RNA–Protein interactions for RNA: ENST00000349062.6

TRIM4-201, Transcript of tripartite motif containing 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TRIM4, Length 3,374 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4-201ENST00000349062 RAG1P15918 1043 aa13.9□□□□□ -0.18
TRIM4-201ENST00000349062 HOXD9P28356 352 aaPredicted RBP13.9□□□□□ -0.18
TRIM4-201ENST00000349062 ART3Q13508 389 aa13.9□□□□□ -0.18
TRIM4-201ENST00000349062 ARHGEF6Q15052 776 aa13.9□□□□□ -0.18
TRIM4-201ENST00000349062 ARMC12Q5T9G4 340 aa13.9□□□□□ -0.18
TRIM4-201ENST00000349062 PTGR2Q8N8N7 351 aaPredicted RBP13.9□□□□□ -0.18
TRIM4-201ENST00000349062 OR9I1Q8NGQ6 314 aa13.9□□□□□ -0.18
TRIM4-201ENST00000349062 PIP4K2CQ8TBX8 421 aa13.9□□□□□ -0.18
TRIM4-201ENST00000349062 TRPC4APQ8TEL6 797 aa13.9□□□□□ -0.18
TRIM4-201ENST00000349062 PANX3Q96QZ0 392 aa13.9□□□□□ -0.18
TRIM4-201ENST00000349062 CENPKQ9BS16 269 aa13.9□□□□□ -0.18
TRIM4-201ENST00000349062 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.9□□□□□ -0.18
TRIM4-201ENST00000349062 E5RI56 91 aa13.89□□□□□ -0.19
TRIM4-201ENST00000349062 TMCC1O94876 653 aa13.89□□□□□ -0.19
TRIM4-201ENST00000349062 PRAMEF12O95522 483 aa13.89□□□□□ -0.19
TRIM4-201ENST00000349062 ITGB8P26012 769 aa13.89□□□□□ -0.19
TRIM4-201ENST00000349062 CRABP2P29373 138 aa13.89□□□□□ -0.19
TRIM4-201ENST00000349062 TRIP10Q15642 601 aa13.89□□□□□ -0.19
TRIM4-201ENST00000349062 KIF19Q2TAC6 998 aa13.89□□□□□ -0.19
TRIM4-201ENST00000349062 MRNIPQ6NTE8 343 aa13.89□□□□□ -0.19
TRIM4-201ENST00000349062 PAQR3Q6TCH7 311 aa13.89□□□□□ -0.19
TRIM4-201ENST00000349062 SLC39A5Q6ZMH5 540 aa13.89□□□□□ -0.19
TRIM4-201ENST00000349062 CLEC14AQ86T13 490 aa13.89□□□□□ -0.19
TRIM4-201ENST00000349062 ST13P4Q8IZP2 240 aaPredicted RBP13.89□□□□□ -0.19
TRIM4-201ENST00000349062 STYXQ8WUJ0 223 aa13.89□□□□□ -0.19
TRIM4-201ENST00000349062 ECSITQ9BQ95 431 aa13.89□□□□□ -0.19
TRIM4-201ENST00000349062 TRIM8Q9BZR9 551 aa13.89□□□□□ -0.19
TRIM4-201ENST00000349062 ZNF334Q9HCZ1 680 aaPredicted RBP13.89□□□□□ -0.19
TRIM4-201ENST00000349062 PDP2Q9P2J9 529 aa13.89□□□□□ -0.19
TRIM4-201ENST00000349062 AFF4Q9UHB7 1163 aaKnown RBP13.89□□□□□ -0.19
TRIM4-201ENST00000349062 RAP2CQ9Y3L5 183 aa13.89□□□□□ -0.19
TRIM4-201ENST00000349062 TIMM22Q9Y584 194 aa13.89□□□□□ -0.19
TRIM4-201ENST00000349062 GREB1Q4ZG55 1949 aa13.89□□□□□ -0.19
TRIM4-201ENST00000349062 SZT2Q5T011 3432 aa13.89□□□□□ -0.19
TRIM4-201ENST00000349062 A8MT66 165 aa13.89□□□□□ -0.19
TRIM4-201ENST00000349062 CCL16O15467 120 aa13.89□□□□□ -0.19
TRIM4-201ENST00000349062 S1PR4O95977 384 aa13.89□□□□□ -0.19
TRIM4-201ENST00000349062 CSKP41240 450 aa13.89□□□□□ -0.19
TRIM4-201ENST00000349062 TUBB3Q13509 450 aa13.89□□□□□ -0.19
TRIM4-201ENST00000349062 KRT72Q14CN4 511 aa13.89□□□□□ -0.19
TRIM4-201ENST00000349062 FAM151BQ6UXP7 276 aa13.89□□□□□ -0.19
TRIM4-201ENST00000349062 CDKN2AIPNLQ96HQ2 116 aa13.89□□□□□ -0.19
TRIM4-201ENST00000349062 CDRT15Q96T59 188 aa13.89□□□□□ -0.19
TRIM4-201ENST00000349062 ZNF212Q9UDV6 495 aa13.89□□□□□ -0.19
TRIM4-201ENST00000349062 CLEC4EQ9ULY5 219 aa13.89□□□□□ -0.19
TRIM4-201ENST00000349062 TRAFD1O14545 582 aaPredicted RBP13.89□□□□□ -0.19
TRIM4-201ENST00000349062 SMAD6O43541 496 aaKnown RBP13.89□□□□□ -0.19
TRIM4-201ENST00000349062 RNASEH1O60930 286 aaKnown RBP13.89□□□□□ -0.19
TRIM4-201ENST00000349062 GUCA1CO95843 209 aa13.89□□□□□ -0.19
TRIM4-201ENST00000349062 HMGA1P17096 107 aaKnown RBP13.89□□□□□ -0.19
TRIM4-201ENST00000349062 MC4RP32245 332 aa13.89□□□□□ -0.19
TRIM4-201ENST00000349062 MED21Q13503 144 aa13.89□□□□□ -0.19
TRIM4-201ENST00000349062 ARTNQ5T4W7 220 aa13.89□□□□□ -0.19
TRIM4-201ENST00000349062 APCDD1Q8J025 514 aa13.89□□□□□ -0.19
TRIM4-201ENST00000349062 SCML4Q8N228 414 aa13.89□□□□□ -0.19
TRIM4-201ENST00000349062 CLDN19Q8N6F1 224 aa13.89□□□□□ -0.19
TRIM4-201ENST00000349062 NAT16Q8N8M0 369 aa13.89□□□□□ -0.19
TRIM4-201ENST00000349062 SLC43A3Q8NBI5 491 aa13.89□□□□□ -0.19
TRIM4-201ENST00000349062 CCDC97Q96F63 343 aaPredicted RBP13.89□□□□□ -0.19
TRIM4-201ENST00000349062 HIC2Q96JB3 615 aa13.89□□□□□ -0.19
TRIM4-201ENST00000349062 GPR21Q99679 349 aa13.89□□□□□ -0.19
TRIM4-201ENST00000349062 VPS45Q9NRW7 570 aa13.89□□□□□ -0.19
TRIM4-201ENST00000349062 CFAP97Q9P2B7 532 aa13.89□□□□□ -0.19
TRIM4-201ENST00000349062 INPPL1O15357 1258 aa13.88□□□□□ -0.19
TRIM4-201ENST00000349062 TEX28O15482 410 aa13.88□□□□□ -0.19
TRIM4-201ENST00000349062 PIK3R1P27986 724 aa13.88□□□□□ -0.19
TRIM4-201ENST00000349062 POU4F1Q01851 419 aa13.88□□□□□ -0.19
TRIM4-201ENST00000349062 PRKAA1Q13131 559 aa13.88□□□□□ -0.19
TRIM4-201ENST00000349062 PITRM1Q5JRX3 1037 aa13.88□□□□□ -0.19
TRIM4-201ENST00000349062 ADGRF1Q5T601 910 aa13.88□□□□□ -0.19
TRIM4-201ENST00000349062 PSAPL1Q6NUJ1 521 aa13.88□□□□□ -0.19
TRIM4-201ENST00000349062 PIANPQ8IYJ0 282 aa13.88□□□□□ -0.19
TRIM4-201ENST00000349062 LSMEM2Q8N112 164 aa13.88□□□□□ -0.19
TRIM4-201ENST00000349062 MDGA1Q8NFP4 955 aa13.88□□□□□ -0.19
TRIM4-201ENST00000349062 GATA6Q92908 595 aa13.88□□□□□ -0.19
TRIM4-201ENST00000349062 PTERQ96BW5 349 aa13.88□□□□□ -0.19
TRIM4-201ENST00000349062 MRPL57Q9BQC6 102 aaKnown RBP13.88□□□□□ -0.19
TRIM4-201ENST00000349062 SLC39A3Q9BRY0 314 aa13.88□□□□□ -0.19
TRIM4-201ENST00000349062 DRC3Q9H069 523 aa13.88□□□□□ -0.19
TRIM4-201ENST00000349062 MID1IP1Q9NPA3 183 aa13.88□□□□□ -0.19
TRIM4-201ENST00000349062 POLR3BQ9NW08 1133 aaPredicted RBP13.88□□□□□ -0.19
TRIM4-201ENST00000349062 HCFC1R1Q9NWW0 138 aa13.88□□□□□ -0.19
TRIM4-201ENST00000349062 MTRRQ9UBK8 725 aa13.88□□□□□ -0.19
TRIM4-201ENST00000349062 MID2Q9UJV3 735 aa13.88□□□□□ -0.19
TRIM4-201ENST00000349062 PRUNE2Q8WUY3 3088 aa13.88□□□□□ -0.19
TRIM4-201ENST00000349062 BTN3A1O00481 513 aa13.88□□□□□ -0.19
TRIM4-201ENST00000349062 HNRNPCL1O60812 293 aaKnown RBP13.88□□□□□ -0.19
TRIM4-201ENST00000349062 STK19P49842 368 aaPredicted RBP13.88□□□□□ -0.19
TRIM4-201ENST00000349062 EPHB3P54753 998 aa13.88□□□□□ -0.19
TRIM4-201ENST00000349062 ZXDBP98169 803 aa13.88□□□□□ -0.19
TRIM4-201ENST00000349062 CREB5Q02930 508 aa13.88□□□□□ -0.19
TRIM4-201ENST00000349062 DYNC1I2Q13409 638 aaKnown RBP13.88□□□□□ -0.19
TRIM4-201ENST00000349062 AGKQ53H12 422 aa13.88□□□□□ -0.19
TRIM4-201ENST00000349062 AFMIDQ63HM1 303 aa13.88□□□□□ -0.19
TRIM4-201ENST00000349062 EPGNQ6UW88 154 aa13.88□□□□□ -0.19
TRIM4-201ENST00000349062 BEND5Q7L4P6 421 aa13.88□□□□□ -0.19
TRIM4-201ENST00000349062 SIDT2Q8NBJ9 832 aaKnown RBP13.88□□□□□ -0.19
TRIM4-201ENST00000349062 CMTM5Q96DZ9 223 aa13.88□□□□□ -0.19
TRIM4-201ENST00000349062 IGSF5Q9NSI5 407 aa13.88□□□□□ -0.19
TRIM4-201ENST00000349062 TYW5A2RUC4 315 aaKnown RBP13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms