RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 NUDT2P50583 147 aa11.13□□□□□ -0.63
TCOF1-203ENST00000394269 PSAPL1Q6NUJ1 521 aa11.13□□□□□ -0.63
TCOF1-203ENST00000394269 SNX32Q86XE0 403 aa11.13□□□□□ -0.63
TCOF1-203ENST00000394269 ULK2Q8IYT8 1036 aa11.13□□□□□ -0.63
TCOF1-203ENST00000394269 LSMEM2Q8N112 164 aa11.13□□□□□ -0.63
TCOF1-203ENST00000394269 DDX51Q8N8A6 666 aaKnown RBP eCLIP11.13□□□□□ -0.63
TCOF1-203ENST00000394269 DDX50Q9BQ39 737 aaKnown RBP11.13□□□□□ -0.63
TCOF1-203ENST00000394269 SEZ6LQ9BYH1 1024 aa11.13□□□□□ -0.63
TCOF1-203ENST00000394269 POLR3BQ9NW08 1133 aaPredicted RBP11.13□□□□□ -0.63
TCOF1-203ENST00000394269 GALPQ9UBC7 116 aa11.13□□□□□ -0.63
TCOF1-203ENST00000394269 TMEM114B3SHH9 223 aa11.13□□□□□ -0.63
TCOF1-203ENST00000394269 E5RI56 91 aa11.13□□□□□ -0.63
TCOF1-203ENST00000394269 TRAFD1O14545 582 aaPredicted RBP11.13□□□□□ -0.63
TCOF1-203ENST00000394269 PARNO95453 639 aaKnown RBP11.13□□□□□ -0.63
TCOF1-203ENST00000394269 COL6A2P12110 1019 aa11.13□□□□□ -0.63
TCOF1-203ENST00000394269 STK19P49842 368 aaPredicted RBP11.13□□□□□ -0.63
TCOF1-203ENST00000394269 FAM151BQ6UXP7 276 aa11.13□□□□□ -0.63
TCOF1-203ENST00000394269 NAT16Q8N8M0 369 aa11.13□□□□□ -0.63
TCOF1-203ENST00000394269 PTGR2Q8N8N7 351 aaPredicted RBP11.13□□□□□ -0.63
TCOF1-203ENST00000394269 PTERQ96BW5 349 aa11.13□□□□□ -0.63
TCOF1-203ENST00000394269 CMTM5Q96DZ9 223 aa11.13□□□□□ -0.63
TCOF1-203ENST00000394269 GPR21Q99679 349 aa11.13□□□□□ -0.63
TCOF1-203ENST00000394269 TCF25Q9BQ70 676 aa11.13□□□□□ -0.63
TCOF1-203ENST00000394269 TDRD1Q9BXT4 1180 aaKnown RBP11.13□□□□□ -0.63
TCOF1-203ENST00000394269 TNFRSF12AQ9NP84 129 aa11.13□□□□□ -0.63
TCOF1-203ENST00000394269 DNAJC28Q9NX36 388 aa11.13□□□□□ -0.63
TCOF1-203ENST00000394269 CXXC1Q9P0U4 656 aaPredicted RBP11.13□□□□□ -0.63
TCOF1-203ENST00000394269 NIPSNAP2O75323 286 aa11.12□□□□□ -0.63
TCOF1-203ENST00000394269 RBP1P09455 135 aa11.12□□□□□ -0.63
TCOF1-203ENST00000394269 ENO3P13929 434 aaPredicted RBP11.12□□□□□ -0.63
TCOF1-203ENST00000394269 LPOP22079 712 aaPredicted RBP11.12□□□□□ -0.63
TCOF1-203ENST00000394269 KLF10Q13118 480 aa11.12□□□□□ -0.63
TCOF1-203ENST00000394269 CBX2Q14781 532 aaPredicted RBP11.12□□□□□ -0.63
TCOF1-203ENST00000394269 PPP1R3AQ16821 1122 aa11.12□□□□□ -0.63
TCOF1-203ENST00000394269 PABPC1LQ4VXU2 614 aaKnown RBP11.12□□□□□ -0.63
TCOF1-203ENST00000394269 SPRED2Q7Z698 418 aa11.12□□□□□ -0.63
TCOF1-203ENST00000394269 SETD3Q86TU7 594 aaPredicted RBP11.12□□□□□ -0.63
TCOF1-203ENST00000394269 ITIH5Q86UX2 942 aa11.12□□□□□ -0.63
TCOF1-203ENST00000394269 KLHDC8BQ8IXV7 354 aa11.12□□□□□ -0.63
TCOF1-203ENST00000394269 FIBCD1Q8N539 461 aa11.12□□□□□ -0.63
TCOF1-203ENST00000394269 USP13Q92995 863 aaPredicted RBP11.12□□□□□ -0.63
TCOF1-203ENST00000394269 C11orf49Q9H6J7 331 aa11.12□□□□□ -0.63
TCOF1-203ENST00000394269 CCL26Q9Y258 94 aa11.12□□□□□ -0.63
TCOF1-203ENST00000394269 HIDE1A8MVS5 230 aa11.12□□□□□ -0.63
TCOF1-203ENST00000394269 GRID2O43424 1007 aa11.12□□□□□ -0.63
TCOF1-203ENST00000394269 LUC7L3O95232 432 aaKnown RBP11.12□□□□□ -0.63
TCOF1-203ENST00000394269 PAPSS2O95340 614 aaPredicted RBP11.12□□□□□ -0.63
TCOF1-203ENST00000394269 F11P03951 625 aa11.12□□□□□ -0.63
TCOF1-203ENST00000394269 LAYNQ6UX15 382 aa11.12□□□□□ -0.63
TCOF1-203ENST00000394269 DDX53Q86TM3 631 aaKnown RBP11.12□□□□□ -0.63
TCOF1-203ENST00000394269 RBM23Q86U06 439 aaKnown RBP11.12□□□□□ -0.63
TCOF1-203ENST00000394269 ISCA2Q86U28 154 aa11.12□□□□□ -0.63
TCOF1-203ENST00000394269 SIDT2Q8NBJ9 832 aaKnown RBP11.12□□□□□ -0.63
TCOF1-203ENST00000394269 SLC26A7Q8TE54 656 aa11.12□□□□□ -0.63
TCOF1-203ENST00000394269 MYRFLQ96LU7 910 aa11.12□□□□□ -0.63
TCOF1-203ENST00000394269 ZNF599Q96NL3 588 aa11.12□□□□□ -0.63
TCOF1-203ENST00000394269 NSUN5Q96P11 429 aaKnown RBP11.12□□□□□ -0.63
TCOF1-203ENST00000394269 SEMA4BQ9NPR2 832 aaPredicted RBP11.12□□□□□ -0.63
TCOF1-203ENST00000394269 GIMAP2Q9UG22 337 aa11.12□□□□□ -0.63
TCOF1-203ENST00000394269 SLC7A8Q9UHI5 535 aa11.12□□□□□ -0.63
TCOF1-203ENST00000394269 PTGDR2Q9Y5Y4 395 aa11.12□□□□□ -0.63
TCOF1-203ENST00000394269 TARM1B6A8C7 271 aa11.12□□□□□ -0.63
TCOF1-203ENST00000394269 C9JVG2 144 aa11.12□□□□□ -0.63
TCOF1-203ENST00000394269 H3BMM5 538 aa11.12□□□□□ -0.63
TCOF1-203ENST00000394269 CRCPO75575 148 aa11.12□□□□□ -0.63
TCOF1-203ENST00000394269 COX4I1P13073 169 aa11.12□□□□□ -0.63
TCOF1-203ENST00000394269 ZRSR2Q15696 482 aaKnown RBP11.12□□□□□ -0.63
TCOF1-203ENST00000394269 DBN1Q16643 649 aa11.12□□□□□ -0.63
TCOF1-203ENST00000394269 POM121L1PQ3SYA9 428 aa11.12□□□□□ -0.63
TCOF1-203ENST00000394269 TECRLQ5HYJ1 363 aa11.12□□□□□ -0.63
TCOF1-203ENST00000394269 SCIMPQ6UWF3 145 aa11.12□□□□□ -0.63
TCOF1-203ENST00000394269 RIPOR1Q6ZS17 1223 aa11.12□□□□□ -0.63
TCOF1-203ENST00000394269 LYSMD3Q7Z3D4 306 aa11.12□□□□□ -0.63
TCOF1-203ENST00000394269 CUZD1Q86UP6 607 aa11.12□□□□□ -0.63
TCOF1-203ENST00000394269 HPS6Q86YV9 775 aa11.12□□□□□ -0.63
TCOF1-203ENST00000394269 DDIASQ8IXT1 998 aa11.12□□□□□ -0.63
TCOF1-203ENST00000394269 TCEAL8Q8IYN2 117 aa11.12□□□□□ -0.63
TCOF1-203ENST00000394269 TMEM199Q8N511 208 aa11.12□□□□□ -0.63
TCOF1-203ENST00000394269 CLDN19Q8N6F1 224 aa11.12□□□□□ -0.63
TCOF1-203ENST00000394269 KREMEN2Q8NCW0 462 aa11.12□□□□□ -0.63
TCOF1-203ENST00000394269 RDH11Q8TC12 318 aa11.12□□□□□ -0.63
TCOF1-203ENST00000394269 TRPC4APQ8TEL6 797 aa11.12□□□□□ -0.63
TCOF1-203ENST00000394269 FAM8A1Q9UBU6 413 aa11.12□□□□□ -0.63
TCOF1-203ENST00000394269 TBC1D30Q9Y2I9 924 aa11.12□□□□□ -0.63
TCOF1-203ENST00000394269 PKP3Q9Y446 797 aa11.12□□□□□ -0.63
TCOF1-203ENST00000394269 SLC30A1Q9Y6M5 507 aa11.12□□□□□ -0.63
TCOF1-203ENST00000394269 WASF2Q9Y6W5 498 aa11.12□□□□□ -0.63
TCOF1-203ENST00000394269 GREB1Q4ZG55 1949 aa11.11□□□□□ -0.63
TCOF1-203ENST00000394269 BTN3A1O00481 513 aa11.11□□□□□ -0.63
TCOF1-203ENST00000394269 SMIM24O75264 130 aa11.11□□□□□ -0.63
TCOF1-203ENST00000394269 CD160O95971 181 aa11.11□□□□□ -0.63
TCOF1-203ENST00000394269 TIMP1P01033 207 aa11.11□□□□□ -0.63
TCOF1-203ENST00000394269 EPOP01588 193 aa11.11□□□□□ -0.63
TCOF1-203ENST00000394269 UGT1A6P19224 532 aa11.11□□□□□ -0.63
TCOF1-203ENST00000394269 UGT1A1P22309 533 aa11.11□□□□□ -0.63
TCOF1-203ENST00000394269 UGT1A4P22310 534 aa11.11□□□□□ -0.63
TCOF1-203ENST00000394269 CD70P32970 193 aa11.11□□□□□ -0.63
TCOF1-203ENST00000394269 UGT1A3P35503 534 aa11.11□□□□□ -0.63
TCOF1-203ENST00000394269 UGT1A5P35504 534 aa11.11□□□□□ -0.63
TCOF1-203ENST00000394269 PTDSS1P48651 473 aaKnown RBP11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms