RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 MAGEA12P43365 314 aa12.84□□□□□ -0.35
CLK3-201ENST00000345005 PDE1CQ14123 709 aaPredicted RBP12.84□□□□□ -0.35
CLK3-201ENST00000345005 PRSS36Q5K4E3 855 aa12.84□□□□□ -0.35
CLK3-201ENST00000345005 FAM109BQ6ICB4 259 aaPredicted RBP12.84□□□□□ -0.35
CLK3-201ENST00000345005 NEPROQ6NW34 567 aa12.84□□□□□ -0.35
CLK3-201ENST00000345005 CDHR3Q6ZTQ4 885 aa12.84□□□□□ -0.35
CLK3-201ENST00000345005 KIAA0408Q6ZU52 694 aa12.84□□□□□ -0.35
CLK3-201ENST00000345005 DHDDSQ86SQ9 333 aa12.84□□□□□ -0.35
CLK3-201ENST00000345005 METTL3Q86U44 580 aaKnown RBP12.84□□□□□ -0.35
CLK3-201ENST00000345005 ALYREFQ86V81 257 aaKnown RBP12.84□□□□□ -0.35
CLK3-201ENST00000345005 ZC3HC1Q86WB0 502 aaKnown RBP12.84□□□□□ -0.35
CLK3-201ENST00000345005 TMEM126BQ8IUX1 230 aa12.84□□□□□ -0.35
CLK3-201ENST00000345005 PIWIL2Q8TC59 973 aaKnown RBP12.84□□□□□ -0.35
CLK3-201ENST00000345005 USP13Q92995 863 aaPredicted RBP12.84□□□□□ -0.35
CLK3-201ENST00000345005 VPS39Q96JC1 886 aa12.84□□□□□ -0.35
CLK3-201ENST00000345005 PANX3Q96QZ0 392 aa12.84□□□□□ -0.35
CLK3-201ENST00000345005 ADGRE3Q9BY15 652 aa12.84□□□□□ -0.35
CLK3-201ENST00000345005 SNX15Q9NRS6 342 aa12.84□□□□□ -0.35
CLK3-201ENST00000345005 TBC1D14Q9P2M4 693 aa12.84□□□□□ -0.35
CLK3-201ENST00000345005 SLC7A8Q9UHI5 535 aa12.84□□□□□ -0.35
CLK3-201ENST00000345005 RIMKLBQ9ULI2 386 aa12.84□□□□□ -0.35
CLK3-201ENST00000345005 CCL26Q9Y258 94 aa12.84□□□□□ -0.35
CLK3-201ENST00000345005 HCFC2Q9Y5Z7 792 aa12.84□□□□□ -0.35
CLK3-201ENST00000345005 SEC23IPQ9Y6Y8 1000 aaKnown RBP12.84□□□□□ -0.35
CLK3-201ENST00000345005 CEP290O15078 2479 aa12.84□□□□□ -0.35
CLK3-201ENST00000345005 LDB2O43679 373 aa12.83□□□□□ -0.35
CLK3-201ENST00000345005 BAG2O95816 211 aa12.83□□□□□ -0.35
CLK3-201ENST00000345005 AHSGP02765 367 aa12.83□□□□□ -0.35
CLK3-201ENST00000345005 PABPC4LP0CB38 370 aaKnown RBP12.83□□□□□ -0.35
CLK3-201ENST00000345005 TCF3P15923 654 aa12.83□□□□□ -0.35
CLK3-201ENST00000345005 RHOAP61586 193 aa12.83□□□□□ -0.35
CLK3-201ENST00000345005 ILF2Q12905 390 aaKnown RBP12.83□□□□□ -0.35
CLK3-201ENST00000345005 LMAN2Q12907 356 aa12.83□□□□□ -0.35
CLK3-201ENST00000345005 GALNT3Q14435 633 aa12.83□□□□□ -0.35
CLK3-201ENST00000345005 NCEH1Q6PIU2 408 aa12.83□□□□□ -0.35
CLK3-201ENST00000345005 GRASPQ7Z6J2 395 aaPredicted RBP12.83□□□□□ -0.35
CLK3-201ENST00000345005 TTC7BQ86TV6 843 aa12.83□□□□□ -0.35
CLK3-201ENST00000345005 PDSS2Q86YH6 399 aa12.83□□□□□ -0.35
CLK3-201ENST00000345005 APCDD1Q8J025 514 aa12.83□□□□□ -0.35
CLK3-201ENST00000345005 ZNF557Q8N988 423 aaPredicted RBP12.83□□□□□ -0.35
CLK3-201ENST00000345005 C2CD4AQ8NCU7 369 aaPredicted RBP12.83□□□□□ -0.35
CLK3-201ENST00000345005 CATSPER1Q8NEC5 780 aa12.83□□□□□ -0.35
CLK3-201ENST00000345005 OR6Y1Q8NGX8 325 aa12.83□□□□□ -0.35
CLK3-201ENST00000345005 SREK1Q8WXA9 508 aaKnown RBP12.83□□□□□ -0.35
CLK3-201ENST00000345005 RMDN1Q96DB5 314 aa12.83□□□□□ -0.35
CLK3-201ENST00000345005 EXOC2Q96KP1 924 aa12.83□□□□□ -0.35
CLK3-201ENST00000345005 GPR22Q99680 433 aa12.83□□□□□ -0.35
CLK3-201ENST00000345005 DNAJC28Q9NX36 388 aa12.83□□□□□ -0.35
CLK3-201ENST00000345005 PLK2Q9NYY3 685 aa12.83□□□□□ -0.35
CLK3-201ENST00000345005 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP12.83□□□□□ -0.35
CLK3-201ENST00000345005 ARMCX1Q9P291 453 aa12.83□□□□□ -0.35
CLK3-201ENST00000345005 LHX3Q9UBR4 397 aa12.83□□□□□ -0.35
CLK3-201ENST00000345005 FBXO5Q9UKT4 447 aa12.83□□□□□ -0.35
CLK3-201ENST00000345005 RAI2Q9Y5P3 530 aa12.83□□□□□ -0.35
CLK3-201ENST00000345005 GMEB1Q9Y692 573 aa12.83□□□□□ -0.35
CLK3-201ENST00000345005 EIF4E1BA6NMX2 242 aaKnown RBP12.83□□□□□ -0.36
CLK3-201ENST00000345005 AP1G1O43747 822 aa12.83□□□□□ -0.36
CLK3-201ENST00000345005 CRTAMO95727 393 aa12.83□□□□□ -0.36
CLK3-201ENST00000345005 UQCRBP14927 111 aa12.83□□□□□ -0.36
CLK3-201ENST00000345005 COPAP53621 1224 aa12.83□□□□□ -0.36
CLK3-201ENST00000345005 PRAMEP78395 509 aa12.83□□□□□ -0.36
CLK3-201ENST00000345005 KDSRQ06136 332 aa12.83□□□□□ -0.36
CLK3-201ENST00000345005 SFSWAPQ12872 951 aaKnown RBP12.83□□□□□ -0.36
CLK3-201ENST00000345005 CDC16Q13042 620 aa12.83□□□□□ -0.36
CLK3-201ENST00000345005 CTBP1Q13363 440 aa12.83□□□□□ -0.36
CLK3-201ENST00000345005 GRM2Q14416 872 aa12.83□□□□□ -0.36
CLK3-201ENST00000345005 ZNF697Q5TEC3 545 aa12.83□□□□□ -0.36
CLK3-201ENST00000345005 ZNF470Q6ECI4 717 aa12.83□□□□□ -0.36
CLK3-201ENST00000345005 GALNT7Q86SF2 657 aa12.83□□□□□ -0.36
CLK3-201ENST00000345005 RBM23Q86U06 439 aaKnown RBP12.83□□□□□ -0.36
CLK3-201ENST00000345005 TREML1Q86YW5 311 aa12.83□□□□□ -0.36
CLK3-201ENST00000345005 ALDH16A1Q8IZ83 802 aa12.83□□□□□ -0.36
CLK3-201ENST00000345005 OR13J1Q8NGT2 312 aa12.83□□□□□ -0.36
CLK3-201ENST00000345005 BLOC1S5Q8TDH9 187 aa12.83□□□□□ -0.36
CLK3-201ENST00000345005 ACTRT2Q8TDY3 377 aa12.83□□□□□ -0.36
CLK3-201ENST00000345005 STYXQ8WUJ0 223 aa12.83□□□□□ -0.36
CLK3-201ENST00000345005 ZNF707Q96C28 371 aaPredicted RBP12.83□□□□□ -0.36
CLK3-201ENST00000345005 OTUB2Q96DC9 234 aa12.83□□□□□ -0.36
CLK3-201ENST00000345005 ATXN7L3BQ96GX2 97 aa12.83□□□□□ -0.36
CLK3-201ENST00000345005 TTC1Q99614 292 aa12.83□□□□□ -0.36
CLK3-201ENST00000345005 TDRD1Q9BXT4 1180 aaKnown RBP12.83□□□□□ -0.36
CLK3-201ENST00000345005 LMAN2LQ9H0V9 348 aa12.83□□□□□ -0.36
CLK3-201ENST00000345005 MFSD1Q9H3U5 465 aa12.83□□□□□ -0.36
CLK3-201ENST00000345005 PIDD1Q9HB75 910 aa12.83□□□□□ -0.36
CLK3-201ENST00000345005 TMCO1Q9UM00 188 aa12.83□□□□□ -0.36
CLK3-201ENST00000345005 WASF2Q9Y6W5 498 aa12.83□□□□□ -0.36
CLK3-201ENST00000345005 LAMA3Q16787 3333 aa12.82□□□□□ -0.36
CLK3-201ENST00000345005 C2orf16Q68DN1 1984 aa12.82□□□□□ -0.36
CLK3-201ENST00000345005 SLC1A2P43004 574 aa12.82□□□□□ -0.36
CLK3-201ENST00000345005 MAGEA10P43363 369 aaPredicted RBP12.82□□□□□ -0.36
CLK3-201ENST00000345005 CSNK1DP48730 415 aa12.82□□□□□ -0.36
CLK3-201ENST00000345005 AP1S1P61966 158 aa12.82□□□□□ -0.36
CLK3-201ENST00000345005 NTHL1P78549 312 aa12.82□□□□□ -0.36
CLK3-201ENST00000345005 ACVR1Q04771 509 aa12.82□□□□□ -0.36
CLK3-201ENST00000345005 BTKQ06187 659 aa12.82□□□□□ -0.36
CLK3-201ENST00000345005 PLEKHG6Q3KR16 790 aa12.82□□□□□ -0.36
CLK3-201ENST00000345005 RNF135Q8IUD6 432 aa12.82□□□□□ -0.36
CLK3-201ENST00000345005 DENND6AQ8IWF6 608 aa12.82□□□□□ -0.36
CLK3-201ENST00000345005 OR6P1Q8NGX9 317 aa12.82□□□□□ -0.36
CLK3-201ENST00000345005 HDAC10Q969S8 669 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms