RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 O00370 1275 aa4.17□□□□□ -1.74
HMGB1-204ENST00000399489 IFIT3O14879 490 aaKnown RBP4.17□□□□□ -1.74
HMGB1-204ENST00000399489 CLIC2O15247 247 aa4.17□□□□□ -1.74
HMGB1-204ENST00000399489 CEP104O60308 925 aa4.17□□□□□ -1.74
HMGB1-204ENST00000399489 MITFO75030 526 aaPredicted RBP4.17□□□□□ -1.74
HMGB1-204ENST00000399489 ERN1O75460 977 aaKnown RBP4.17□□□□□ -1.74
HMGB1-204ENST00000399489 GPANK1O95872 356 aa4.17□□□□□ -1.74
HMGB1-204ENST00000399489 LYL1P12980 280 aa4.17□□□□□ -1.74
HMGB1-204ENST00000399489 CD19P15391 556 aa4.17□□□□□ -1.74
HMGB1-204ENST00000399489 EPORP19235 508 aa4.17□□□□□ -1.74
HMGB1-204ENST00000399489 PON1P27169 355 aa4.17□□□□□ -1.74
HMGB1-204ENST00000399489 LRPAP1P30533 357 aa4.17□□□□□ -1.74
HMGB1-204ENST00000399489 GDI1P31150 447 aa4.17□□□□□ -1.74
HMGB1-204ENST00000399489 STIP1P31948 543 aaKnown RBP4.17□□□□□ -1.74
HMGB1-204ENST00000399489 PLA2G5P39877 138 aa4.17□□□□□ -1.74
HMGB1-204ENST00000399489 MPLP40238 635 aa4.17□□□□□ -1.74
HMGB1-204ENST00000399489 MAGEA4P43358 317 aa4.17□□□□□ -1.74
HMGB1-204ENST00000399489 GSTM5P46439 218 aa4.17□□□□□ -1.74
HMGB1-204ENST00000399489 PXNP49023 591 aaPredicted RBP4.17□□□□□ -1.74
HMGB1-204ENST00000399489 DIO1P49895 249 aa4.17□□□□□ -1.74
HMGB1-204ENST00000399489 PRKAG1P54619 331 aa4.17□□□□□ -1.74
HMGB1-204ENST00000399489 FOXL2P58012 376 aa4.17□□□□□ -1.74
HMGB1-204ENST00000399489 LOXL3P58215 753 aa4.17□□□□□ -1.74
HMGB1-204ENST00000399489 TIAL1Q01085 375 aaKnown RBP eCLIP4.17□□□□□ -1.743e-6■■■■□ 21.9
HMGB1-204ENST00000399489 ELP6Q0PNE2 266 aa4.17□□□□□ -1.74
HMGB1-204ENST00000399489 GSTA3Q16772 222 aa4.17□□□□□ -1.74
HMGB1-204ENST00000399489 METRNLQ641Q3 311 aa4.17□□□□□ -1.74
HMGB1-204ENST00000399489 Q6ZNX1 250 aa4.17□□□□□ -1.74
HMGB1-204ENST00000399489 AACSQ86V21 672 aa4.17□□□□□ -1.74
HMGB1-204ENST00000399489 KLHL7Q8IXQ5 586 aa4.17□□□□□ -1.74
HMGB1-204ENST00000399489 VPS52Q8N1B4 723 aa4.17□□□□□ -1.74
HMGB1-204ENST00000399489 Q8NA96 180 aa4.17□□□□□ -1.74
HMGB1-204ENST00000399489 LPCAT1Q8NF37 534 aa4.17□□□□□ -1.74
HMGB1-204ENST00000399489 OR56B2PQ8NGI1 322 aa4.17□□□□□ -1.74
HMGB1-204ENST00000399489 SLC35B2Q8TB61 432 aa4.17□□□□□ -1.74
HMGB1-204ENST00000399489 GRAPLQ8TC17 118 aaPredicted RBP4.17□□□□□ -1.74
HMGB1-204ENST00000399489 URGCPQ8TCY9 931 aa4.17□□□□□ -1.74
HMGB1-204ENST00000399489 BCAS4Q8TDM0 211 aa4.17□□□□□ -1.74
HMGB1-204ENST00000399489 CLEC4CQ8WTT0 213 aa4.17□□□□□ -1.74
HMGB1-204ENST00000399489 PTPMT1Q8WUK0 201 aaPredicted RBP4.17□□□□□ -1.74
HMGB1-204ENST00000399489 TEKT4Q8WW24 435 aa4.17□□□□□ -1.74
HMGB1-204ENST00000399489 PSPC1Q8WXF1 523 aaKnown RBP4.17□□□□□ -1.74
HMGB1-204ENST00000399489 MRPL38Q96DV4 380 aaKnown RBP4.17□□□□□ -1.74
HMGB1-204ENST00000399489 FAR2Q96K12 515 aa4.17□□□□□ -1.74
HMGB1-204ENST00000399489 ZBTB45Q96K62 511 aaPredicted RBP4.17□□□□□ -1.74
HMGB1-204ENST00000399489 ERP44Q9BS26 406 aa4.17□□□□□ -1.74
HMGB1-204ENST00000399489 IMPG2Q9BZV3 1241 aa4.17□□□□□ -1.74
HMGB1-204ENST00000399489 GPR88Q9GZN0 384 aa4.17□□□□□ -1.74
HMGB1-204ENST00000399489 PLK3Q9H4B4 646 aa4.17□□□□□ -1.74
HMGB1-204ENST00000399489 FBXO28Q9NVF7 368 aa4.17□□□□□ -1.74
HMGB1-204ENST00000399489 SOHLH2Q9NX45 425 aa4.17□□□□□ -1.74
HMGB1-204ENST00000399489 ETAA1Q9NY74 926 aa4.17□□□□□ -1.74
HMGB1-204ENST00000399489 GDE1Q9NZC3 331 aa4.17□□□□□ -1.74
HMGB1-204ENST00000399489 ABI3Q9P2A4 366 aa4.17□□□□□ -1.74
HMGB1-204ENST00000399489 RIMKLBQ9ULI2 386 aa4.17□□□□□ -1.74
HMGB1-204ENST00000399489 SLC27A6Q9Y2P4 619 aa4.17□□□□□ -1.74
HMGB1-204ENST00000399489 MRPS17Q9Y2R5 130 aaKnown RBP4.17□□□□□ -1.74
HMGB1-204ENST00000399489 JRKLQ9Y4A0 524 aa4.17□□□□□ -1.74
HMGB1-204ENST00000399489 PCDHB2Q9Y5E7 798 aa4.17□□□□□ -1.74
HMGB1-204ENST00000399489 NSD2O96028 1365 aa4.17□□□□□ -1.74
HMGB1-204ENST00000399489 PIK3R4Q99570 1358 aa4.17□□□□□ -1.74
HMGB1-204ENST00000399489 TBC1D3DA0A087WVF3 549 aa4.16□□□□□ -1.74
HMGB1-204ENST00000399489 TBC1D3IA0A087WXS9 549 aa4.16□□□□□ -1.74
HMGB1-204ENST00000399489 TBC1D3EA0A087X179 549 aa4.16□□□□□ -1.74
HMGB1-204ENST00000399489 CYP2D7A0A087X1C5 515 aa4.16□□□□□ -1.74
HMGB1-204ENST00000399489 TBC1D3KA0A087X1G2 549 aa4.16□□□□□ -1.74
HMGB1-204ENST00000399489 A0A1W2PR77 199 aa4.16□□□□□ -1.74
HMGB1-204ENST00000399489 TBC1D3BA6NDS4 549 aa4.16□□□□□ -1.74
HMGB1-204ENST00000399489 TBC1D3FA6NER0 549 aaPredicted RBP4.16□□□□□ -1.74
HMGB1-204ENST00000399489 TBC1D3LB9A6J9 549 aa4.16□□□□□ -1.74
HMGB1-204ENST00000399489 ANGPT2O15123 496 aa4.16□□□□□ -1.74
HMGB1-204ENST00000399489 MAGEB3O15480 346 aa4.16□□□□□ -1.74
HMGB1-204ENST00000399489 NKX2-8O15522 239 aa4.16□□□□□ -1.74
HMGB1-204ENST00000399489 AKAP3O75969 853 aa4.16□□□□□ -1.74
HMGB1-204ENST00000399489 KAT7O95251 611 aa4.16□□□□□ -1.74
HMGB1-204ENST00000399489 KCNK5O95279 499 aa4.16□□□□□ -1.74
HMGB1-204ENST00000399489 PDGFBP01127 241 aaPredicted RBP4.16□□□□□ -1.74
HMGB1-204ENST00000399489 GBAP04062 536 aa4.16□□□□□ -1.74
HMGB1-204ENST00000399489 GALTP07902 379 aa4.16□□□□□ -1.74
HMGB1-204ENST00000399489 SRPRAP08240 638 aaKnown RBP4.16□□□□□ -1.74
HMGB1-204ENST00000399489 FAM58BPP0C7Q3 252 aa4.16□□□□□ -1.74
HMGB1-204ENST00000399489 TBC1D3HP0C7X1 549 aa4.16□□□□□ -1.74
HMGB1-204ENST00000399489 NCF1P14598 390 aaPredicted RBP4.16□□□□□ -1.74
HMGB1-204ENST00000399489 ARSAP15289 507 aa4.16□□□□□ -1.74
HMGB1-204ENST00000399489 PDGFRAP16234 1089 aa4.16□□□□□ -1.74
HMGB1-204ENST00000399489 ARF4P18085 180 aaPredicted RBP4.16□□□□□ -1.74
HMGB1-204ENST00000399489 DRD1P21728 446 aa4.16□□□□□ -1.74
HMGB1-204ENST00000399489 AHCYP23526 432 aa4.16□□□□□ -1.74
HMGB1-204ENST00000399489 PBX1P40424 430 aa4.16□□□□□ -1.74
HMGB1-204ENST00000399489 MTNR1AP48039 350 aa4.16□□□□□ -1.74
HMGB1-204ENST00000399489 SNU13P55769 128 aaKnown RBP4.16□□□□□ -1.74
HMGB1-204ENST00000399489 SP2Q02086 613 aa4.16□□□□□ -1.74
HMGB1-204ENST00000399489 CDK18Q07002 472 aa4.16□□□□□ -1.74
HMGB1-204ENST00000399489 CHIT1Q13231 466 aa4.16□□□□□ -1.74
HMGB1-204ENST00000399489 RUNX2Q13950 521 aa4.16□□□□□ -1.74
HMGB1-204ENST00000399489 PGM5Q15124 567 aa4.16□□□□□ -1.74
HMGB1-204ENST00000399489 IGSF11Q5DX21 431 aa4.16□□□□□ -1.74
HMGB1-204ENST00000399489 CERCAMQ5T4B2 595 aa4.16□□□□□ -1.74
HMGB1-204ENST00000399489 CYP4A22Q5TCH4 519 aa4.16□□□□□ -1.74
HMGB1-204ENST00000399489 FAM90A2PQ658T7 463 aa4.16□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms