RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 KCTD3Q9Y597 815 aa17.15■□□□□ 0.34
VIM-204ENST00000478746 ST14Q9Y5Y6 855 aa17.15■□□□□ 0.34
VIM-204ENST00000478746 AGFG2O95081 481 aa17.14■□□□□ 0.33
VIM-204ENST00000478746 CYP1A1P04798 512 aaPredicted RBP17.14■□□□□ 0.33
VIM-204ENST00000478746 NR1D1P20393 614 aa17.14■□□□□ 0.33
VIM-204ENST00000478746 RFC1P35251 1148 aaPredicted RBP17.14■□□□□ 0.33
VIM-204ENST00000478746 NOP2P46087 812 aaKnown RBP17.14■□□□□ 0.33
VIM-204ENST00000478746 POLD2P49005 469 aa17.14■□□□□ 0.33
VIM-204ENST00000478746 COPB1P53618 953 aaKnown RBP17.14■□□□□ 0.33
VIM-204ENST00000478746 TPD52L1Q16890 204 aaPredicted RBP17.14■□□□□ 0.33
VIM-204ENST00000478746 VWA3BQ502W6 1294 aa17.14■□□□□ 0.33
VIM-204ENST00000478746 ATP1A1-AS1Q5TC04 95 aa17.14■□□□□ 0.33
VIM-204ENST00000478746 ZNF677Q86XU0 584 aa17.14■□□□□ 0.33
VIM-204ENST00000478746 OR10G6Q8NH81 332 aa17.14■□□□□ 0.33
VIM-204ENST00000478746 PTCD2Q8WV60 388 aaKnown RBP17.14■□□□□ 0.33
VIM-204ENST00000478746 C11orf70Q9BRQ4 267 aa17.14■□□□□ 0.33
VIM-204ENST00000478746 NAA15Q9BXJ9 866 aaKnown RBP17.14■□□□□ 0.33
VIM-204ENST00000478746 LRRC19Q9H756 370 aa17.14■□□□□ 0.33
VIM-204ENST00000478746 PRDM8Q9NQV8 689 aa17.14■□□□□ 0.33
VIM-204ENST00000478746 FBXO8Q9NRD0 319 aa17.14■□□□□ 0.33
VIM-204ENST00000478746 DONSONQ9NYP3 566 aa17.14■□□□□ 0.33
VIM-204ENST00000478746 TRBV23OR9-2A0A075B6M9 112 aa17.13■□□□□ 0.33
VIM-204ENST00000478746 ENO4A6NNW6 628 aa17.13■□□□□ 0.33
VIM-204ENST00000478746 MKRN2OSH3BPM6 223 aa17.13■□□□□ 0.33
VIM-204ENST00000478746 FGF10O15520 208 aaPredicted RBP17.13■□□□□ 0.33
VIM-204ENST00000478746 VPS4BO75351 444 aa17.13■□□□□ 0.33
VIM-204ENST00000478746 STK17BO94768 372 aa17.13■□□□□ 0.33
VIM-204ENST00000478746 GPD1P21695 349 aa17.13■□□□□ 0.33
VIM-204ENST00000478746 ACTR1BP42025 376 aa17.13■□□□□ 0.33
VIM-204ENST00000478746 PAPOLAP51003 745 aaKnown RBP17.13■□□□□ 0.33
VIM-204ENST00000478746 NDST2P52849 883 aa17.13■□□□□ 0.33
VIM-204ENST00000478746 ACTR1AP61163 376 aa17.13■□□□□ 0.33
VIM-204ENST00000478746 CDK3Q00526 305 aa17.13■□□□□ 0.33
VIM-204ENST00000478746 NSUN2Q08J23 767 aaKnown RBP eCLIP17.13■□□□□ 0.33
VIM-204ENST00000478746 FHL5Q5TD97 284 aa17.13■□□□□ 0.33
VIM-204ENST00000478746 DENND2CQ68D51 928 aa17.13■□□□□ 0.33
VIM-204ENST00000478746 TCTN3Q6NUS6 607 aa17.13■□□□□ 0.33
VIM-204ENST00000478746 WDR59Q6PJI9 974 aa17.13■□□□□ 0.33
VIM-204ENST00000478746 ARHGAP22Q7Z5H3 698 aa17.13■□□□□ 0.33
VIM-204ENST00000478746 ZNF761Q86XN6 746 aaPredicted RBP17.13■□□□□ 0.33
VIM-204ENST00000478746 SLC20A1Q8WUM9 679 aa17.13■□□□□ 0.33
VIM-204ENST00000478746 CELF6Q96J87 481 aaKnown RBP17.13■□□□□ 0.33
VIM-204ENST00000478746 SLC38A3Q99624 504 aa17.13■□□□□ 0.33
VIM-204ENST00000478746 SELENOOQ9BVL4 669 aa17.13■□□□□ 0.33
VIM-204ENST00000478746 CINPQ9BW66 212 aaPredicted RBP17.13■□□□□ 0.33
VIM-204ENST00000478746 STK33Q9BYT3 514 aa17.13■□□□□ 0.33
VIM-204ENST00000478746 B4GALT6Q9UBX8 382 aa17.13■□□□□ 0.33
VIM-204ENST00000478746 FZD10Q9ULW2 581 aa17.13■□□□□ 0.33
VIM-204ENST00000478746 VPS4AQ9UN37 437 aa17.13■□□□□ 0.33
VIM-204ENST00000478746 PLEKHM1Q9Y4G2 1056 aa17.13■□□□□ 0.33
VIM-204ENST00000478746 TMEM184BQ9Y519 407 aaPredicted RBP17.13■□□□□ 0.33
VIM-204ENST00000478746 PCDHB3Q9Y5E6 796 aa17.13■□□□□ 0.33
VIM-204ENST00000478746 KCNMB2Q9Y691 235 aa17.13■□□□□ 0.33
VIM-204ENST00000478746 CACNA1DQ01668 2161 aa17.13■□□□□ 0.33
VIM-204ENST00000478746 GOLGA6CA6NDK9 693 aa17.12■□□□□ 0.33
VIM-204ENST00000478746 GOLGA6BA6NDN3 693 aa17.12■□□□□ 0.33
VIM-204ENST00000478746 ARHGAP42A6NI28 874 aa17.12■□□□□ 0.33
VIM-204ENST00000478746 K7EM74 188 aa17.12■□□□□ 0.33
VIM-204ENST00000478746 TRAFD1O14545 582 aaPredicted RBP17.12■□□□□ 0.33
VIM-204ENST00000478746 IVLP07476 585 aa17.12■□□□□ 0.33
VIM-204ENST00000478746 GOLGA6DP0CG33 693 aa17.12■□□□□ 0.33
VIM-204ENST00000478746 PRKCSHP14314 528 aaPredicted RBP17.12■□□□□ 0.33
VIM-204ENST00000478746 UCHL3P15374 230 aa17.12■□□□□ 0.33
VIM-204ENST00000478746 SCNN1BP51168 640 aa17.12■□□□□ 0.33
VIM-204ENST00000478746 CDR2Q01850 454 aa17.12■□□□□ 0.33
VIM-204ENST00000478746 WDR74Q6RFH5 385 aaPredicted RBP17.12■□□□□ 0.33
VIM-204ENST00000478746 ASB18Q6ZVZ8 466 aa17.12■□□□□ 0.33
VIM-204ENST00000478746 CCDC13Q8IYE1 715 aa17.12■□□□□ 0.33
VIM-204ENST00000478746 SLC39A8Q9C0K1 460 aa17.12■□□□□ 0.33
VIM-204ENST00000478746 APMAPQ9HDC9 416 aa17.12■□□□□ 0.33
VIM-204ENST00000478746 GOLGA6AQ9NYA3 693 aa17.12■□□□□ 0.33
VIM-204ENST00000478746 NOCTQ9UK39 431 aaKnown RBP17.12■□□□□ 0.33
VIM-204ENST00000478746 SLC17A4Q9Y2C5 497 aa17.12■□□□□ 0.33
VIM-204ENST00000478746 ITPR2Q14571 2701 aa17.11■□□□□ 0.33
VIM-204ENST00000478746 F8VZ95 297 aa17.11■□□□□ 0.33
VIM-204ENST00000478746 PES1O00541 588 aaKnown RBP17.11■□□□□ 0.33
VIM-204ENST00000478746 POLR1CO15160 346 aaPredicted RBP17.11■□□□□ 0.33
VIM-204ENST00000478746 CHRNB2P17787 502 aa17.11■□□□□ 0.33
VIM-204ENST00000478746 UQCRFS1P47985 274 aa17.11■□□□□ 0.33
VIM-204ENST00000478746 FASLGP48023 281 aa17.11■□□□□ 0.33
VIM-204ENST00000478746 AIF1P55008 147 aa17.11■□□□□ 0.33
VIM-204ENST00000478746 FMO1Q01740 532 aa17.11■□□□□ 0.33
VIM-204ENST00000478746 CNGA3Q16281 694 aa17.11■□□□□ 0.33
VIM-204ENST00000478746 MIIPQ5JXC2 388 aa17.11■□□□□ 0.33
VIM-204ENST00000478746 RAET1GQ6H3X3 334 aa17.11■□□□□ 0.33
VIM-204ENST00000478746 DOK6Q6PKX4 331 aa17.11■□□□□ 0.33
VIM-204ENST00000478746 FAM114A1Q8IWE2 563 aa17.11■□□□□ 0.33
VIM-204ENST00000478746 ESX1Q8N693 406 aa17.11■□□□□ 0.33
VIM-204ENST00000478746 NCSTNQ92542 709 aa17.11■□□□□ 0.33
VIM-204ENST00000478746 TUBGCP2Q9BSJ2 902 aa17.11■□□□□ 0.33
VIM-204ENST00000478746 ADAM22Q9P0K1 906 aa17.11■□□□□ 0.33
VIM-204ENST00000478746 MRPS18BQ9Y676 258 aaKnown RBP17.11■□□□□ 0.33
VIM-204ENST00000478746 RPS6KL1Q9Y6S9 549 aa17.11■□□□□ 0.33
VIM-204ENST00000478746 CCP110O43303 1012 aa17.1■□□□□ 0.33
VIM-204ENST00000478746 GFPT2O94808 682 aa17.1■□□□□ 0.33
VIM-204ENST00000478746 HEXIM1O94992 359 aaKnown RBP17.1■□□□□ 0.33
VIM-204ENST00000478746 GNLYP22749 145 aa17.1■□□□□ 0.33
VIM-204ENST00000478746 VIPR1P32241 457 aa17.1■□□□□ 0.33
VIM-204ENST00000478746 ETV3P41162 512 aa17.1■□□□□ 0.33
VIM-204ENST00000478746 STAT5AP42229 794 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms