RNA–Protein interactions for RNA: ENST00000376709.8

VSX1-202, Transcript of visual system homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VSX1, Length 2,192 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-202ENST00000376709 AUTS2Q8WXX7 1259 aa20.21■□□□□ 0.83
VSX1-202ENST00000376709 ZNF689Q96CS4 500 aaPredicted RBP20.21■□□□□ 0.83
VSX1-202ENST00000376709 MAELQ96JY0 434 aaKnown RBP20.21■□□□□ 0.83
VSX1-202ENST00000376709 CCDC68Q9H2F9 335 aa20.21■□□□□ 0.83
VSX1-202ENST00000376709 POPDC3Q9HBV1 291 aa20.21■□□□□ 0.83
VSX1-202ENST00000376709 ZBTB26Q9HCK0 441 aa20.21■□□□□ 0.83
VSX1-202ENST00000376709 RAI2Q9Y5P3 530 aa20.21■□□□□ 0.83
VSX1-202ENST00000376709 EIF4E1BA6NMX2 242 aaKnown RBP20.21■□□□□ 0.83
VSX1-202ENST00000376709 PPP3CCP48454 512 aa20.21■□□□□ 0.83
VSX1-202ENST00000376709 SMAD3P84022 425 aaKnown RBP20.21■□□□□ 0.83
VSX1-202ENST00000376709 ARF5P84085 180 aa20.21■□□□□ 0.83
VSX1-202ENST00000376709 SATB1Q01826 763 aa20.21■□□□□ 0.83
VSX1-202ENST00000376709 CARNMT1Q8N4J0 409 aa20.21■□□□□ 0.83
VSX1-202ENST00000376709 KYQ8NBH2 561 aa20.21■□□□□ 0.83
VSX1-202ENST00000376709 AARSD1Q9BTE6 412 aaKnown RBP20.21■□□□□ 0.83
VSX1-202ENST00000376709 ADGRE3Q9BY15 652 aa20.21■□□□□ 0.83
VSX1-202ENST00000376709 NDE1Q9NXR1 346 aa20.21■□□□□ 0.83
VSX1-202ENST00000376709 COPG1Q9Y678 874 aaKnown RBP20.21■□□□□ 0.83
VSX1-202ENST00000376709 BAG2O95816 211 aa20.2■□□□□ 0.82
VSX1-202ENST00000376709 PRLP01236 227 aa20.2■□□□□ 0.82
VSX1-202ENST00000376709 ACADSP16219 412 aa20.2■□□□□ 0.82
VSX1-202ENST00000376709 TIAL1Q01085 375 aaKnown RBP eCLIP20.2■□□□□ 0.82
VSX1-202ENST00000376709 GALNT1Q10472 559 aaPredicted RBP20.2■□□□□ 0.82
VSX1-202ENST00000376709 LRRC26Q2I0M4 334 aa20.2■□□□□ 0.82
VSX1-202ENST00000376709 C16orf89Q6UX73 402 aa20.2■□□□□ 0.82
VSX1-202ENST00000376709 DNAJB7Q7Z6W7 309 aaPredicted RBP20.2■□□□□ 0.82
VSX1-202ENST00000376709 EFCAB3Q8N7B9 438 aa20.2■□□□□ 0.82
VSX1-202ENST00000376709 CYP2S1Q96SQ9 504 aa20.2■□□□□ 0.82
VSX1-202ENST00000376709 TRMOQ9BU70 441 aa20.2■□□□□ 0.82
VSX1-202ENST00000376709 GSTO2Q9H4Y5 243 aa20.2■□□□□ 0.82
VSX1-202ENST00000376709 POMPQ9Y244 141 aa20.2■□□□□ 0.82
VSX1-202ENST00000376709 MAP3K7O43318 606 aa20.19■□□□□ 0.82
VSX1-202ENST00000376709 SNAP91O60641 907 aa20.19■□□□□ 0.82
VSX1-202ENST00000376709 TBL1XO60907 577 aa20.19■□□□□ 0.82
VSX1-202ENST00000376709 NDUFS3O75489 264 aa20.19■□□□□ 0.82
VSX1-202ENST00000376709 TMCC1O94876 653 aa20.19■□□□□ 0.82
VSX1-202ENST00000376709 PENKP01210 267 aaPredicted RBP20.19■□□□□ 0.82
VSX1-202ENST00000376709 URODP06132 367 aa20.19■□□□□ 0.82
VSX1-202ENST00000376709 CSF2RAP15509 400 aa20.19■□□□□ 0.82
VSX1-202ENST00000376709 SUOXP51687 545 aa20.19■□□□□ 0.82
VSX1-202ENST00000376709 ZNF678Q5SXM1 525 aa20.19■□□□□ 0.82
VSX1-202ENST00000376709 TTC16Q8NEE8 873 aa20.19■□□□□ 0.82
VSX1-202ENST00000376709 SLC26A7Q8TE54 656 aa20.19■□□□□ 0.82
VSX1-202ENST00000376709 L3HYPDHQ96EM0 354 aa20.19■□□□□ 0.82
VSX1-202ENST00000376709 SMIM14Q96QK8 99 aa20.19■□□□□ 0.82
VSX1-202ENST00000376709 RC3H2Q9HBD1 1191 aaKnown RBP20.19■□□□□ 0.82
VSX1-202ENST00000376709 TNFRSF12AQ9NP84 129 aa20.19■□□□□ 0.82
VSX1-202ENST00000376709 TYW5A2RUC4 315 aaKnown RBP20.19■□□□□ 0.82
VSX1-202ENST00000376709 RHOBTB1O94844 696 aa20.19■□□□□ 0.82
VSX1-202ENST00000376709 FMO4P31512 558 aa20.19■□□□□ 0.82
VSX1-202ENST00000376709 RFC2P35250 354 aa20.19■□□□□ 0.82
VSX1-202ENST00000376709 EPHB3P54753 998 aa20.19■□□□□ 0.82
VSX1-202ENST00000376709 MTTPP55157 894 aa20.19■□□□□ 0.82
VSX1-202ENST00000376709 HERVK_113P63132 956 aa20.19■□□□□ 0.82
VSX1-202ENST00000376709 NFKB2Q00653 900 aa20.19■□□□□ 0.82
VSX1-202ENST00000376709 AAGABQ6PD74 315 aa20.19■□□□□ 0.82
VSX1-202ENST00000376709 EFHBQ8N7U6 833 aa20.19■□□□□ 0.82
VSX1-202ENST00000376709 JADE3Q92613 823 aa20.19■□□□□ 0.82
VSX1-202ENST00000376709 RCN3Q96D15 328 aa20.19■□□□□ 0.82
VSX1-202ENST00000376709 HERC2P3Q9BVR0 1158 aa20.19■□□□□ 0.82
VSX1-202ENST00000376709 ERVK-6Q9BXR3 956 aa20.19■□□□□ 0.82
VSX1-202ENST00000376709 MEAF6Q9HAF1 191 aa20.19■□□□□ 0.82
VSX1-202ENST00000376709 POLR3BQ9NW08 1133 aaPredicted RBP20.19■□□□□ 0.82
VSX1-202ENST00000376709 VPS28Q9UK41 221 aa20.19■□□□□ 0.82
VSX1-202ENST00000376709 PPM1HQ9ULR3 514 aa20.19■□□□□ 0.82
VSX1-202ENST00000376709 FAM50BQ9Y247 325 aa20.19■□□□□ 0.82
VSX1-202ENST00000376709 LTBP2Q14767 1821 aa20.19■□□□□ 0.82
VSX1-202ENST00000376709 ABHD14A-ACY1A0A1B0GW23 586 aa20.18■□□□□ 0.82
VSX1-202ENST00000376709 ANKRD66B4E2M5 251 aa20.18■□□□□ 0.82
VSX1-202ENST00000376709 SRP72O76094 671 aaKnown RBP20.18■□□□□ 0.82
VSX1-202ENST00000376709 TSPAN8P19075 237 aa20.18■□□□□ 0.82
VSX1-202ENST00000376709 LPOP22079 712 aaPredicted RBP20.18■□□□□ 0.82
VSX1-202ENST00000376709 C1QTNF8P60827 252 aa20.18■□□□□ 0.82
VSX1-202ENST00000376709 RAB33AQ14088 237 aa20.18■□□□□ 0.82
VSX1-202ENST00000376709 HERC3Q15034 1050 aa20.18■□□□□ 0.82
VSX1-202ENST00000376709 CMPK2Q5EBM0 449 aa20.18■□□□□ 0.82
VSX1-202ENST00000376709 DSELQ8IZU8 1212 aa20.18■□□□□ 0.82
VSX1-202ENST00000376709 PYDC1Q8WXC3 89 aa20.18■□□□□ 0.82
VSX1-202ENST00000376709 S100A14Q9HCY8 104 aa20.18■□□□□ 0.82
VSX1-202ENST00000376709 TAS2R13Q9NYV9 303 aa20.18■□□□□ 0.82
VSX1-202ENST00000376709 FNDC3AQ9Y2H6 1198 aaKnown RBP20.18■□□□□ 0.82
VSX1-202ENST00000376709 TRAF6Q9Y4K3 522 aa20.18■□□□□ 0.82
VSX1-202ENST00000376709 F11P03951 625 aa20.18■□□□□ 0.82
VSX1-202ENST00000376709 MZF1P28698 734 aaPredicted RBP20.18■□□□□ 0.82
VSX1-202ENST00000376709 ZNF783Q6ZMS7 281 aa20.18■□□□□ 0.82
VSX1-202ENST00000376709 RAB44Q7Z6P3 723 aaPredicted RBP20.18■□□□□ 0.82
VSX1-202ENST00000376709 HIPK4Q8NE63 616 aa20.18■□□□□ 0.82
VSX1-202ENST00000376709 LPGAT1Q92604 370 aa20.18■□□□□ 0.82
VSX1-202ENST00000376709 PAWRQ96IZ0 340 aaKnown RBP20.18■□□□□ 0.82
VSX1-202ENST00000376709 SLC22A12Q96S37 553 aa20.18■□□□□ 0.82
VSX1-202ENST00000376709 SERPINI1Q99574 410 aa20.18■□□□□ 0.82
VSX1-202ENST00000376709 ZBED2Q9BTP6 218 aa20.18■□□□□ 0.82
VSX1-202ENST00000376709 SYTL2Q9HCH5 934 aa20.18■□□□□ 0.82
VSX1-202ENST00000376709 BATF3Q9NR55 127 aa20.18■□□□□ 0.82
VSX1-202ENST00000376709 PRPF19Q9UMS4 504 aaKnown RBP20.18■□□□□ 0.82
VSX1-202ENST00000376709 INSL5Q9Y5Q6 135 aa20.18■□□□□ 0.82
VSX1-202ENST00000376709 TRIM43BA6NCK2 446 aa20.17■□□□□ 0.82
VSX1-202ENST00000376709 UBFD1O14562 309 aaKnown RBP20.17■□□□□ 0.82
VSX1-202ENST00000376709 WDR5P61964 334 aaKnown RBP20.17■□□□□ 0.82
VSX1-202ENST00000376709 CCNIQ14094 377 aa20.17■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms