ 0.88
VPS28-206ENST00000526734 REXO2Q9Y3B8 237 aaKnown RBP20.56■□□□□ 0.88
VPS28-206ENST00000526734 FRYQ5TBA9 3013 aa20.56■□□□□ 0.88
VPS28-206ENST00000526734 C1orf232A0A0U1RR37 186 aa20.55■□□□□ 0.88
VPS28-206ENST00000526734 RCCD1A6NED2 376 aa20.55■□□□□ 0.88
VPS28-206ENST00000526734 APOC4-APOC2K7ER74 178 aa20.55■□□□□ 0.88
VPS28-206ENST00000526734 APOC2P02655 101 aa20.55■□□□□ 0.88
VPS28-206ENST00000526734 IVLP07476 585 aa20.55■□□□□ 0.88
VPS28-206ENST00000526734 CELA2BP08218 269 aaPredicted RBP20.55■□□□□ 0.88
VPS28-206ENST00000526734 PECAM1P16284 738 aaPredicted RBP20.55■□□□□ 0.88
VPS28-206ENST00000526734 PTPN3P26045 913 aa20.55■□□□□ 0.88
VPS28-206ENST00000526734 CTNNA2P26232 953 aa20.55■□□□□ 0.88
VPS28-206ENST00000526734 PTPN7P35236 360 aa20.55■□□□□ 0.88
VPS28-206ENST00000526734 CLDN6P56747 220 aa20.55■□□□□ 0.88
VPS28-206ENST00000526734 CDK18Q07002 472 aa20.55■□□□□ 0.88
VPS28-206ENST00000526734 ILF3Q12906 894 aaKnown RBP eCLIP20.55■□□□□ 0.88
VPS28-206ENST00000526734 XRCC4Q13426 336 aa20.55■□□□□ 0.88
VPS28-206ENST00000526734 CCDC70Q6NSX1 233 aa20.55■□□□□ 0.88
VPS28-206ENST00000526734 TAF8Q7Z7C8 310 aa20.55■□□□□ 0.88
VPS28-206ENST00000526734 MARCH9Q86YJ5 346 aa20.55■□□□□ 0.88
VPS28-206ENST00000526734 MDM1Q8TC05 714 aa20.55■□□□□ 0.88
VPS28-206ENST00000526734 KRT35Q92764 455 aa20.55■□□□□ 0.88
VPS28-206ENST00000526734 TRIB3Q96RU7 358 aa20.55■□□□□ 0.88
VPS28-206ENST00000526734 GSDMCQ9BYG8 508 aa20.55■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms