RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 IRF4Q15306 451 aa29.56■■■□□ 2.32
LIMCH1-211ENST00000509638 GLE1Q53GS7 698 aaKnown RBP29.56■■■□□ 2.32
LIMCH1-211ENST00000509638 TP53I13Q8NBR0 393 aaPredicted RBP29.56■■■□□ 2.32
LIMCH1-211ENST00000509638 TMEM145Q8NBT3 493 aa29.56■■■□□ 2.32
LIMCH1-211ENST00000509638 DENND6BQ8NEG7 585 aa29.56■■■□□ 2.32
LIMCH1-211ENST00000509638 BPIFA1Q9NP55 256 aa29.56■■■□□ 2.32
LIMCH1-211ENST00000509638 GRHL1Q9NZI5 618 aa29.56■■■□□ 2.32
LIMCH1-211ENST00000509638 WHRNQ9P202 907 aa29.56■■■□□ 2.32
LIMCH1-211ENST00000509638 ANAPC5Q9UJX4 755 aa29.56■■■□□ 2.32
LIMCH1-211ENST00000509638 CA5BQ9Y2D0 317 aa29.56■■■□□ 2.32
LIMCH1-211ENST00000509638 ESYT3A0FGR9 886 aa29.56■■■□□ 2.32
LIMCH1-211ENST00000509638 PRAMEF26H0Y7S4 382 aa29.56■■■□□ 2.32
LIMCH1-211ENST00000509638 NDC80O14777 642 aa29.56■■■□□ 2.32
LIMCH1-211ENST00000509638 LDB2O43679 373 aa29.56■■■□□ 2.32
LIMCH1-211ENST00000509638 MLNP12872 115 aa29.56■■■□□ 2.32
LIMCH1-211ENST00000509638 MGAT1P26572 445 aa29.56■■■□□ 2.32
LIMCH1-211ENST00000509638 PI4KAP42356 2102 aa29.56■■■□□ 2.32
LIMCH1-211ENST00000509638 ZNF140P52738 457 aaPredicted RBP29.56■■■□□ 2.32
LIMCH1-211ENST00000509638 CRADDP78560 199 aa29.56■■■□□ 2.32
LIMCH1-211ENST00000509638 LRRC14Q15048 493 aa29.56■■■□□ 2.32
LIMCH1-211ENST00000509638 WSCD2Q2TBF2 565 aa29.56■■■□□ 2.32
LIMCH1-211ENST00000509638 SUMF1Q8NBK3 374 aa29.56■■■□□ 2.32
LIMCH1-211ENST00000509638 BBOF1Q8ND07 529 aa29.56■■■□□ 2.32
LIMCH1-211ENST00000509638 LENG8Q96PV6 779 aaPredicted RBP29.56■■■□□ 2.32
LIMCH1-211ENST00000509638 IL22Q9GZX6 179 aa29.56■■■□□ 2.32
LIMCH1-211ENST00000509638 BFARQ9NZS9 450 aa29.56■■■□□ 2.32
LIMCH1-211ENST00000509638 PKP3Q9Y446 797 aa29.56■■■□□ 2.32
LIMCH1-211ENST00000509638 KCTD3Q9Y597 815 aa29.56■■■□□ 2.32
LIMCH1-211ENST00000509638 PCCBP05166 539 aa29.55■■■□□ 2.32
LIMCH1-211ENST00000509638 LPOP22079 712 aaPredicted RBP29.55■■■□□ 2.32
LIMCH1-211ENST00000509638 IGFALSP35858 605 aa29.55■■■□□ 2.32
LIMCH1-211ENST00000509638 MAGEA3P43357 314 aa29.55■■■□□ 2.32
LIMCH1-211ENST00000509638 GUCY2DQ02846 1103 aa29.55■■■□□ 2.32
LIMCH1-211ENST00000509638 LAIR1Q6GTX8 287 aa29.55■■■□□ 2.32
LIMCH1-211ENST00000509638 RAVER1Q8IY67 606 aaKnown RBP29.55■■■□□ 2.32
LIMCH1-211ENST00000509638 C1orf216Q8TAB5 229 aa29.55■■■□□ 2.32
LIMCH1-211ENST00000509638 PIGKQ92643 395 aa29.55■■■□□ 2.32
LIMCH1-211ENST00000509638 CENPTQ96BT3 561 aa29.55■■■□□ 2.32
LIMCH1-211ENST00000509638 TM9SF3Q9HD45 589 aa29.55■■■□□ 2.32
LIMCH1-211ENST00000509638 SYBUQ9NX95 663 aa29.55■■■□□ 2.32
LIMCH1-211ENST00000509638 IL17CQ9P0M4 197 aa29.55■■■□□ 2.32
LIMCH1-211ENST00000509638 DMGDHQ9UI17 866 aaKnown RBP29.55■■■□□ 2.32
LIMCH1-211ENST00000509638 PILRBQ9UKJ0 227 aa29.55■■■□□ 2.32
LIMCH1-211ENST00000509638 SMAPO00193 183 aa29.54■■■□□ 2.32
LIMCH1-211ENST00000509638 EPN2O95208 641 aa29.54■■■□□ 2.32
LIMCH1-211ENST00000509638 BPIP17213 487 aa29.54■■■□□ 2.32
LIMCH1-211ENST00000509638 CLDN2P57739 230 aa29.54■■■□□ 2.32
LIMCH1-211ENST00000509638 PDE1BQ01064 536 aa29.54■■■□□ 2.32
LIMCH1-211ENST00000509638 PTPRCAPQ14761 206 aa29.54■■■□□ 2.32
LIMCH1-211ENST00000509638 ALS2CLQ60I27 953 aa29.54■■■□□ 2.32
LIMCH1-211ENST00000509638 KDM7AQ6ZMT4 941 aa29.54■■■□□ 2.32
LIMCH1-211ENST00000509638 GCNT7Q6ZNI0 430 aa29.54■■■□□ 2.32
LIMCH1-211ENST00000509638 PPHLN1Q8NEY8 458 aaKnown RBP29.54■■■□□ 2.32
LIMCH1-211ENST00000509638 SCAMP4Q969E2 229 aa29.54■■■□□ 2.32
LIMCH1-211ENST00000509638 LOXL4Q96JB6 756 aa29.54■■■□□ 2.32
LIMCH1-211ENST00000509638 MBNL1Q9NR56 388 aaKnown RBP29.54■■■□□ 2.32
LIMCH1-211ENST00000509638 AASDHPPTQ9NRN7 309 aa29.54■■■□□ 2.32
LIMCH1-211ENST00000509638 TMEM74BQ9NUR3 256 aa29.54■■■□□ 2.32
LIMCH1-211ENST00000509638 KCTD5Q9NXV2 234 aa29.54■■■□□ 2.32
LIMCH1-211ENST00000509638 RAPGEFL1Q9UHV5 662 aa29.54■■■□□ 2.32
LIMCH1-211ENST00000509638 FNDC3AQ9Y2H6 1198 aaKnown RBP29.54■■■□□ 2.32
LIMCH1-211ENST00000509638 CACNA1EQ15878 2313 aa29.54■■■□□ 2.32
LIMCH1-211ENST00000509638 CCDC78A2IDD5 438 aa29.53■■■□□ 2.32
LIMCH1-211ENST00000509638 HEATR9A2RTY3 570 aa29.53■■■□□ 2.32
LIMCH1-211ENST00000509638 H0Y8X5 98 aa29.53■■■□□ 2.32
LIMCH1-211ENST00000509638 STX7O15400 261 aaKnown RBP29.53■■■□□ 2.32
LIMCH1-211ENST00000509638 TRADDQ15628 312 aa29.53■■■□□ 2.32
LIMCH1-211ENST00000509638 SYT12Q8IV01 421 aa29.53■■■□□ 2.32
LIMCH1-211ENST00000509638 NRSN1Q8IZ57 195 aa29.53■■■□□ 2.32
LIMCH1-211ENST00000509638 GPR26Q8NDV2 337 aa29.53■■■□□ 2.32
LIMCH1-211ENST00000509638 OR4K2Q8NGD2 314 aa29.53■■■□□ 2.32
LIMCH1-211ENST00000509638 OR13C4Q8NGS5 318 aa29.53■■■□□ 2.32
LIMCH1-211ENST00000509638 AP2M1Q96CW1 435 aa29.53■■■□□ 2.32
LIMCH1-211ENST00000509638 RANBP9Q96S59 729 aa29.53■■■□□ 2.32
LIMCH1-211ENST00000509638 ABCG8Q9H221 673 aa29.53■■■□□ 2.32
LIMCH1-211ENST00000509638 SEMA4AQ9H3S1 761 aa29.53■■■□□ 2.32
LIMCH1-211ENST00000509638 TCAF1Q9Y4C2 921 aa29.53■■■□□ 2.32
LIMCH1-211ENST00000509638 OTOGLQ3ZCN5 2332 aa29.53■■■□□ 2.32
LIMCH1-211ENST00000509638 RGSL1A5PLK6 1076 aa29.52■■■□□ 2.32
LIMCH1-211ENST00000509638 NPY2RP49146 381 aa29.52■■■□□ 2.32
LIMCH1-211ENST00000509638 DCDC1P59894 354 aa29.52■■■□□ 2.32
LIMCH1-211ENST00000509638 RACK1P63244 317 aaKnown RBP29.52■■■□□ 2.32
LIMCH1-211ENST00000509638 PEAR1Q5VY43 1037 aaPredicted RBP29.52■■■□□ 2.32
LIMCH1-211ENST00000509638 ESRP1Q6NXG1 681 aaKnown RBP29.52■■■□□ 2.32
LIMCH1-211ENST00000509638 ZNF765Q7L2R6 523 aa29.52■■■□□ 2.32
LIMCH1-211ENST00000509638 PELI3Q8N2H9 469 aa29.52■■■□□ 2.32
LIMCH1-211ENST00000509638 SEC14L1Q92503 715 aa29.52■■■□□ 2.32
LIMCH1-211ENST00000509638 DNAJC1Q96KC8 554 aaKnown RBP29.52■■■□□ 2.32
LIMCH1-211ENST00000509638 NFKBIL1Q9UBC1 381 aaPredicted RBP29.52■■■□□ 2.32
LIMCH1-211ENST00000509638 RALGAPA1Q6GYQ0 2036 aa29.52■■■□□ 2.32
LIMCH1-211ENST00000509638 MROH6A6NGR9 719 aa29.52■■■□□ 2.32
LIMCH1-211ENST00000509638 K7ESM1 405 aa29.52■■■□□ 2.32
LIMCH1-211ENST00000509638 FPGTO14772 594 aa29.52■■■□□ 2.32
LIMCH1-211ENST00000509638 BCAT2O15382 392 aaPredicted RBP29.52■■■□□ 2.32
LIMCH1-211ENST00000509638 ADRA1DP25100 572 aa29.52■■■□□ 2.32
LIMCH1-211ENST00000509638 LAYNQ6UX15 382 aa29.52■■■□□ 2.32
LIMCH1-211ENST00000509638 MPP5Q8N3R9 675 aa29.52■■■□□ 2.32
LIMCH1-211ENST00000509638 PLA2G15Q8NCC3 412 aa29.52■■■□□ 2.32
LIMCH1-211ENST00000509638 RIOK2Q9BVS4 552 aaKnown RBP29.52■■■□□ 2.32
LIMCH1-211ENST00000509638 FRMD8Q9BZ67 464 aaPredicted RBP29.52■■■□□ 2.32
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms