RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 SH3BP5LQ7L8J4 393 aa12.05□□□□□ -0.48
LIMCH1-213ENST00000511496 TRPV3Q8NET8 790 aa12.05□□□□□ -0.48
LIMCH1-213ENST00000511496 CDC26Q8NHZ8 85 aa12.05□□□□□ -0.48
LIMCH1-213ENST00000511496 VANGL1Q8TAA9 524 aaPredicted RBP12.05□□□□□ -0.48
LIMCH1-213ENST00000511496 PCNPQ8WW12 178 aaKnown RBP12.05□□□□□ -0.48
LIMCH1-213ENST00000511496 RNF170Q96K19 258 aa12.05□□□□□ -0.48
LIMCH1-213ENST00000511496 PIF1Q9H611 641 aa12.05□□□□□ -0.48
LIMCH1-213ENST00000511496 LIN7BQ9HAP6 207 aa12.05□□□□□ -0.48
LIMCH1-213ENST00000511496 UBR1Q8IWV7 1749 aa12.05□□□□□ -0.48
LIMCH1-213ENST00000511496 CICQ96RK0 1608 aaPredicted RBP12.05□□□□□ -0.48
LIMCH1-213ENST00000511496 SRCAPQ6ZRS2 3230 aa12.05□□□□□ -0.48
LIMCH1-213ENST00000511496 C9JVG2 144 aa12.05□□□□□ -0.48
LIMCH1-213ENST00000511496 ZBTB5O15062 677 aa12.05□□□□□ -0.48
LIMCH1-213ENST00000511496 PGLSO95336 258 aa12.05□□□□□ -0.48
LIMCH1-213ENST00000511496 KLRK1P26718 216 aa12.05□□□□□ -0.48
LIMCH1-213ENST00000511496 GRK3P35626 688 aa12.05□□□□□ -0.48
LIMCH1-213ENST00000511496 HAAOP46952 286 aa12.05□□□□□ -0.48
LIMCH1-213ENST00000511496 SLC12A2P55011 1212 aa12.05□□□□□ -0.48
LIMCH1-213ENST00000511496 CAPRIN1Q14444 709 aaKnown RBP12.05□□□□□ -0.48
LIMCH1-213ENST00000511496 PDK2Q15119 407 aa12.05□□□□□ -0.48
LIMCH1-213ENST00000511496 BTBD16Q32M84 506 aa12.05□□□□□ -0.48
LIMCH1-213ENST00000511496 OR8H1Q8NGG4 311 aa12.05□□□□□ -0.48
LIMCH1-213ENST00000511496 TESCQ96BS2 214 aa12.05□□□□□ -0.48
LIMCH1-213ENST00000511496 BTBD2Q9BX70 525 aa12.05□□□□□ -0.48
LIMCH1-213ENST00000511496 HDHD5Q9BXW7 423 aa12.05□□□□□ -0.48
LIMCH1-213ENST00000511496 DCSTAMPQ9H295 470 aa12.05□□□□□ -0.48
LIMCH1-213ENST00000511496 FAM105AQ9NUU6 356 aa12.05□□□□□ -0.48
LIMCH1-213ENST00000511496 ERVK13-1Q9NX77 482 aa12.05□□□□□ -0.48
LIMCH1-213ENST00000511496 KCNE2Q9Y6J6 123 aa12.05□□□□□ -0.48
LIMCH1-213ENST00000511496 DOCK2Q92608 1830 aa12.04□□□□□ -0.48
LIMCH1-213ENST00000511496 DFFAO00273 331 aa12.04□□□□□ -0.48
LIMCH1-213ENST00000511496 NUPL2O15504 423 aaKnown RBP12.04□□□□□ -0.48
LIMCH1-213ENST00000511496 CYP7B1O75881 506 aa12.04□□□□□ -0.48
LIMCH1-213ENST00000511496 SOAT2O75908 522 aa12.04□□□□□ -0.48
LIMCH1-213ENST00000511496 KCNA6P17658 529 aa12.04□□□□□ -0.48
LIMCH1-213ENST00000511496 GGT5P36269 586 aa12.04□□□□□ -0.48
LIMCH1-213ENST00000511496 C16orf62Q7Z3J2 963 aa12.04□□□□□ -0.48
LIMCH1-213ENST00000511496 KRT28Q7Z3Y7 464 aa12.04□□□□□ -0.48
LIMCH1-213ENST00000511496 ABRAQ8N0Z2 381 aa12.04□□□□□ -0.48
LIMCH1-213ENST00000511496 SLC22A8Q8TCC7 542 aa12.04□□□□□ -0.48
LIMCH1-213ENST00000511496 CHAC2Q8WUX2 184 aa12.04□□□□□ -0.48
LIMCH1-213ENST00000511496 SLC45A3Q96JT2 553 aa12.04□□□□□ -0.48
LIMCH1-213ENST00000511496 SCYL1Q96KG9 808 aa12.04□□□□□ -0.48
LIMCH1-213ENST00000511496 SIGLEC10Q96LC7 697 aa12.04□□□□□ -0.48
LIMCH1-213ENST00000511496 GTSE1Q9NYZ3 720 aa12.04□□□□□ -0.48
LIMCH1-213ENST00000511496 OPTCQ9UBM4 332 aa12.04□□□□□ -0.48
LIMCH1-213ENST00000511496 PCDHA1Q9Y5I3 950 aa12.04□□□□□ -0.48
LIMCH1-213ENST00000511496 RREB1Q92766 1687 aa12.04□□□□□ -0.48
LIMCH1-213ENST00000511496 MEIOCA2RUB1 952 aa12.04□□□□□ -0.48
LIMCH1-213ENST00000511496 TNFRSF21O75509 655 aa12.04□□□□□ -0.48
LIMCH1-213ENST00000511496 LRIG2O94898 1065 aa12.04□□□□□ -0.48
LIMCH1-213ENST00000511496 CNTFP26441 200 aa12.04□□□□□ -0.48
LIMCH1-213ENST00000511496 SESN2P58004 480 aaPredicted RBP12.04□□□□□ -0.48
LIMCH1-213ENST00000511496 SNAP25P60880 206 aa12.04□□□□□ -0.48
LIMCH1-213ENST00000511496 POLR2GP62487 172 aaKnown RBP eCLIP12.04□□□□□ -0.48
LIMCH1-213ENST00000511496 GALEQ14376 348 aa12.04□□□□□ -0.48
LIMCH1-213ENST00000511496 LRRC38Q5VT99 294 aa12.04□□□□□ -0.48
LIMCH1-213ENST00000511496 ZNF600Q6ZNG1 722 aa12.04□□□□□ -0.48
LIMCH1-213ENST00000511496 ZBTB44Q8NCP5 570 aa12.04□□□□□ -0.48
LIMCH1-213ENST00000511496 OR4M1Q8NGD0 313 aa12.04□□□□□ -0.48
LIMCH1-213ENST00000511496 SLC7A14Q8TBB6 771 aa12.04□□□□□ -0.48
LIMCH1-213ENST00000511496 RNF145Q96MT1 663 aa12.04□□□□□ -0.48
LIMCH1-213ENST00000511496 ORAI2Q96SN7 254 aa12.04□□□□□ -0.48
LIMCH1-213ENST00000511496 ZNF385DQ9H6B1 395 aa12.04□□□□□ -0.48
LIMCH1-213ENST00000511496 TMEM8AQ9HCN3 771 aa12.04□□□□□ -0.48
LIMCH1-213ENST00000511496 NPAP1Q9NZP6 1156 aa12.04□□□□□ -0.48
LIMCH1-213ENST00000511496 TMEM181Q9P2C4 612 aa12.04□□□□□ -0.48
LIMCH1-213ENST00000511496 KLHL20Q9Y2M5 609 aa12.04□□□□□ -0.48
LIMCH1-213ENST00000511496 HSPB11Q9Y547 144 aa12.04□□□□□ -0.48
LIMCH1-213ENST00000511496 TAF1LQ8IZX4 1826 aa12.04□□□□□ -0.48
LIMCH1-213ENST00000511496 G3V2L1 256 aa12.04□□□□□ -0.48
LIMCH1-213ENST00000511496 SLC22A2O15244 555 aa12.04□□□□□ -0.48
LIMCH1-213ENST00000511496 MED26O95402 600 aa12.04□□□□□ -0.48
LIMCH1-213ENST00000511496 SNRPB2P08579 225 aaKnown RBP12.04□□□□□ -0.48
LIMCH1-213ENST00000511496 ERVK-10P10266 1014 aa12.04□□□□□ -0.48
LIMCH1-213ENST00000511496 IL1R1P14778 569 aa12.04□□□□□ -0.48
LIMCH1-213ENST00000511496 BTN1A1Q13410 526 aa12.04□□□□□ -0.48
LIMCH1-213ENST00000511496 GRM7Q14831 915 aa12.04□□□□□ -0.48
LIMCH1-213ENST00000511496 PLA2G4EQ3MJ16 856 aa12.04□□□□□ -0.48
LIMCH1-213ENST00000511496 ATF7IP2Q5U623 682 aa12.04□□□□□ -0.48
LIMCH1-213ENST00000511496 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP12.04□□□□□ -0.48
LIMCH1-213ENST00000511496 C15orf52Q6ZUT6 534 aaKnown RBP12.04□□□□□ -0.48
LIMCH1-213ENST00000511496 SIPA1Q96FS4 1042 aa12.04□□□□□ -0.48
LIMCH1-213ENST00000511496 ACCSQ96QU6 501 aa12.04□□□□□ -0.48
LIMCH1-213ENST00000511496 MXRA8Q9BRK3 442 aa12.04□□□□□ -0.48
LIMCH1-213ENST00000511496 MMP28Q9H239 520 aa12.04□□□□□ -0.48
LIMCH1-213ENST00000511496 ZFP14Q9HCL3 533 aa12.04□□□□□ -0.48
LIMCH1-213ENST00000511496 PAK5Q9P286 719 aa12.04□□□□□ -0.48
LIMCH1-213ENST00000511496 AASSQ9UDR5 926 aa12.04□□□□□ -0.48
LIMCH1-213ENST00000511496 GMEB2Q9UKD1 530 aa12.04□□□□□ -0.48
LIMCH1-213ENST00000511496 PCDHA11Q9Y5I1 949 aa12.04□□□□□ -0.48
LIMCH1-213ENST00000511496 MEGF6O75095 1541 aa12.03□□□□□ -0.48
LIMCH1-213ENST00000511496 CAMTA1Q9Y6Y1 1673 aa12.03□□□□□ -0.48
LIMCH1-213ENST00000511496 C3orf70A6NLC5 250 aaPredicted RBP12.03□□□□□ -0.48
LIMCH1-213ENST00000511496 TRPC5OSA6NMA1 111 aa12.03□□□□□ -0.48
LIMCH1-213ENST00000511496 EFCAB9A8MZ26 197 aa12.03□□□□□ -0.48
LIMCH1-213ENST00000511496 H3BMM5 538 aa12.03□□□□□ -0.48
LIMCH1-213ENST00000511496 APOC4-APOC2K7ER74 178 aa12.03□□□□□ -0.48
LIMCH1-213ENST00000511496 PI15O43692 258 aa12.03□□□□□ -0.48
LIMCH1-213ENST00000511496 OR2B3O76000 313 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms