RNA–Protein interactions for RNA: ENST00000460162.1

PTPN4-207, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-207ENST00000460162 SSUH2Q9Y2M2 353 aa22.76■■□□□ 1.23
PTPN4-207ENST00000460162 PLD2O14939 933 aa22.75■■□□□ 1.23
PTPN4-207ENST00000460162 NUDT21O43809 227 aaKnown RBP22.75■■□□□ 1.23
PTPN4-207ENST00000460162 FZD6O60353 706 aa22.75■■□□□ 1.23
PTPN4-207ENST00000460162 PROSCO94903 275 aa22.75■■□□□ 1.23
PTPN4-207ENST00000460162 TPM3P06753 285 aa22.75■■□□□ 1.23
PTPN4-207ENST00000460162 HNRNPH3P31942 346 aaKnown RBP22.75■■□□□ 1.23
PTPN4-207ENST00000460162 CASP14P31944 242 aa22.75■■□□□ 1.23
PTPN4-207ENST00000460162 DPTQ07507 201 aa22.75■■□□□ 1.23
PTPN4-207ENST00000460162 ILF3Q12906 894 aaKnown RBP eCLIP22.75■■□□□ 1.23
PTPN4-207ENST00000460162 PDK2Q15119 407 aa22.75■■□□□ 1.23
PTPN4-207ENST00000460162 RAET1GQ6H3X3 334 aa22.75■■□□□ 1.23
PTPN4-207ENST00000460162 SPRED1Q7Z699 444 aa22.75■■□□□ 1.23
PTPN4-207ENST00000460162 CCL4L1Q8NHW4 92 aa22.75■■□□□ 1.23
PTPN4-207ENST00000460162 GPBAR1Q8TDU6 330 aa22.75■■□□□ 1.23
PTPN4-207ENST00000460162 PIH1D2Q8WWB5 315 aa22.75■■□□□ 1.23
PTPN4-207ENST00000460162 GSDMCQ9BYG8 508 aa22.75■■□□□ 1.23
PTPN4-207ENST00000460162 TRNAU1APQ9NX07 287 aaKnown RBP22.75■■□□□ 1.23
PTPN4-207ENST00000460162 CTTNBP2NLQ9P2B4 639 aa22.75■■□□□ 1.23
PTPN4-207ENST00000460162 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP22.75■■□□□ 1.23
PTPN4-207ENST00000460162 CCNB1P14635 433 aa22.74■■□□□ 1.23
PTPN4-207ENST00000460162 GJC1P36383 396 aa22.74■■□□□ 1.23
PTPN4-207ENST00000460162 IFI16Q16666 785 aaKnown RBP22.74■■□□□ 1.23
PTPN4-207ENST00000460162 Q6ZVL8 140 aa22.74■■□□□ 1.23
PTPN4-207ENST00000460162 RAB11FIP2Q7L804 512 aa22.74■■□□□ 1.23
PTPN4-207ENST00000460162 TSPAN33Q86UF1 283 aa22.74■■□□□ 1.23
PTPN4-207ENST00000460162 CTNNBL1Q8WYA6 563 aaPredicted RBP22.74■■□□□ 1.23
PTPN4-207ENST00000460162 FOXP3Q9BZS1 431 aa22.74■■□□□ 1.23
PTPN4-207ENST00000460162 CPNE5Q9HCH3 593 aa22.74■■□□□ 1.23
PTPN4-207ENST00000460162 DNPEPQ9ULA0 475 aa22.74■■□□□ 1.23
PTPN4-207ENST00000460162 PCDHGA7Q9Y5G6 932 aa22.74■■□□□ 1.23
PTPN4-207ENST00000460162 RNF215Q9Y6U7 377 aa22.74■■□□□ 1.23
PTPN4-207ENST00000460162 UNC13CQ8NB66 2214 aa22.74■■□□□ 1.23
PTPN4-207ENST00000460162 GCN1Q92616 2671 aaKnown RBP22.74■■□□□ 1.23
PTPN4-207ENST00000460162 GOLGA6CA6NDK9 693 aa22.73■■□□□ 1.23
PTPN4-207ENST00000460162 GOLGA6BA6NDN3 693 aa22.73■■□□□ 1.23
PTPN4-207ENST00000460162 ERVH48-1M5A8F1 160 aa22.73■■□□□ 1.23
PTPN4-207ENST00000460162 CEACAM5P06731 702 aa22.73■■□□□ 1.23
PTPN4-207ENST00000460162 KRT7P08729 469 aa22.73■■□□□ 1.23
PTPN4-207ENST00000460162 GOLGA6DP0CG33 693 aa22.73■■□□□ 1.23
PTPN4-207ENST00000460162 ZNF30P17039 623 aa22.73■■□□□ 1.23
PTPN4-207ENST00000460162 CTPS1P17812 591 aa22.73■■□□□ 1.23
PTPN4-207ENST00000460162 CA4P22748 312 aa22.73■■□□□ 1.23
PTPN4-207ENST00000460162 CES1P23141 567 aa22.73■■□□□ 1.23
PTPN4-207ENST00000460162 RHDQ02161 417 aa22.73■■□□□ 1.23
PTPN4-207ENST00000460162 ITKQ08881 620 aa22.73■■□□□ 1.23
PTPN4-207ENST00000460162 ANKRD20A8PQ5CZ79 823 aa22.73■■□□□ 1.23
PTPN4-207ENST00000460162 LRRC66Q68CR7 880 aa22.73■■□□□ 1.23
PTPN4-207ENST00000460162 TECPR1Q7Z6L1 1165 aa22.73■■□□□ 1.23
PTPN4-207ENST00000460162 MAP7D3Q8IWC1 876 aa22.73■■□□□ 1.23
PTPN4-207ENST00000460162 FBXO39Q8N4B4 442 aa22.73■■□□□ 1.23
PTPN4-207ENST00000460162 KCTD6Q8NC69 237 aa22.73■■□□□ 1.23
PTPN4-207ENST00000460162 SNRNP27Q8WVK2 155 aaKnown RBP22.73■■□□□ 1.23
PTPN4-207ENST00000460162 FAF2Q96CS3 445 aa22.73■■□□□ 1.23
PTPN4-207ENST00000460162 TSGA13Q96PP4 275 aa22.73■■□□□ 1.23
PTPN4-207ENST00000460162 TDRD1Q9BXT4 1180 aaKnown RBP22.73■■□□□ 1.23
PTPN4-207ENST00000460162 GOLGA6AQ9NYA3 693 aa22.73■■□□□ 1.23
PTPN4-207ENST00000460162 LRIT1Q9P2V4 623 aa22.73■■□□□ 1.23
PTPN4-207ENST00000460162 SUFUQ9UMX1 484 aa22.73■■□□□ 1.23
PTPN4-207ENST00000460162 SLC17A4Q9Y2C5 497 aa22.73■■□□□ 1.23
PTPN4-207ENST00000460162 ATMQ13315 3056 aa22.72■■□□□ 1.23
PTPN4-207ENST00000460162 A0A0J9YYE9 177 aa22.72■■□□□ 1.23
PTPN4-207ENST00000460162 MATN3O15232 486 aa22.72■■□□□ 1.23
PTPN4-207ENST00000460162 TRBC1P01850 177 aa22.72■■□□□ 1.23
PTPN4-207ENST00000460162 IVLP07476 585 aa22.72■■□□□ 1.23
PTPN4-207ENST00000460162 PDHA1P08559 390 aa22.72■■□□□ 1.23
PTPN4-207ENST00000460162 H2AFZP0C0S5 128 aa22.72■■□□□ 1.23
PTPN4-207ENST00000460162 PTMSP20962 102 aa22.72■■□□□ 1.23
PTPN4-207ENST00000460162 CCNCP24863 283 aa22.72■■□□□ 1.23
PTPN4-207ENST00000460162 MAN1A1P33908 653 aa22.72■■□□□ 1.23
PTPN4-207ENST00000460162 UGT1A5P35504 534 aa22.72■■□□□ 1.23
PTPN4-207ENST00000460162 PEX6Q13608 980 aa22.72■■□□□ 1.23
PTPN4-207ENST00000460162 SLC18A3Q16572 532 aa22.72■■□□□ 1.23
PTPN4-207ENST00000460162 H2AFVQ71UI9 128 aa22.72■■□□□ 1.23
PTPN4-207ENST00000460162 ZNF765Q7L2R6 523 aa22.72■■□□□ 1.23
PTPN4-207ENST00000460162 C17orf82Q86X59 251 aaPredicted RBP22.72■■□□□ 1.23
PTPN4-207ENST00000460162 SFTPA2Q8IWL1 248 aa22.72■■□□□ 1.23
PTPN4-207ENST00000460162 TMEM159Q96B96 161 aa22.72■■□□□ 1.23
PTPN4-207ENST00000460162 XPO4Q9C0E2 1151 aaKnown RBP22.72■■□□□ 1.23
PTPN4-207ENST00000460162 CAPN8A6NHC0 703 aa22.71■■□□□ 1.23
PTPN4-207ENST00000460162 PYGLP06737 847 aa22.71■■□□□ 1.23
PTPN4-207ENST00000460162 MX2P20592 715 aa22.71■■□□□ 1.23
PTPN4-207ENST00000460162 GPR1P46091 355 aa22.71■■□□□ 1.23
PTPN4-207ENST00000460162 GNPDA1P46926 289 aa22.71■■□□□ 1.23
PTPN4-207ENST00000460162 EPHB1P54762 984 aa22.71■■□□□ 1.23
PTPN4-207ENST00000460162 DSC2Q02487 901 aa22.71■■□□□ 1.23
PTPN4-207ENST00000460162 VAC14Q08AM6 782 aa22.71■■□□□ 1.23
PTPN4-207ENST00000460162 TRIM14Q14142 442 aa22.71■■□□□ 1.23
PTPN4-207ENST00000460162 ATP13A4Q4VNC1 1196 aa22.71■■□□□ 1.23
PTPN4-207ENST00000460162 ARHGAP40Q5TG30 622 aa22.71■■□□□ 1.23
PTPN4-207ENST00000460162 ADAMTSL4Q6UY14 1074 aa22.71■■□□□ 1.23
PTPN4-207ENST00000460162 ZNF438Q7Z4V0 828 aa22.71■■□□□ 1.23
PTPN4-207ENST00000460162 NRROSQ86YC3 692 aa22.71■■□□□ 1.23
PTPN4-207ENST00000460162 CPNE8Q86YQ8 564 aa22.71■■□□□ 1.23
PTPN4-207ENST00000460162 Q8N9G6 341 aaPredicted RBP22.71■■□□□ 1.23
PTPN4-207ENST00000460162 ZDHHC1Q8WTX9 485 aa22.71■■□□□ 1.23
PTPN4-207ENST00000460162 AP2M1Q96CW1 435 aa22.71■■□□□ 1.23
PTPN4-207ENST00000460162 HDAC11Q96DB2 347 aa22.71■■□□□ 1.23
PTPN4-207ENST00000460162 CDH19Q9H159 772 aa22.71■■□□□ 1.23
PTPN4-207ENST00000460162 SUDS3Q9H7L9 328 aaPredicted RBP22.71■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms