RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 RFPL2O75678 378 aa8.37□□□□□ -1.07
CD44-208ENST00000428726 RHOCP08134 193 aa8.37□□□□□ -1.07
CD44-208ENST00000428726 MAGEA12P43365 314 aa8.37□□□□□ -1.07
CD44-208ENST00000428726 HARS2P49590 506 aaKnown RBP8.37□□□□□ -1.07
CD44-208ENST00000428726 SATB1Q01826 763 aa8.37□□□□□ -1.07
CD44-208ENST00000428726 NRG1Q02297 640 aaPredicted RBP8.37□□□□□ -1.07
CD44-208ENST00000428726 ART3Q13508 389 aa8.37□□□□□ -1.07
CD44-208ENST00000428726 GRB7Q14451 532 aa8.37□□□□□ -1.07
CD44-208ENST00000428726 OR4D1Q15615 310 aa8.37□□□□□ -1.07
CD44-208ENST00000428726 NFE2Q16621 373 aaPredicted RBP8.37□□□□□ -1.07
CD44-208ENST00000428726 ARTNQ5T4W7 220 aa8.37□□□□□ -1.07
CD44-208ENST00000428726 ZNF648Q5T619 568 aaPredicted RBP8.37□□□□□ -1.07
CD44-208ENST00000428726 DNAJC14Q6Y2X3 702 aaPredicted RBP8.37□□□□□ -1.07
CD44-208ENST00000428726 GLT6D1Q7Z4J2 308 aa8.37□□□□□ -1.07
CD44-208ENST00000428726 AMIGO2Q86SJ2 522 aa8.37□□□□□ -1.07
CD44-208ENST00000428726 LINC00523Q86TU6 105 aa8.37□□□□□ -1.07
CD44-208ENST00000428726 ZBTB46Q86UZ6 589 aa8.37□□□□□ -1.07
CD44-208ENST00000428726 ATP6V0D2Q8N8Y2 350 aa8.37□□□□□ -1.07
CD44-208ENST00000428726 OR10Q1Q8NGQ4 319 aa8.37□□□□□ -1.07
CD44-208ENST00000428726 FOXJ1Q92949 421 aa8.37□□□□□ -1.07
CD44-208ENST00000428726 UROC1Q96N76 676 aa8.37□□□□□ -1.07
CD44-208ENST00000428726 TSGA13Q96PP4 275 aa8.37□□□□□ -1.07
CD44-208ENST00000428726 ZNF184Q99676 751 aaPredicted RBP8.37□□□□□ -1.07
CD44-208ENST00000428726 GPR21Q99679 349 aa8.37□□□□□ -1.07
CD44-208ENST00000428726 GPR22Q99680 433 aa8.37□□□□□ -1.07
CD44-208ENST00000428726 KIFC1Q9BW19 673 aa8.37□□□□□ -1.07
CD44-208ENST00000428726 CINPQ9BW66 212 aaPredicted RBP8.37□□□□□ -1.07
CD44-208ENST00000428726 NDE1Q9NXR1 346 aa8.37□□□□□ -1.07
CD44-208ENST00000428726 HCFC2Q9Y5Z7 792 aa8.37□□□□□ -1.07
CD44-208ENST00000428726 TDRD15B5MCY1 1934 aaKnown RBP8.37□□□□□ -1.07
CD44-208ENST00000428726 A0A1W2PRU2 124 aa8.37□□□□□ -1.07
CD44-208ENST00000428726 BTN3A1O00481 513 aa8.37□□□□□ -1.07
CD44-208ENST00000428726 KIF3CO14782 793 aa8.37□□□□□ -1.07
CD44-208ENST00000428726 PER2O15055 1255 aa8.37□□□□□ -1.07
CD44-208ENST00000428726 CD3EAPO15446 510 aaKnown RBP8.37□□□□□ -1.07
CD44-208ENST00000428726 SRP72O76094 671 aaKnown RBP8.37□□□□□ -1.07
CD44-208ENST00000428726 IGLV3-25P01717 112 aa8.37□□□□□ -1.07
CD44-208ENST00000428726 MPOP05164 745 aa8.37□□□□□ -1.07
CD44-208ENST00000428726 MYL4P12829 197 aa8.37□□□□□ -1.07
CD44-208ENST00000428726 EFNA1P20827 205 aaPredicted RBP8.37□□□□□ -1.07
CD44-208ENST00000428726 HTR7P34969 479 aa8.37□□□□□ -1.07
CD44-208ENST00000428726 CPOXP36551 454 aa8.37□□□□□ -1.07
CD44-208ENST00000428726 CTSOP43234 321 aaPredicted RBP8.37□□□□□ -1.07
CD44-208ENST00000428726 AQP4P55087 323 aa8.37□□□□□ -1.07
CD44-208ENST00000428726 PDAP1Q13442 181 aaKnown RBP8.37□□□□□ -1.07
CD44-208ENST00000428726 BRMS1LQ5PSV4 323 aa8.37□□□□□ -1.07
CD44-208ENST00000428726 IYDQ6PHW0 289 aa8.37□□□□□ -1.07
CD44-208ENST00000428726 KDELC1Q6UW63 502 aa8.37□□□□□ -1.07
CD44-208ENST00000428726 CPNE9Q8IYJ1 553 aa8.37□□□□□ -1.07
CD44-208ENST00000428726 GRIN3AQ8TCU5 1115 aa8.37□□□□□ -1.07
CD44-208ENST00000428726 ING5Q8WYH8 240 aa8.37□□□□□ -1.07
CD44-208ENST00000428726 HAPLN3Q96S86 360 aa8.37□□□□□ -1.07
CD44-208ENST00000428726 CLSTN3Q9BQT9 956 aa8.37□□□□□ -1.07
CD44-208ENST00000428726 DDX18Q9NVP1 670 aaKnown RBP8.37□□□□□ -1.07
CD44-208ENST00000428726 NSMCE4AQ9NXX6 385 aa8.37□□□□□ -1.07
CD44-208ENST00000428726 THEGQ9P2T0 379 aa8.37□□□□□ -1.07
CD44-208ENST00000428726 ZNHIT2Q9UHR6 403 aa8.37□□□□□ -1.07
CD44-208ENST00000428726 APPL1Q9UKG1 709 aa8.37□□□□□ -1.07
CD44-208ENST00000428726 POMPQ9Y244 141 aa8.37□□□□□ -1.07
CD44-208ENST00000428726 PCDHB12Q9Y5F1 795 aa8.37□□□□□ -1.07
CD44-208ENST00000428726 COPG1Q9Y678 874 aaKnown RBP8.37□□□□□ -1.07
CD44-208ENST00000428726 DMDP11532 3685 aa8.37□□□□□ -1.07
CD44-208ENST00000428726 COL4A4P53420 1690 aaPredicted RBP8.36□□□□□ -1.07
CD44-208ENST00000428726 NR5A2O00482 541 aa8.36□□□□□ -1.07
CD44-208ENST00000428726 SCAMP1O15126 338 aa8.36□□□□□ -1.07
CD44-208ENST00000428726 LDB2O43679 373 aa8.36□□□□□ -1.07
CD44-208ENST00000428726 OAZ2O95190 189 aa8.36□□□□□ -1.07
CD44-208ENST00000428726 NKX3-2P78367 333 aa8.36□□□□□ -1.07
CD44-208ENST00000428726 NTHL1P78549 312 aa8.36□□□□□ -1.07
CD44-208ENST00000428726 MRPS35P82673 323 aaKnown RBP8.36□□□□□ -1.07
CD44-208ENST00000428726 GNA12Q03113 381 aa8.36□□□□□ -1.07
CD44-208ENST00000428726 NOGQ13253 232 aa8.36□□□□□ -1.07
CD44-208ENST00000428726 VPS26BQ4G0F5 336 aa8.36□□□□□ -1.07
CD44-208ENST00000428726 SFT2D3Q587I9 215 aa8.36□□□□□ -1.07
CD44-208ENST00000428726 LIPMQ5VYY2 423 aa8.36□□□□□ -1.07
CD44-208ENST00000428726 OR52E8Q6IFG1 317 aa8.36□□□□□ -1.07
CD44-208ENST00000428726 LZTR1Q8N653 840 aa8.36□□□□□ -1.07
CD44-208ENST00000428726 ICA1LQ8NDH6 482 aa8.36□□□□□ -1.07
CD44-208ENST00000428726 CLHC1Q8NHS4 586 aa8.36□□□□□ -1.07
CD44-208ENST00000428726 RNF217Q8TC41 542 aa8.36□□□□□ -1.07
CD44-208ENST00000428726 DPF3Q92784 378 aa8.36□□□□□ -1.07
CD44-208ENST00000428726 BTN2A3PQ96KV6 586 aa8.36□□□□□ -1.07
CD44-208ENST00000428726 GPR78Q96P69 363 aa8.36□□□□□ -1.07
CD44-208ENST00000428726 VCXQ9H320 206 aa8.36□□□□□ -1.07
CD44-208ENST00000428726 LATS2Q9NRM7 1088 aa8.36□□□□□ -1.07
CD44-208ENST00000428726 SCML2Q9UQR0 700 aa8.36□□□□□ -1.07
CD44-208ENST00000428726 CACNG3O60359 315 aa8.36□□□□□ -1.07
CD44-208ENST00000428726 CRCPO75575 148 aa8.36□□□□□ -1.07
CD44-208ENST00000428726 GLP2RO95838 553 aa8.36□□□□□ -1.07
CD44-208ENST00000428726 LYNP07948 512 aa8.36□□□□□ -1.07
CD44-208ENST00000428726 SLC2A3P11169 496 aa8.36□□□□□ -1.07
CD44-208ENST00000428726 ADRA1AP35348 466 aa8.36□□□□□ -1.07
CD44-208ENST00000428726 DIO3P55073 304 aa8.36□□□□□ -1.07
CD44-208ENST00000428726 OXCT1P55809 520 aa8.36□□□□□ -1.07
CD44-208ENST00000428726 SH3BP2P78314 561 aa8.36□□□□□ -1.07
CD44-208ENST00000428726 BTG3Q14201 252 aaPredicted RBP8.36□□□□□ -1.07
CD44-208ENST00000428726 MANEALQ5VSG8 457 aa8.36□□□□□ -1.07
CD44-208ENST00000428726 CUZD1Q86UP6 607 aa8.36□□□□□ -1.07
CD44-208ENST00000428726 SATL1Q86VE3 508 aa8.36□□□□□ -1.07
CD44-208ENST00000428726 CILP2Q8IUL8 1156 aa8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms